Rmu_sc0007864.1_g000006

Vicilin-like antimicrobial peptides

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007864.1
Physical Location & Seq
Reverse (-)
28126 .. 30252
2127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007864.1_g000006.1.cds

Sequence Viewer

Length: 1410 bp
atgggaaacagagtgatggtgagcctcctggttcttgtgcttgtgctttcctatggagttatggcaatggctatgaggtttaatcatgaagatgaagagtggggaagagatcagagagaagaagagtgggaagggcaccgagggcatcgccatcttttccttttgcaacaatcaaggctcctggtgaaaactgaagctggccaaatgagggtggtgagaagtgtaggtcagagaatggtagataggcatataaatgttgcctatctcaccttggaacctaactccctcttcatcccccagtacctcgactccagcttgatcctctttgtccaaagagggcaagcaaatgtgggactggtacaccgacaggaattgggggagagacaattgaaggctggggatgtgtacagaattccagcaggttccacgttttacttgcagaatgtcagggagaacaggagacttcagatcattctcagcatcgacacatctgacagtttgagaatgggtactttggagaatttcttcattggtggaggaacctacccaaaatctgtactttctgggttcgattctgagatactcacaaatgcatttaacgtctcatcttcagaaataaggcaggttttgactaggcaccaagagggtccaattatatatctaaataattcccaatcatcatcaaacctttggaccaaattcgtaagcatgaaagagcaggacagactacaagaattgaagaaaatggtggacttcccagaagaaccagagcaaaccctaacttggtcatggaagaaactgttgaactccgtgttcggaacacttgaaaatgaggagaggaagcaacagcatcatgagcactcccagaaatcctacaacctctatgatagaaagccagatttcaagaacaaccatggatggaccctctcagttgatgagtctgattactctcccctaaaggactccggcattggcgtttaccttgttagtctcaacgcagggtcaatgttggcaccacatgtgaacccaagagcaacagaatacggcgtcgttctgagaggctcaggatcactgcagattgtatttccaaatggtaccttggcaatgaaggcgaaactaaagccagggagagtgttttgggtgccaaggtatttcccatttgtccaagtggcatctaacaacgagcaacttgagatttttgggttcactacctcagcacagccgaaccggccacagtttttggctggttctagctcggtgctgcaagctctaagaggtcaagaacttgcagcggcttttggtgtgagtgagggaaggttgaatcattttgttaatgctcagcgcgaagctgtcattttgccatacaatgcagagaggaatcaaaaggcagatgggatggcagatcggtga
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

469

Amino Acids

53.33

Weight (kDa)

