Rmu_sc0001650.1_g000014

Vicilin-like antimicrobial peptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001650.1
OG0001754
Physical Location & Seq
Forward (+)
55370 .. 57297
1928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001650.1_g000014.1.cds

Sequence Viewer

Length: 1320 bp
atggtgagcgtcctggttcttgcacttgtgatgtgctttggagtcatggcaatggctatgagcttcgatcacgaagacgaggactggcgaagggatcatagggaagaagagtgggaagggcacagaagacatcaccattggttccttttgcaacgatctagactactgctgagaactgaagctggggaaatgagggtggtgaggagtgtaggtcagagaatggttgatagacatataaatgttgggtttctctccatggaacccaactctcttttcatccctcagtaccttgatgccagcgtggtcctctttgtccacacaggtcaagcaaatgtgggattggtaagccaacatgaactcggagagaggcaattgaaggctggggatttgtacagaatcccagctggttcaacattttacttgcaaaatgttggggagggccagagacttgagctcattctcagcattgacacatctgatagtttaagaatgggtactttggaggtctcatcttcagaactaaagcacattttgacaaggcaacaagagggtccaattgtatctctgaataattctcaatcatcatcaaacctttggacaaaattcctaagcatgaaagagcaggacagactacaagaactaaagaaaatggtcgacttcccacaagaacaagagcaaagccaaacatggtcatggaggaaactcttgacctctatgttcggaacaatcgaaaacgagaagaggacgcaaaatcatcatgagcactcccagaaggcttacaacctctatgcgaggaggccggatttcaagaacaactatggatcgagcttgtcagttgatgagtctgattactcactgctacaaaactccggcattggcgtttaccttgtcaatcttaacgcaggatcgatgttggcaccacatgtgaacccagctgcaacagaatacggcgtcgttctaagaggctcaggatcactccagattgtgtttccaaacggaaccttggcaatgaaggcgaaactaaaaccagggagagtgttctgggtgccgaggtacttcccatttgtccaggtggcatctaacaacgagcaacttcagattttcgggttcactacctcaaagcagccgaaccacccacaatttctggctggttctagctcggtgcttgaagctctaagaggtccggaacttgcagctgcttttggtgtgagcgagggaaggttgaagagttttgttaatgctcagcgcgaagctgtaatcttaccttacaatgcggagaggcatcatgagacacatgggatccccatggcggactggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0030054 GO:0043207 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

439

Amino Acids

49.85

Weight (kDa)

