Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004793

Physical Location & Seq

Genomic Coordinates Reverse (-)

38194786 .. 38195848

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g38410.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGAGAGGAAACAGAACAATTTAGTGGAGAAAGATCCTCATGCCCACGCTAACAAATCAGAGACTGATACACCCTCTAGTTTCAATGAAGGACAAGGATTTGGCGTGAGAAAAAAACACCGTTGCTTTGTGGTAACCGCACGAGCACGTTCTTTTCTATACCACCAGGTTAGACTGCTTGTTGGTGTACTCAAGTGCATCGGCACCGGAGATTTAAAAGTACCTGATGTCGAGAGGATCTTGAATGCAAAGACGGTGACTGCTGCTAGTCCCATGGCACCTGCCTGTGGTCTGTACCTTGGACAAGTGAAGTACGATTTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

109

Amino Acids

11.94

Weight (kDa)

9.47

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09800 AT1G09800
fragaria_vesca	FvH4_3g33250
malus_domestica	MD08G1241400.v1.1 MD15G1435400.v1.1
prunus_persica	Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1
pyrus_communis	pycom08g20930 pycom15g38410
rosa_chinensis	RchiOBHm_Chr3g0481081 RchiOBHm_Chr5g0060601
rosa_laevigata	RLG00000035374
rosa_multiflora	Rmu_sc0001650.1_g000001 Rmu_sc0020761.1_g000005
rosa_roxburghii	Rroxscaffold_1G00020210 Rroxscaffold_7G00212020
rosa_rugosa	Rorug05G0331000
rosa_samantha	Rh3AG240400 Rh5AG395500 Rh5BG407800 Rh5CG432300 Rh5DG422700
rosa_wichuraiana	Rw5G037210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	289
Acc36I	ACCTGC	1 cut(s)	289
AccB1I	GGYRCC	2 cut(s)	203, 277
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	2 cut(s)	29, 245
AfaI	GTAC	4 cut(s)	189, 222, 296, 314
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	85, 244
AjnI	CCWGG	1 cut(s)	165
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	2 cut(s)	29, 245
AlwNI	CAGNNNCTG	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	268
BanI	GGYRCC	2 cut(s)	203, 277
BauI	CACGAG	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	2 cut(s)	78, 267
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	167
BmiI	GGNNCC	2 cut(s)	205, 279
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	273, 298
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	273, 298
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	250
BshNI	GGYRCC	2 cut(s)	203, 277
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	255
BsmI	GAATGC	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	34, 237
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	1 cut(s)	138
BspLI	GGNNCC	2 cut(s)	205, 279
BspMI	ACCTGC	1 cut(s)	289
BspPI	GGATC	2 cut(s)	29, 245
BspT107I	GGYRCC	2 cut(s)	203, 277
BssECI	CCNNGG	2 cut(s)	273, 298
BssMI	GATC	2 cut(s)	34, 237
BssSI	CACGAG	1 cut(s)	141
BssT1I	CCWWGG	2 cut(s)	273, 298
Bst2BI	CACGAG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	122, 256
BstDSI	CCRYGG	1 cut(s)	273
BstEII	GGTNACC	1 cut(s)	133
BstKTI	GATC	2 cut(s)	37, 240
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	2 cut(s)	34, 237
BstNI	CCWGG	1 cut(s)	167
BstPI	GGTNACC	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	250
BstX2I	RGATCY	2 cut(s)	34, 237
BstYI	RGATCY	2 cut(s)	34, 237
BtgI	CCRYGG	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	289
CaiI	CAGNNNCTG	1 cut(s)	65
CsiI	ACCWGGT	1 cut(s)	165
Csp6I	GTAC	4 cut(s)	188, 221, 295, 313
CviAII	CATG	3 cut(s)	41, 274, 324
CviQI	GTAC	4 cut(s)	188, 221, 295, 313
DpnI	GATC	2 cut(s)	36, 239
DpnII	GATC	2 cut(s)	34, 237
DraI	TTTAAA	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	273, 298
Eco91I	GGTNACC	1 cut(s)	133
EcoO65I	GGTNACC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	2 cut(s)	273, 298
ErhI	CCWWGG	2 cut(s)	273, 298
FaeI	CATG	3 cut(s)	44, 277, 327
FaiI	YATR	4 cut(s)	42, 160, 275, 325
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	3 cut(s)	40, 273, 323
Fnu4HI	GCNGC	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	2 cut(s)	78, 267
GluI	GCNGC	1 cut(s)	264
HapII	CCGG	1 cut(s)	207
Hin1II	CATG	3 cut(s)	44, 277, 327
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	232, 241
Hpy8I	GTNNAC	1 cut(s)	188
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	2 cut(s)	122, 256
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	2 cut(s)	198, 248
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	3 cut(s)	44, 277, 327
Kzo9I	GATC	2 cut(s)	34, 237
LpnPI	CCDG	6 cut(s)	152, 179, 220, 237, 294, 298
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	1 cut(s)	207
MabI	ACCWGGT	1 cut(s)	165
MaeI	CTAG	2 cut(s)	78, 267
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	2 cut(s)	133, 256
MalI	GATC	2 cut(s)	36, 239
MboI	GATC	2 cut(s)	34, 237
MflI	RGATCY	2 cut(s)	34, 237
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	1 cut(s)	19
MnlI	CCTC	3 cut(s)	48, 85, 228
MseI	TTAA	1 cut(s)	215
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	167
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	2 cut(s)	34, 237
NlaIII	CATG	3 cut(s)	44, 277, 327
NlaIV	GGNNCC	2 cut(s)	205, 279
NmuCI	GTSAC	1 cut(s)	256
PaqCI	CACCTGC	1 cut(s)	289
PctI	GAATGC	1 cut(s)	250
PkrI	GCNGC	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	165
PspEI	GGTNACC	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	205, 279
PstNI	CAGNNNCTG	1 cut(s)	65
PsuI	RGATCY	2 cut(s)	34, 237
RsaI	GTAC	4 cut(s)	189, 222, 296, 314
RsaNI	GTAC	4 cut(s)	188, 221, 295, 313
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	2 cut(s)	34, 237
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	5 cut(s)	151, 171, 226, 283, 300
SexAI	ACCWGGT	1 cut(s)	165
SfaNI	GCATC	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	2 cut(s)	78, 267
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	2 cut(s)	273, 298
TaaI	ACNGT	2 cut(s)	122, 256
TaiI	ACGT	1 cut(s)	151
TaqI	TCGA	1 cut(s)	231
TasI	AATT	1 cut(s)	19
TatI	WGTACW	1 cut(s)	187
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	102
XspI	CTAG	2 cut(s)	78, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.