Rmu_sc0007864.1_g000004

Vicilin-like antimicrobial peptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007864.1
OG0001754
Physical Location & Seq
Reverse (-)
14481 .. 16323
1843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007864.1_g000004.1.cds

Sequence Viewer

Length: 1401 bp
atggtgagcgtcctggttcttgcacttgtgatgtgctttggagtcatggcaatggctatgagcttcgatcacgaagacgaggactggcgaagggatcatagggaagaagagtgggaagggcacagaagacatcaccattggttccttttgcaacgatctagactactgctgagaactgaagctggggaaatgagggtggtgaggagtgtaggtcggagaatggtcaatagacatataaatgttgggtttctctccatgaaacccaactctcttttcatccctcagtaccttgactccagcgtggtcctctttgtccacacagggcaagcaaatgtgggactagtgcaccgacatgaactcggagagaggcaattaaaggctggggatttgtacagaatcccagctggttcaacattttacttgcagaatgttggggagggccagagacttgagctcattctcagcattgacacatctgacagtttgagaatgggtactttggagaatttcttcattggtggaggaaactacccgaaatctgtcattgctgggtttgactctgaaatactcagaaatgcatttaacgtctcatcttcagaactaaggcaggttttgacaaggcaacaagagggtccaattatatctttaaataattctcaatcatcatcaaacctttggacaaaattcctaagcatgaaagagcaggacagactacaagaactaaagaaaatggtcgacttcccacaagaacaagagcaaacccaaacatggtcatggaggaaactcttgaactctatgttcggaacaatcgaaaaagagaagagaaagcagaatcatcatgagcactcccaggaggcttacaacctctatgagaggaggccagatttcaagaacaactatggatcaagcttggcagttgatgagtctgattactcaccgctacaaaactccggcattggcgtttaccttgtcaatcttaacgcaggatcgatgttggcaccacatgtgaacccaacagcaacagaatacggcgtcgttctaagaggctcgggatcactccagattgtgtttccaaatggaaccttggcaatgaaggcgaaactaaaaccagggagagtgttctgggtgcctcggtacttcccatttgtccaagtggcatctaacaacgaaaaacttgagatttttggattcactacctcggcacagccgaaccggccacagtttttggccggttctagctcggtgcttgaagctctaagaggtccggaacttgcagctgcttttggtgtgagtgaggaaaggttgaatcgttttgttaatgctcagcgcgaagctgtaatcttgccttacaatgcggagaggcatcatgagacacatgggatccccatggcggactggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0030054 GO:0043207 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0098542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

466

Amino Acids

53.13

Weight (kDa)