8.53

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 410, 613
Acc65I GGTACC 1 cut(s) 1094
AccB1I GGYRCC 5 cut(s) 135, 636, 1012, 1094, 1141
AccII CGCG 1 cut(s) 1344
AciI CCGC 1 cut(s) 1292
AclWI GGATC 2 cut(s) 313, 1075
AcoI YGGCCR 2 cut(s) 199, 1229
AcsI RAATTY 3 cut(s) 411, 520, 698
AcuI CTGAAG 3 cut(s) 213, 449, 594
AcyI GRCGYC 1 cut(s) 1047
AfaI GTAC 6 cut(s) 302, 360, 407, 511, 558, 1096
AfiI CCNNNNNNNGG 2 cut(s) 208, 783
AflIII ACRYGT 1 cut(s) 1018
AgsI TTSAA 6 cut(s) 391, 739, 805, 827, 904, 1321
AjnI CCWGG 3 cut(s) 27, 180, 1123
AluBI AGCT 5 cut(s) 197, 315, 1254, 1268, 1349
AluI AGCT 5 cut(s) 197, 315, 1254, 1268, 1349
Alw21I GWGCWC 1 cut(s) 861
Alw26I GTCTC 4 cut(s) 376, 454, 607, 995
AlwI GGATC 2 cut(s) 313, 1075
AoxI GGCC 2 cut(s) 199, 1229
ApeKI GCWGC 2 cut(s) 1261, 1289
ApoI RAATTY 3 cut(s) 411, 520, 698
Asp700I GAANNNNTTC 1 cut(s) 524
Asp718I GGTACC 1 cut(s) 1094
AspLEI GCGC 1 cut(s) 1344
AspS9I GGNCC 3 cut(s) 647, 693, 921
AsuHPI GGTGA 4 cut(s) 31, 196, 226, 259
AvaII GGWCC 3 cut(s) 647, 693, 921
BaeGI GKGCMC 1 cut(s) 138
BalI TGGCCA 1 cut(s) 201
BanI GGYRCC 5 cut(s) 135, 636, 1012, 1094, 1141
Bbv12I GWGCWC 1 cut(s) 861
BbvCI CCTCAGC 1 cut(s) 1213
BbvI GCAGC 2 cut(s) 1248, 1301
BccI CCATC 5 cut(s) 10, 159, 912, 1385, 1390
BceAI ACGGC 1 cut(s) 1060
BciT130I CCWGG 3 cut(s) 29, 182, 1125
BcoDI GTCTC 4 cut(s) 376, 454, 607, 995
BfaI CTAG 2 cut(s) 633, 1251
BfmI CTRYAG 1 cut(s) 1073
BfuAI ACCTGC 2 cut(s) 410, 613
BglI GCCNNNNNGGC 1 cut(s) 1228
BisI GCNGC 3 cut(s) 1262, 1290, 1293
BlpI GCTNAGC 1 cut(s) 1338
BlsI GCNGC 3 cut(s) 1263, 1291, 1294
Bme1390I CCNGG 3 cut(s) 29, 182, 1125
Bme18I GGWCC 3 cut(s) 647, 693, 921
BmgT120I GGNCC 3 cut(s) 647, 693, 921
BmrFI CCNGG 3 cut(s) 29, 182, 1125
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 4 cut(s) 154, 489, 859, 1181
BmuI ACTGGG 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 295
Bpu10I CCTNAGC 2 cut(s) 1063, 1213
Bpu1102I GCTNAGC 1 cut(s) 1338
BpuEI CTTGAG 1 cut(s) 1211
BsaHI GRCGYC 1 cut(s) 1047
BsaJI CCNNGG 6 cut(s) 139, 270, 913, 1098, 1124, 1145
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 783
Bse118I RCCGGY 1 cut(s) 1227
Bse1I ACTGG 2 cut(s) 298, 360
Bse3DI GCAATG 2 cut(s) 72, 1110
BseBI CCWGG 3 cut(s) 29, 182, 1125
BseDI CCNNGG 6 cut(s) 139, 270, 913, 1098, 1124, 1145
BseGI GGATG 4 cut(s) 291, 406, 923, 1401
BseLI CCNNNNNNNGG 2 cut(s) 208, 783
BseMI GCAATG 2 cut(s) 72, 1110
BseMII CTCAG 7 cut(s) 490, 567, 942, 1046, 1077, 1227, 1352
BseNI ACTGG 2 cut(s) 298, 360
BseRI GAGGAG 1 cut(s) 848