6.66

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 916, 1045
AccI GTMKAC 1 cut(s) 654
AccII CGCG 1 cut(s) 1248
AccIII TCCGGA 1 cut(s) 1183
AciI CCGC 2 cut(s) 1274, 1310
AclWI GGATC 6 cut(s) 102, 829, 913, 979, 1294, 1307
AcsI RAATTY 1 cut(s) 602
AcuI CTGAAG 3 cut(s) 198, 498, 1079
AcyI GRCGYC 1 cut(s) 951
AfaI GTAC 4 cut(s) 287, 392, 496, 1055
AfiI CCNNNNNNNGG 1 cut(s) 1309
AflIII ACRYGT 1 cut(s) 922
AgsI TTSAA 5 cut(s) 376, 411, 808, 1169, 1225
AjnI CCWGG 3 cut(s) 12, 1027, 1068
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
Alw21I GWGCWC 2 cut(s) 456, 765
Alw26I GTCTC 3 cut(s) 439, 511, 1283
AlwI GGATC 6 cut(s) 102, 829, 913, 979, 1294, 1307
Aor13HI TCCGGA 1 cut(s) 1183
AoxI GGCC 2 cut(s) 439, 797
ApeKI GCWGC 4 cut(s) 935, 1123, 1193, 1196
ApoI RAATTY 1 cut(s) 602
AspLEI GCGC 1 cut(s) 1248
AspS9I GGNCC 4 cut(s) 304, 439, 551, 1181
AsuHPI GGTGA 3 cut(s) 16, 125, 211
AvaII GGWCC 3 cut(s) 304, 551, 1181
BaeGI GKGCMC 1 cut(s) 123
BamHI GGATCC 1 cut(s) 1299
BanI GGYRCC 2 cut(s) 916, 1045
BanII GRGCYC 1 cut(s) 456
BbsI GAAGAC 2 cut(s) 81, 133
Bbv12I GWGCWC 2 cut(s) 456, 765
BbvI GCAGC 4 cut(s) 922, 1135, 1183, 1205
BceAI ACGGC 1 cut(s) 964
BciT130I CCWGG 3 cut(s) 14, 1029, 1070
BcoDI GTCTC 3 cut(s) 439, 511, 1283
BfaI CTAG 2 cut(s) 159, 1155
BisI GCNGC 4 cut(s) 936, 1124, 1194, 1197
BlpI GCTNAGC 1 cut(s) 1242
BlsI GCNGC 4 cut(s) 937, 1125, 1195, 1198
Bme1390I CCNGG 3 cut(s) 14, 1029, 1070
Bme18I GGWCC 3 cut(s) 304, 551, 1181
BmgT120I GGNCC 4 cut(s) 304, 439, 551, 1181
BmiI GGNNCC 7 cut(s) 143, 261, 552, 918, 1000, 1047, 1301
BmrFI CCNGG 3 cut(s) 14, 1029, 1070
BmsI GCATC 3 cut(s) 283, 1085, 1291
BpiI GAAGAC 2 cut(s) 81, 133
BpmI CTGGAG 1 cut(s) 962
Bpu10I CCTNAGC 2 cut(s) 608, 967
Bpu1102I GCTNAGC 1 cut(s) 1242
BpuEI CTTGAG 1 cut(s) 470
Bsa29I ATCGAT 1 cut(s) 908
BsaHI GRCGYC 1 cut(s) 951
BsaI GGTCTC 1 cut(s) 511
BsaJI CCNNGG 5 cut(s) 255, 1002, 1028, 1049, 1305
BsaWI WCCGGW 1 cut(s) 1183
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 1 cut(s) 1309
Bse1I ACTGG 2 cut(s) 89, 1319
Bse3DI GCAATG 2 cut(s) 57, 1014
BseAI TCCGGA 1 cut(s) 1183
BseBI CCWGG 3 cut(s) 14, 1029, 1070
BseCI ATCGAT 1 cut(s) 908
BseDI CCNNGG 5 cut(s) 255, 1002, 1028, 1049, 1305
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 1309
BseMI GCAATG 2 cut(s) 57, 1014
BseMII CTCAG 5 cut(s) 161, 296, 475, 981, 1256
BseNI ACTGG 2 cut(s) 89, 1319
BseRI GAGGAG 2 cut(s) 217, 808
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 4 cut(s) 922, 1135, 1183, 1205