7.34

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 598
AccB1I GGYRCC 2 cut(s) 997, 1126
AccI GTMKAC 1 cut(s) 735
AccII CGCG 1 cut(s) 1329
AccIII TCCGGA 1 cut(s) 1264
AciI CCGC 3 cut(s) 938, 1355, 1391
AclWI GGATC 6 cut(s) 102, 910, 994, 1060, 1375, 1388
AcoI YGGCCR 2 cut(s) 1214, 1227
AcsI RAATTY 2 cut(s) 505, 683
AcuI CTGAAG 2 cut(s) 198, 579
AcyI GRCGYC 1 cut(s) 1032
AfaI GTAC 4 cut(s) 287, 392, 496, 1136
AfiI CCNNNNNNNGG 2 cut(s) 768, 1390
AflIII ACRYGT 1 cut(s) 1003
AgsI TTSAA 5 cut(s) 411, 790, 889, 1250, 1306
AhlI ACTAGT 1 cut(s) 340
AjnI CCWGG 3 cut(s) 12, 849, 1108
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 9 cut(s) 63, 182, 404, 454, 909, 1239, 1253, 1277, 1334
AluI AGCT 9 cut(s) 63, 182, 404, 454, 909, 1239, 1253, 1277, 1334
Alw21I GWGCWC 3 cut(s) 348, 456, 846
Alw26I GTCTC 3 cut(s) 439, 592, 1364
Alw44I GTGCAC 1 cut(s) 344
AlwI GGATC 6 cut(s) 102, 910, 994, 1060, 1375, 1388
Ama87I CYCGRG 1 cut(s) 1048
Aor13HI TCCGGA 1 cut(s) 1264
AoxI GGCC 4 cut(s) 439, 878, 1214, 1227
ApaLI GTGCAC 1 cut(s) 344
ApeKI GCWGC 2 cut(s) 1274, 1277
ApoI RAATTY 2 cut(s) 505, 683
Asp700I GAANNNNTTC 1 cut(s) 509
AspLEI GCGC 1 cut(s) 1329
AspS9I GGNCC 4 cut(s) 304, 439, 632, 1262
AsuHPI GGTGA 4 cut(s) 16, 125, 211, 927
AvaI CYCGRG 1 cut(s) 1048
AvaII GGWCC 3 cut(s) 304, 632, 1262
BaeGI GKGCMC 2 cut(s) 123, 348
BamHI GGATCC 1 cut(s) 1380
BanI GGYRCC 2 cut(s) 997, 1126
BanII GRGCYC 1 cut(s) 456
BbsI GAAGAC 2 cut(s) 81, 133
Bbv12I GWGCWC 3 cut(s) 348, 456, 846
BbvI GCAGC 2 cut(s) 1264, 1286
BceAI ACGGC 1 cut(s) 1045
BciT130I CCWGG 3 cut(s) 14, 851, 1110
BcoDI GTCTC 3 cut(s) 439, 592, 1364
BcuI ACTAGT 1 cut(s) 340
BfaI CTAG 3 cut(s) 159, 341, 1236
BfuAI ACCTGC 1 cut(s) 598
BglI GCCNNNNNGGC 1 cut(s) 1213
BisI GCNGC 2 cut(s) 1275, 1278
BlpI GCTNAGC 1 cut(s) 1323
BlsI GCNGC 2 cut(s) 1276, 1279
Bme1390I CCNGG 3 cut(s) 14, 851, 1110
Bme18I GGWCC 3 cut(s) 304, 632, 1262
BmeT110I CYCGRG 1 cut(s) 1048
BmgT120I GGNCC 4 cut(s) 304, 439, 632, 1262
BmiI GGNNCC 6 cut(s) 143, 633, 999, 1081, 1128, 1382
BmrFI CCNGG 3 cut(s) 14, 851, 1110
BmsI GCATC 2 cut(s) 1166, 1372
BpiI GAAGAC 2 cut(s) 81, 133
BpmI CTGGAG 2 cut(s) 280, 1043
Bpu10I CCTNAGC 1 cut(s) 689
Bpu1102I GCTNAGC 1 cut(s) 1323
BpuEI CTTGAG 2 cut(s) 470, 1196
Bsa29I ATCGAT 1 cut(s) 989
BsaHI GRCGYC 1 cut(s) 1032
BsaJI CCNNGG 6 cut(s) 849, 1083, 1109, 1130, 1197, 1386
BsaWI WCCGGW 1 cut(s) 1264
BsaXI ACNNNNNCTCC 4 cut(s) 196, 226, 278, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 768, 1390
Bse118I RCCGGY 2 cut(s) 1212, 1229
Bse1I ACTGG 2 cut(s) 89, 1400
Bse3DI GCAATG 3 cut(s) 57, 543, 1095
BseAI TCCGGA 1 cut(s) 1264
BseBI CCWGG 3 cut(s) 14, 851, 1110
BseCI ATCGAT 1 cut(s) 989
BseDI CCNNGG 6 cut(s) 849, 1083, 1109, 1130, 1197, 1386
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 768, 1390