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 2 cut(s) 1248, 1301
BseYI CCCAGC 1 cut(s) 395
Bsh1236I CGCG 1 cut(s) 1344
BshFI GGCC 2 cut(s) 201, 1231
BshNI GGYRCC 5 cut(s) 135, 636, 1012, 1094, 1141
BsiHKAI GWGCWC 1 cut(s) 861
BsiSI CCGG 2 cut(s) 966, 1228
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 2 cut(s) 208, 783
BsmAI GTCTC 4 cut(s) 376, 454, 607, 995
BsmBI CGTCTC 1 cut(s) 607
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 2 cut(s) 201, 1231
Bsp1286I GDGCHC 2 cut(s) 138, 861
Bsp1407I TGTACA 1 cut(s) 405
Bsp143I GATC 5 cut(s) 109, 318, 468, 1067, 1402
Bsp1720I GCTNAGC 1 cut(s) 1338
Bsp19I CCATGG 1 cut(s) 913
BspACI CCGC 1 cut(s) 1292
BspANI GGCC 2 cut(s) 201, 1231
BspCNI CTCAG 7 cut(s) 489, 568, 941, 1047, 1076, 1226, 1351
BspFNI CGCG 1 cut(s) 1344
BspHI TCATGA 2 cut(s) 85, 853
BspMAI CTGCAG 1 cut(s) 1077
BspMI ACCTGC 2 cut(s) 410, 613
BspPI GGATC 2 cut(s) 313, 1075
BspT107I GGYRCC 5 cut(s) 135, 636, 1012, 1094, 1141
BsrDI GCAATG 2 cut(s) 72, 1110
BsrFI RCCGGY 1 cut(s) 1227
BsrGI TGTACA 1 cut(s) 405
BsrI ACTGG 2 cut(s) 298, 360
BssAI RCCGGY 1 cut(s) 1227
BssECI CCNNGG 6 cut(s) 139, 270, 913, 1098, 1124, 1145
BssMI GATC 5 cut(s) 109, 318, 468, 1067, 1402
BssNI GRCGYC 1 cut(s) 1047
BssT1I CCWWGG 4 cut(s) 270, 913, 1098, 1145
Bst2UI CCWGG 3 cut(s) 29, 182, 1125
Bst4CI ACNGT 3 cut(s) 497, 801, 1236
Bst6I CTCTTC 4 cut(s) 90, 100, 117, 293
BstACI GRCGYC 1 cut(s) 1047
BstAUI TGTACA 1 cut(s) 405
BstC8I GCNNGC 3 cut(s) 199, 342, 1266
BstDEI CTNAG 8 cut(s) 476, 576, 928, 1055, 1063, 1213, 1271, 1338
BstDSI CCRYGG 1 cut(s) 913
BstF5I GGATG 4 cut(s) 291, 406, 923, 1401
BstFNI CGCG 1 cut(s) 1344
BstHHI GCGC 1 cut(s) 1344
BstKTI GATC 5 cut(s) 112, 321, 471, 1070, 1405
BstMAI GTCTC 4 cut(s) 376, 454, 607, 995
BstMBI GATC 5 cut(s) 109, 318, 468, 1067, 1402
BstMWI GCNNNNNNNGC 4 cut(s) 142, 856, 1109, 1228
BstNI CCWGG 3 cut(s) 29, 182, 1125
BstNSI RCATGY 1 cut(s) 1022
BstSCI CCNGG 3 cut(s) 27, 180, 1123
BstSFI CTRYAG 1 cut(s) 1073
BstSLI GKGCMC 1 cut(s) 138
BstUI CGCG 1 cut(s) 1344
BstV1I GCAGC 2 cut(s) 1248, 1301
BsuRI GGCC 2 cut(s) 201, 1231
BtgI CCRYGG 1 cut(s) 913
BtgZI GCGATG 1 cut(s) 131
BtsCI GGATG 4 cut(s) 291, 406, 923, 1401
BtsI GCAGTG 1 cut(s) 1070
BtsIMutI CAGTG 1 cut(s) 1070
BveI ACCTGC 2 cut(s) 410, 613
Cac8I GCNNGC 3 cut(s) 199, 342, 1266
CciI TCATGA 2 cut(s) 85, 853
CfoI GCGC 1 cut(s) 1344
Cfr10I RCCGGY 1 cut(s) 1227
Cfr13I GGNCC 3 cut(s) 647, 693, 921
CseI GACGC 1 cut(s) 1036
Csp6I GTAC 6 cut(s) 301, 359, 406, 510, 557, 1095
CspCI CAANNNNNGTGG 2 cut(s) 1221, 1256
CviAII CATG 6 cut(s) 86, 709, 789, 854, 914, 1019