BseYI CCCAGC 4 cut(s) 182, 380, 400, 931
Bsh1236I CGCG 1 cut(s) 1248
BshFI GGCC 2 cut(s) 441, 799
BshNI GGYRCC 2 cut(s) 916, 1045
BshVI ATCGAT 1 cut(s) 908
BsiHKAI GWGCWC 2 cut(s) 456, 765
BsiSI CCGG 3 cut(s) 800, 870, 1184
BslI CCNNNNNNNGG 1 cut(s) 1309
BsmAI GTCTC 3 cut(s) 439, 511, 1283
BsnI GGCC 2 cut(s) 441, 799
Bso31I GGTCTC 1 cut(s) 511
Bsp1286I GDGCHC 3 cut(s) 123, 456, 765
Bsp13I TCCGGA 1 cut(s) 1183
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 7 cut(s) 67, 94, 155, 821, 905, 971, 1299
Bsp1720I GCTNAGC 1 cut(s) 1242
Bsp19I CCATGG 2 cut(s) 255, 1305
BspACI CCGC 2 cut(s) 1274, 1310
BspANI GGCC 2 cut(s) 441, 799
BspCNI CTCAG 5 cut(s) 162, 295, 474, 980, 1255
BspDI ATCGAT 1 cut(s) 908
BspEI TCCGGA 1 cut(s) 1183
BspFNI CGCG 1 cut(s) 1248
BspHI TCATGA 2 cut(s) 757, 1285
BspLI GGNNCC 7 cut(s) 143, 261, 552, 918, 1000, 1047, 1301
BspPI GGATC 6 cut(s) 102, 829, 913, 979, 1294, 1307
BspT107I GGYRCC 2 cut(s) 916, 1045
BspTNI GGTCTC 1 cut(s) 511
BsrDI GCAATG 2 cut(s) 57, 1014
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 2 cut(s) 89, 1319
BssECI CCNNGG 5 cut(s) 255, 1002, 1028, 1049, 1305
BssMI GATC 7 cut(s) 67, 94, 155, 821, 905, 971, 1299
BssNI GRCGYC 1 cut(s) 951
BssT1I CCWWGG 3 cut(s) 255, 1002, 1305
Bst2UI CCWGG 3 cut(s) 14, 1029, 1070
Bst6I CTCTTC 3 cut(s) 102, 734, 1220
BstACI GRCGYC 1 cut(s) 951
BstAUI TGTACA 1 cut(s) 390
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 8 cut(s) 170, 282, 461, 608, 959, 967, 1175, 1242
BstDSI CCRYGG 2 cut(s) 255, 1305
BstF5I GGATG 1 cut(s) 276
BstFNI CGCG 1 cut(s) 1248
BstHHI GCGC 1 cut(s) 1248
BstKTI GATC 7 cut(s) 70, 97, 158, 824, 908, 974, 1302
BstMAI GTCTC 3 cut(s) 439, 511, 1283
BstMBI GATC 7 cut(s) 67, 94, 155, 821, 905, 971, 1299
BstMWI GCNNNNNNNGC 1 cut(s) 1013
BstNI CCWGG 3 cut(s) 14, 1029, 1070
BstNSI RCATGY 1 cut(s) 926
BstSCI CCNGG 3 cut(s) 12, 1027, 1068
BstSLI GKGCMC 1 cut(s) 123
BstUI CGCG 1 cut(s) 1248
BstV1I GCAGC 4 cut(s) 922, 1135, 1183, 1205
BstV2I GAAGAC 2 cut(s) 81, 133
BstX2I RGATCY 1 cut(s) 1299
BstYI RGATCY 1 cut(s) 1299
Bsu15I ATCGAT 1 cut(s) 908
BsuRI GGCC 2 cut(s) 441, 799
BsuTUI ATCGAT 1 cut(s) 908
BtgI CCRYGG 2 cut(s) 255, 1305
BtsCI GGATG 1 cut(s) 276
BtsI GCAGTG 1 cut(s) 854
BtsIMutI CAGTG 1 cut(s) 854
Cac8I GCNNGC 1 cut(s) 298
CciI TCATGA 2 cut(s) 757, 1285
CfoI GCGC 1 cut(s) 1248
Cfr13I GGNCC 4 cut(s) 304, 439, 551, 1181
ClaI ATCGAT 1 cut(s) 908
CseI GACGC 2 cut(s) 754, 940