BseMI GCAATG 3 cut(s) 57, 543, 1095
BseMII CTCAG 5 cut(s) 161, 296, 475, 583, 1337
BseNI ACTGG 2 cut(s) 89, 1400
BseRI GAGGAG 2 cut(s) 217, 889
BseSI GKGCMC 2 cut(s) 123, 348
BseXI GCAGC 2 cut(s) 1264, 1286
BseYI CCCAGC 4 cut(s) 182, 380, 400, 548
Bsh1236I CGCG 1 cut(s) 1329
BshFI GGCC 4 cut(s) 441, 880, 1216, 1229
BshNI GGYRCC 2 cut(s) 997, 1126
BshVI ATCGAT 1 cut(s) 989
BsiHKAI GWGCWC 3 cut(s) 348, 456, 846
BsiHKCI CYCGRG 1 cut(s) 1048
BsiSI CCGG 4 cut(s) 951, 1213, 1230, 1265
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 2 cut(s) 768, 1390
BsmAI GTCTC 3 cut(s) 439, 592, 1364
BsmBI CGTCTC 1 cut(s) 592
BsmFI GGGAC 1 cut(s) 351
BsnI GGCC 4 cut(s) 441, 880, 1216, 1229
BsoBI CYCGRG 1 cut(s) 1048
Bsp1286I GDGCHC 4 cut(s) 123, 348, 456, 846
Bsp13I TCCGGA 1 cut(s) 1264
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 7 cut(s) 67, 94, 155, 902, 986, 1052, 1380
Bsp1720I GCTNAGC 1 cut(s) 1323
Bsp19I CCATGG 1 cut(s) 1386
BspACI CCGC 3 cut(s) 938, 1355, 1391
BspANI GGCC 4 cut(s) 441, 880, 1216, 1229
BspCNI CTCAG 5 cut(s) 162, 295, 474, 582, 1336
BspDI ATCGAT 1 cut(s) 989
BspEI TCCGGA 1 cut(s) 1264
BspFNI CGCG 1 cut(s) 1329
BspHI TCATGA 2 cut(s) 838, 1366
BspLI GGNNCC 6 cut(s) 143, 633, 999, 1081, 1128, 1382
BspMI ACCTGC 1 cut(s) 598
BspPI GGATC 6 cut(s) 102, 910, 994, 1060, 1375, 1388
BspT107I GGYRCC 2 cut(s) 997, 1126
BsrDI GCAATG 3 cut(s) 57, 543, 1095
BsrFI RCCGGY 2 cut(s) 1212, 1229
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 2 cut(s) 89, 1400
BssAI RCCGGY 2 cut(s) 1212, 1229
BssECI CCNNGG 6 cut(s) 849, 1083, 1109, 1130, 1197, 1386
BssMI GATC 7 cut(s) 67, 94, 155, 902, 986, 1052, 1380
BssNI GRCGYC 1 cut(s) 1032
BssT1I CCWWGG 2 cut(s) 1083, 1386
Bst2UI CCWGG 3 cut(s) 14, 851, 1110
Bst4CI ACNGT 2 cut(s) 482, 1221
Bst6I CTCTTC 2 cut(s) 102, 815
BstACI GRCGYC 1 cut(s) 1032
BstAUI TGTACA 1 cut(s) 390
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 9 cut(s) 170, 282, 461, 569, 602, 689, 1040, 1256, 1323
BstDSI CCRYGG 1 cut(s) 1386
BstF5I GGATG 1 cut(s) 276
BstFNI CGCG 1 cut(s) 1329
BstHHI GCGC 1 cut(s) 1329
BstKTI GATC 7 cut(s) 70, 97, 158, 905, 989, 1055, 1383
BstMAI GTCTC 3 cut(s) 439, 592, 1364
BstMBI GATC 7 cut(s) 67, 94, 155, 902, 986, 1052, 1380
BstMWI GCNNNNNNNGC 2 cut(s) 1094, 1213
BstNI CCWGG 3 cut(s) 14, 851, 1110
BstNSI RCATGY 1 cut(s) 1007
BstSCI CCNGG 3 cut(s) 12, 849, 1108
BstSLI GKGCMC 2 cut(s) 123, 348
BstUI CGCG 1 cut(s) 1329
BstV1I GCAGC 2 cut(s) 1264, 1286
BstV2I GAAGAC 2 cut(s) 81, 133
BstX2I RGATCY 1 cut(s) 1380
BstYI RGATCY 1 cut(s) 1380
Bsu15I ATCGAT 1 cut(s) 989
BsuRI GGCC 4 cut(s) 441, 880, 1216, 1229
BsuTUI ATCGAT 1 cut(s) 989
BtgI CCRYGG 1 cut(s) 1386
BtsCI GGATG 1 cut(s) 276
BveI ACCTGC 1 cut(s) 598
Cac8I GCNNGC 1 cut(s) 327
CciI TCATGA 2 cut(s) 838, 1366
CfoI GCGC 1 cut(s) 1329