CviQI GTAC 6 cut(s) 301, 359, 406, 510, 557, 1095
DdeI CTNAG 8 cut(s) 476, 576, 928, 1055, 1063, 1213, 1271, 1338
DpnI GATC 5 cut(s) 111, 320, 470, 1069, 1404
DpnII GATC 5 cut(s) 109, 318, 468, 1067, 1402
EaeI YGGCCR 2 cut(s) 199, 1229
Eam1104I CTCTTC 4 cut(s) 90, 100, 117, 293
EarI CTCTTC 4 cut(s) 90, 100, 117, 293
Eco130I CCWWGG 4 cut(s) 270, 913, 1098, 1145
Eco47I GGWCC 3 cut(s) 647, 693, 921
Eco57I CTGAAG 3 cut(s) 213, 449, 594
EcoRI GAATTC 1 cut(s) 411
EcoRII CCWGG 3 cut(s) 27, 180, 1123
EcoT14I CCWWGG 4 cut(s) 270, 913, 1098, 1145
EcoT22I ATGCAT 1 cut(s) 595
ErhI CCWWGG 4 cut(s) 270, 913, 1098, 1145
Esp3I CGTCTC 1 cut(s) 607
FaeI CATG 6 cut(s) 89, 712, 792, 857, 917, 1022
FaqI GGGAC 1 cut(s) 366
FatI CATG 6 cut(s) 85, 708, 788, 853, 913, 1018
Fnu4HI GCNGC 3 cut(s) 1262, 1290, 1293
FokI GGATG 3 cut(s) 278, 413, 930
Fsp4HI GCNGC 3 cut(s) 1262, 1290, 1293
FspBI CTAG 2 cut(s) 633, 1251
GlaI GCGC 1 cut(s) 1343
GluI GCNGC 3 cut(s) 1262, 1290, 1293
GsaI CCCAGC 1 cut(s) 399
GsuI CTGGAG 1 cut(s) 295
HaeIII GGCC 2 cut(s) 201, 1231
HapII CCGG 2 cut(s) 966, 1228
HgaI GACGC 1 cut(s) 1036
HhaI GCGC 1 cut(s) 1344
Hin1I GRCGYC 1 cut(s) 1047
Hin1II CATG 6 cut(s) 89, 712, 792, 857, 917, 1022
Hin6I GCGC 1 cut(s) 1342
HinP1I GCGC 1 cut(s) 1342
HinfI GANTC 6 cut(s) 308, 572, 938, 962, 1321, 1378
HpaII CCGG 2 cut(s) 966, 1228
HphI GGTGA 4 cut(s) 31, 196, 226, 259
Hpy166II GTNNAC 6 cut(s) 361, 406, 751, 979, 1024, 1206
Hpy188I TCNGA 9 cut(s) 114, 231, 468, 493, 577, 613, 818, 943, 1056
Hpy188III TCNNGA 5 cut(s) 86, 854, 904, 1065, 1280
Hpy8I GTNNAC 6 cut(s) 361, 406, 751, 979, 1024, 1206
Hpy99I CGWCG 1 cut(s) 1052
HpyAV CCTTC 4 cut(s) 125, 385, 1102, 1308
HpyCH4III ACNGT 3 cut(s) 497, 801, 1236
HpyCH4IV ACGT 2 cut(s) 428, 600
HpyCH4V TGCA 7 cut(s) 166, 439, 593, 1075, 1264, 1289, 1370
HpyF10VI GCNNNNNNNGC 4 cut(s) 142, 856, 1109, 1228
HpyF3I CTNAG 8 cut(s) 476, 576, 928, 1055, 1063, 1213, 1271, 1338
HpySE526I ACGT 2 cut(s) 428, 600
Hsp92I GRCGYC 1 cut(s) 1047
Hsp92II CATG 6 cut(s) 89, 712, 792, 857, 917, 1022
HspAI GCGC 1 cut(s) 1342
KpnI GGTACC 1 cut(s) 1098
Kzo9I GATC 5 cut(s) 109, 318, 468, 1067, 1402
LmnI GCTCC 1 cut(s) 183
Lsp1109I GCAGC 2 cut(s) 1248, 1301
LweI GCATC 4 cut(s) 154, 489, 859, 1181
MaeI CTAG 2 cut(s) 633, 1251
MaeII ACGT 2 cut(s) 428, 600
MalI GATC 5 cut(s) 111, 320, 470, 1069, 1404
MboI GATC 5 cut(s) 109, 318, 468, 1067, 1402
MfeI CAATTG 1 cut(s) 386
MhlI GDGCHC 2 cut(s) 138, 861
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 8 cut(s) 371, 386, 411, 520, 651, 667, 698, 734