Csp6I GTAC 4 cut(s) 286, 391, 495, 1054
CviQI GTAC 4 cut(s) 286, 391, 495, 1054
DdeI CTNAG 8 cut(s) 170, 282, 461, 608, 959, 967, 1175, 1242
DpnI GATC 7 cut(s) 69, 96, 157, 823, 907, 973, 1301
DpnII GATC 7 cut(s) 67, 94, 155, 821, 905, 971, 1299
Eam1104I CTCTTC 3 cut(s) 102, 734, 1220
EarI CTCTTC 3 cut(s) 102, 734, 1220
Ecl136II GAGCTC 1 cut(s) 454
Eco130I CCWWGG 3 cut(s) 255, 1002, 1305
Eco24I GRGCYC 1 cut(s) 456
Eco31I GGTCTC 1 cut(s) 511
Eco47I GGWCC 3 cut(s) 304, 551, 1181
Eco53kI GAGCTC 1 cut(s) 454
Eco57I CTGAAG 3 cut(s) 198, 498, 1079
EcoICRI GAGCTC 1 cut(s) 454
EcoRII CCWGG 3 cut(s) 12, 1027, 1068
EcoT14I CCWWGG 3 cut(s) 255, 1002, 1305
EcoT38I GRGCYC 1 cut(s) 456
ErhI CCWWGG 3 cut(s) 255, 1002, 1305
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 4 cut(s) 936, 1124, 1194, 1197
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 456
Fsp4HI GCNGC 4 cut(s) 936, 1124, 1194, 1197
FspBI CTAG 2 cut(s) 159, 1155
GlaI GCGC 1 cut(s) 1247
GluI GCNGC 4 cut(s) 936, 1124, 1194, 1197
GsaI CCCAGC 4 cut(s) 186, 384, 404, 935
GsuI CTGGAG 1 cut(s) 962
HaeIII GGCC 2 cut(s) 441, 799
HapII CCGG 3 cut(s) 800, 870, 1184
HgaI GACGC 2 cut(s) 754, 940
HhaI GCGC 1 cut(s) 1248
Hin1I GRCGYC 1 cut(s) 951
Hin6I GCGC 1 cut(s) 1246
HinP1I GCGC 1 cut(s) 1246
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HinfI GANTC 3 cut(s) 42, 396, 842
HpaII CCGG 3 cut(s) 800, 870, 1184
HphI GGTGA 3 cut(s) 16, 125, 211
Hpy166II GTNNAC 5 cut(s) 316, 655, 883, 928, 1110
Hpy188I TCNGA 8 cut(s) 216, 362, 478, 517, 567, 722, 847, 1098
Hpy188III TCNNGA 9 cut(s) 71, 159, 706, 758, 808, 969, 979, 1184, 1286
Hpy8I GTNNAC 5 cut(s) 316, 655, 883, 928, 1110
Hpy99I CGWCG 1 cut(s) 956
HpyAV CCTTC 6 cut(s) 84, 110, 370, 766, 1006, 1212
HpyCH4V TGCA 5 cut(s) 23, 151, 424, 938, 1193
HpyF10VI GCNNNNNNNGC 1 cut(s) 1013
HpyF3I CTNAG 8 cut(s) 170, 282, 461, 608, 959, 967, 1175, 1242
Hsp92I GRCGYC 1 cut(s) 951
HspAI GCGC 1 cut(s) 1246
Kpn2I TCCGGA 1 cut(s) 1183
Kzo9I GATC 7 cut(s) 67, 94, 155, 821, 905, 971, 1299
Lsp1109I GCAGC 4 cut(s) 922, 1135, 1183, 1205
LweI GCATC 3 cut(s) 283, 1085, 1291
MaeI CTAG 2 cut(s) 159, 1155
MalI GATC 7 cut(s) 69, 96, 157, 823, 907, 973, 1301
MboI GATC 7 cut(s) 67, 94, 155, 821, 905, 971, 1299
MboII GAAGA 7 cut(s) 86, 116, 119, 138, 504, 751, 1237
MfeI CAATTG 2 cut(s) 371, 555
MflI RGATCY 1 cut(s) 1299
MhlI GDGCHC 3 cut(s) 123, 456, 765
MluCI AATT 5 cut(s) 371, 555, 571, 602, 1139
MlyI GAGTC 2 cut(s) 51, 851