Cfr10I RCCGGY 2 cut(s) 1212, 1229
Cfr13I GGNCC 4 cut(s) 304, 439, 632, 1262
ClaI ATCGAT 1 cut(s) 989
CseI GACGC 1 cut(s) 1021
Csp6I GTAC 4 cut(s) 286, 391, 495, 1135
CspCI CAANNNNNGTGG 2 cut(s) 1206, 1241
CviQI GTAC 4 cut(s) 286, 391, 495, 1135
DdeI CTNAG 9 cut(s) 170, 282, 461, 569, 602, 689, 1040, 1256, 1323
DpnI GATC 7 cut(s) 69, 96, 157, 904, 988, 1054, 1382
DpnII GATC 7 cut(s) 67, 94, 155, 902, 986, 1052, 1380
DraI TTTAAA 1 cut(s) 648
EaeI YGGCCR 2 cut(s) 1214, 1227
Eam1104I CTCTTC 2 cut(s) 102, 815
EarI CTCTTC 2 cut(s) 102, 815
Ecl136II GAGCTC 1 cut(s) 454
Eco130I CCWWGG 2 cut(s) 1083, 1386
Eco24I GRGCYC 1 cut(s) 456
Eco47I GGWCC 3 cut(s) 304, 632, 1262
Eco53kI GAGCTC 1 cut(s) 454
Eco57I CTGAAG 2 cut(s) 198, 579
Eco88I CYCGRG 1 cut(s) 1048
EcoICRI GAGCTC 1 cut(s) 454
EcoRII CCWGG 3 cut(s) 12, 849, 1108
EcoT14I CCWWGG 2 cut(s) 1083, 1386
EcoT22I ATGCAT 1 cut(s) 580
EcoT38I GRGCYC 1 cut(s) 456
ErhI CCWWGG 2 cut(s) 1083, 1386
Esp3I CGTCTC 1 cut(s) 592
FaqI GGGAC 1 cut(s) 351
FblI GTMKAC 1 cut(s) 735
Fnu4HI GCNGC 2 cut(s) 1275, 1278
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 456
Fsp4HI GCNGC 2 cut(s) 1275, 1278
FspBI CTAG 3 cut(s) 159, 341, 1236
GlaI GCGC 1 cut(s) 1328
GluI GCNGC 2 cut(s) 1275, 1278
GsaI CCCAGC 4 cut(s) 186, 384, 404, 552
GsuI CTGGAG 2 cut(s) 280, 1043
HaeIII GGCC 4 cut(s) 441, 880, 1216, 1229
HapII CCGG 4 cut(s) 951, 1213, 1230, 1265
HgaI GACGC 1 cut(s) 1021
HhaI GCGC 1 cut(s) 1329
Hin1I GRCGYC 1 cut(s) 1032
Hin6I GCGC 1 cut(s) 1327
HinP1I GCGC 1 cut(s) 1327
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HindIII AAGCTT 1 cut(s) 907
HinfI GANTC 8 cut(s) 42, 293, 396, 557, 832, 923, 1188, 1306
HpaII CCGG 4 cut(s) 951, 1213, 1230, 1265
HphI GGTGA 4 cut(s) 16, 125, 211, 927
Hpy166II GTNNAC 5 cut(s) 316, 346, 736, 964, 1009
Hpy188I TCNGA 8 cut(s) 216, 362, 478, 562, 572, 598, 803, 928
Hpy188III TCNNGA 9 cut(s) 71, 159, 787, 839, 889, 1050, 1060, 1265, 1367
Hpy8I GTNNAC 5 cut(s) 316, 346, 736, 964, 1009
Hpy99I CGWCG 1 cut(s) 1037
HpyAV CCTTC 3 cut(s) 84, 110, 1087
HpyCH4III ACNGT 2 cut(s) 482, 1221
HpyCH4IV ACGT 1 cut(s) 585
HpyCH4V TGCA 6 cut(s) 23, 151, 346, 424, 578, 1274
HpyF10VI GCNNNNNNNGC 2 cut(s) 1094, 1213
HpyF3I CTNAG 9 cut(s) 170, 282, 461, 569, 602, 689, 1040, 1256, 1323
HpySE526I ACGT 1 cut(s) 585
Hsp92I GRCGYC 1 cut(s) 1032
HspAI GCGC 1 cut(s) 1327
Kpn2I TCCGGA 1 cut(s) 1264
Kzo9I GATC 7 cut(s) 67, 94, 155, 902, 986, 1052, 1380
Lsp1109I GCAGC 2 cut(s) 1264, 1286
LweI GCATC 2 cut(s) 1166, 1372
MaeI CTAG 3 cut(s) 159, 341, 1236
MaeII ACGT 1 cut(s) 585
MalI GATC 7 cut(s) 69, 96, 157, 904, 988, 1054, 1382
MboI GATC 7 cut(s) 67, 94, 155, 902, 986, 1052, 1380
MboII GAAGA 7 cut(s) 86, 116, 119, 138, 502, 585, 832
MflI RGATCY 1 cut(s) 1380
MhlI GDGCHC 4 cut(s) 123, 348, 456, 846
MluCI AATT 5 cut(s) 371, 505, 636, 652, 683