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 3 cut(s) 302, 947, 956
Mox20I TGGCCA 1 cut(s) 201
Mph1103I ATGCAT 1 cut(s) 595
MroXI GAANNNNTTC 1 cut(s) 524
MscI TGGCCA 1 cut(s) 201
MseI TTAA 3 cut(s) 81, 597, 1332
MslI CAYNNNNRTG 2 cut(s) 90, 252
Msp20I TGGCCA 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 1292
MspI CCGG 2 cut(s) 966, 1228
MspR9I CCNGG 3 cut(s) 29, 182, 1125
MunI CAATTG 1 cut(s) 386
MvaI CCWGG 3 cut(s) 29, 182, 1125
MvnI CGCG 1 cut(s) 1344
MwoI GCNNNNNNNGC 4 cut(s) 142, 856, 1109, 1228
NcoI CCATGG 1 cut(s) 913
NdeII GATC 5 cut(s) 109, 318, 468, 1067, 1402
NlaIII CATG 6 cut(s) 89, 712, 792, 857, 917, 1022
NsiI ATGCAT 1 cut(s) 595
NspI RCATGY 1 cut(s) 1022
PagI TCATGA 2 cut(s) 85, 853
PciI ACATGT 1 cut(s) 1018
PdmI GAANNNNTTC 1 cut(s) 524
PfeI GAWTC 3 cut(s) 572, 1321, 1378
PkrI GCNGC 3 cut(s) 1263, 1291, 1294
PleI GAGTC 3 cut(s) 302, 946, 956
PpsI GAGTC 3 cut(s) 302, 946, 956
PscI ACATGT 1 cut(s) 1018
Psp6I CCWGG 3 cut(s) 27, 180, 1123
PspFI CCCAGC 1 cut(s) 395
PspGI CCWGG 3 cut(s) 27, 180, 1123
PspPI GGNCC 3 cut(s) 647, 693, 921
PstI CTGCAG 1 cut(s) 1077
RsaI GTAC 6 cut(s) 302, 360, 407, 511, 558, 1096
RsaNI GTAC 6 cut(s) 301, 359, 406, 510, 557, 1095
RseI CAYNNNNRTG 2 cut(s) 90, 252
SaqAI TTAA 3 cut(s) 81, 597, 1332
SatI GCNGC 3 cut(s) 1262, 1290, 1293
Sau3AI GATC 5 cut(s) 109, 318, 468, 1067, 1402
Sau96I GGNCC 3 cut(s) 647, 693, 921
SchI GAGTC 3 cut(s) 302, 947, 956
ScrFI CCNGG 3 cut(s) 29, 182, 1125
SduI GDGCHC 2 cut(s) 138, 861
SfaNI GCATC 4 cut(s) 154, 489, 859, 1181
SfcI CTRYAG 1 cut(s) 1073
SinI GGWCC 3 cut(s) 647, 693, 921
SmiMI CAYNNNNRTG 2 cut(s) 90, 252
SmlI CTYRAG 1 cut(s) 1190
SmoI CTYRAG 1 cut(s) 1190
Sse9I AATT 8 cut(s) 371, 386, 411, 520, 651, 667, 698, 734
SsiI CCGC 1 cut(s) 1292
SspMI CTAG 2 cut(s) 633, 1251
StyD4I CCNGG 3 cut(s) 27, 180, 1123
StyI CCWWGG 4 cut(s) 270, 913, 1098, 1145
TaaI ACNGT 3 cut(s) 497, 801, 1236
TaiI ACGT 2 cut(s) 431, 603
TaqI TCGA 3 cut(s) 306, 483, 570
TasI AATT 8 cut(s) 371, 386, 411, 520, 651, 667, 698, 734
TatI WGTACW 2 cut(s) 405, 556
TauI GCSGC 1 cut(s) 1295
TfiI GAWTC 3 cut(s) 572, 1321, 1378
Tru1I TTAA 3 cut(s) 81, 597, 1332
Tru9I TTAA 3 cut(s) 81, 597, 1332
TscAI CASTG 1 cut(s) 1077
TseI GCWGC 2 cut(s) 1261, 1289
TspDTI ATGAA 6 cut(s) 102, 108, 280, 517, 725, 1121
TspGWI ACGGA 1 cut(s) 799
TspRI CASTG 1 cut(s) 1077
VpaK11BI GGWCC 3 cut(s) 647, 693, 921
XapI RAATTY 3 cut(s) 411, 520, 698
XceI RCATGY 1 cut(s) 1022
XmnI GAANNNNTTC 1 cut(s) 524
XspI CTAG 2 cut(s) 633, 1251
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.