MroI TCCGGA 1 cut(s) 1183
MseI TTAA 3 cut(s) 485, 897, 1236
MslI CAYNNNNRTG 3 cut(s) 50, 237, 691
MspA1I CMGCKG 3 cut(s) 404, 935, 1196
MspI CCGG 3 cut(s) 800, 870, 1184
MspR9I CCNGG 3 cut(s) 14, 1029, 1070
MunI CAATTG 2 cut(s) 371, 555
MvaI CCWGG 3 cut(s) 14, 1029, 1070
MvnI CGCG 1 cut(s) 1248
MwoI GCNNNNNNNGC 1 cut(s) 1013
NcoI CCATGG 2 cut(s) 255, 1305
NdeII GATC 7 cut(s) 67, 94, 155, 821, 905, 971, 1299
NlaIV GGNNCC 7 cut(s) 143, 261, 552, 918, 1000, 1047, 1301
NmeAIII GCCGAG 1 cut(s) 1074
NspI RCATGY 1 cut(s) 926
PagI TCATGA 2 cut(s) 757, 1285
PciI ACATGT 1 cut(s) 922
PcsI WCGNNNNNNNCGW 1 cut(s) 726
PfeI GAWTC 1 cut(s) 396
PkrI GCNGC 4 cut(s) 937, 1125, 1195, 1198
PleI GAGTC 2 cut(s) 50, 850
PpsI GAGTC 2 cut(s) 50, 850
PscI ACATGT 1 cut(s) 922
Psp124BI GAGCTC 1 cut(s) 456
Psp6I CCWGG 3 cut(s) 12, 1027, 1068
PspFI CCCAGC 4 cut(s) 182, 380, 400, 931
PspGI CCWGG 3 cut(s) 12, 1027, 1068
PspN4I GGNNCC 7 cut(s) 143, 261, 552, 918, 1000, 1047, 1301
PspPI GGNCC 4 cut(s) 304, 439, 551, 1181
PsuI RGATCY 1 cut(s) 1299
PvuII CAGCTG 3 cut(s) 404, 935, 1196
RsaI GTAC 4 cut(s) 287, 392, 496, 1055
RsaNI GTAC 4 cut(s) 286, 391, 495, 1054
RseI CAYNNNNRTG 3 cut(s) 50, 237, 691
SacI GAGCTC 1 cut(s) 456
SalI GTCGAC 1 cut(s) 653
SaqAI TTAA 3 cut(s) 485, 897, 1236
SatI GCNGC 4 cut(s) 936, 1124, 1194, 1197
Sau3AI GATC 7 cut(s) 67, 94, 155, 821, 905, 971, 1299
Sau96I GGNCC 4 cut(s) 304, 439, 551, 1181
SchI GAGTC 2 cut(s) 51, 851
ScrFI CCNGG 3 cut(s) 14, 1029, 1070
SduI GDGCHC 3 cut(s) 123, 456, 765
SfaNI GCATC 3 cut(s) 283, 1085, 1291
SinI GGWCC 3 cut(s) 304, 551, 1181
SmiMI CAYNNNNRTG 3 cut(s) 50, 237, 691
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 5 cut(s) 371, 555, 571, 602, 1139
SsiI CCGC 2 cut(s) 1274, 1310
SspMI CTAG 2 cut(s) 159, 1155
SstI GAGCTC 1 cut(s) 456
StyD4I CCNGG 3 cut(s) 12, 1027, 1068
StyI CCWWGG 3 cut(s) 255, 1002, 1305
TaqI TCGA 5 cut(s) 66, 654, 729, 824, 908
TasI AATT 5 cut(s) 371, 555, 571, 602, 1139
TatI WGTACW 1 cut(s) 390
TfiI GAWTC 1 cut(s) 396
Tru1I TTAA 3 cut(s) 485, 897, 1236
Tru9I TTAA 3 cut(s) 485, 897, 1236
TscAI CASTG 1 cut(s) 861
TseI GCWGC 4 cut(s) 935, 1123, 1193, 1196
TspDTI ATGAA 4 cut(s) 265, 369, 629, 1025
TspGWI ACGGA 1 cut(s) 1011
TspRI CASTG 1 cut(s) 861
VpaK11BI GGWCC 3 cut(s) 304, 551, 1181
XapI RAATTY 1 cut(s) 602
XbaI TCTAGA 1 cut(s) 158
XceI RCATGY 1 cut(s) 926
XmiI GTMKAC 1 cut(s) 654
XspI CTAG 2 cut(s) 159, 1155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.