MlyI GAGTC 4 cut(s) 51, 287, 551, 932
MmeI TCCRAC 1 cut(s) 194
Mph1103I ATGCAT 1 cut(s) 580
MroI TCCGGA 1 cut(s) 1264
MroXI GAANNNNTTC 1 cut(s) 509
MseI TTAA 5 cut(s) 374, 582, 647, 978, 1317
MslI CAYNNNNRTG 4 cut(s) 50, 237, 351, 772
MspA1I CMGCKG 2 cut(s) 404, 1277
MspI CCGG 4 cut(s) 951, 1213, 1230, 1265
MspR9I CCNGG 3 cut(s) 14, 851, 1110
MvaI CCWGG 3 cut(s) 14, 851, 1110
MvnI CGCG 1 cut(s) 1329
MwoI GCNNNNNNNGC 2 cut(s) 1094, 1213
NcoI CCATGG 1 cut(s) 1386
NdeII GATC 7 cut(s) 67, 94, 155, 902, 986, 1052, 1380
NlaIV GGNNCC 6 cut(s) 143, 633, 999, 1081, 1128, 1382
NmeAIII GCCGAG 1 cut(s) 1178
NsiI ATGCAT 1 cut(s) 580
NspI RCATGY 1 cut(s) 1007
PagI TCATGA 2 cut(s) 838, 1366
PciI ACATGT 1 cut(s) 1003
PcsI WCGNNNNNNNCGW 2 cut(s) 807, 1205
PdmI GAANNNNTTC 1 cut(s) 509
PfeI GAWTC 4 cut(s) 396, 832, 1188, 1306
PkrI GCNGC 2 cut(s) 1276, 1279
PleI GAGTC 4 cut(s) 50, 287, 551, 931
PpsI GAGTC 4 cut(s) 50, 287, 551, 931
PscI ACATGT 1 cut(s) 1003
Psp124BI GAGCTC 1 cut(s) 456
Psp6I CCWGG 3 cut(s) 12, 849, 1108
PspFI CCCAGC 4 cut(s) 182, 380, 400, 548
PspGI CCWGG 3 cut(s) 12, 849, 1108
PspN4I GGNNCC 6 cut(s) 143, 633, 999, 1081, 1128, 1382
PspPI GGNCC 4 cut(s) 304, 439, 632, 1262
PsuI RGATCY 1 cut(s) 1380
PvuII CAGCTG 2 cut(s) 404, 1277
RsaI GTAC 4 cut(s) 287, 392, 496, 1136
RsaNI GTAC 4 cut(s) 286, 391, 495, 1135
RseI CAYNNNNRTG 4 cut(s) 50, 237, 351, 772
SacI GAGCTC 1 cut(s) 456
SalI GTCGAC 1 cut(s) 734
SaqAI TTAA 5 cut(s) 374, 582, 647, 978, 1317
SatI GCNGC 2 cut(s) 1275, 1278
Sau3AI GATC 7 cut(s) 67, 94, 155, 902, 986, 1052, 1380
Sau96I GGNCC 4 cut(s) 304, 439, 632, 1262
SchI GAGTC 4 cut(s) 51, 287, 551, 932
ScrFI CCNGG 3 cut(s) 14, 851, 1110
SduI GDGCHC 4 cut(s) 123, 348, 456, 846
SfaNI GCATC 2 cut(s) 1166, 1372
SinI GGWCC 3 cut(s) 304, 632, 1262
SmiMI CAYNNNNRTG 4 cut(s) 50, 237, 351, 772
SmlI CTYRAG 2 cut(s) 449, 1175
SmoI CTYRAG 2 cut(s) 449, 1175
SpeI ACTAGT 1 cut(s) 340
Sse9I AATT 5 cut(s) 371, 505, 636, 652, 683
SsiI CCGC 3 cut(s) 938, 1355, 1391
SspMI CTAG 3 cut(s) 159, 341, 1236
SstI GAGCTC 1 cut(s) 456
StyD4I CCNGG 3 cut(s) 12, 849, 1108
StyI CCWWGG 2 cut(s) 1083, 1386
TaaI ACNGT 2 cut(s) 482, 1221
TaiI ACGT 1 cut(s) 588
TaqI TCGA 4 cut(s) 66, 735, 810, 989
TasI AATT 5 cut(s) 371, 505, 636, 652, 683
TatI WGTACW 1 cut(s) 390
TfiI GAWTC 4 cut(s) 396, 832, 1188, 1306
Tru1I TTAA 5 cut(s) 374, 582, 647, 978, 1317
Tru9I TTAA 5 cut(s) 374, 582, 647, 978, 1317
TseI GCWGC 2 cut(s) 1274, 1277
TspDTI ATGAA 6 cut(s) 265, 272, 369, 502, 710, 1106
VneI GTGCAC 1 cut(s) 344
VpaK11BI GGWCC 3 cut(s) 304, 632, 1262
XapI RAATTY 2 cut(s) 505, 683
XbaI TCTAGA 1 cut(s) 158
XceI RCATGY 1 cut(s) 1007
XmiI GTMKAC 1 cut(s) 735
XmnI GAANNNNTTC 1 cut(s) 509
XspI CTAG 3 cut(s) 159, 341, 1236
Zsp2I ATGCAT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.