Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020761.1

Orthogroup ID

OG0004793

Physical Location & Seq

Genomic Coordinates Forward (+)

10762 .. 13041

Gene Structure 2280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020761.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgtcggaaaatctgaagcactcactagagagttgctcccaatcgcccgaaaggtcttcaaagatttcgaaaaccagcgaggagcaagaagcagaaccgatgagccaaccctccggaagacaacgctatctgatcgcaatagagtacattggtactcgcttctctggctctcagcagcagtccaattgccgcactgtggttggcgttcttgaggaggcttttcgtaaatttattgggcagccggtttcaatcttctgctcaagtcgaactgatgcaggagtccatgccttatccaatgtttgtcatgtagatattgaacgcataagcaaaagaaagcctggtgaagtgttaccacctcatgaatctacagtggtccaaaaagctgtaaaccatttcttacagaagaatgaaggtgatgtaatggtggtggatgtacgaaaagttccggctgattttcatgctagatttaaagcccaagaacgcacgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

162

Amino Acids

18.16

Weight (kDa)

8.38

Isoelectric Point (pI)

65.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09800 AT1G09800
fragaria_vesca	FvH4_3g33250
malus_domestica	MD08G1241400.v1.1 MD15G1435400.v1.1
prunus_persica	Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1
pyrus_communis	pycom08g20930 pycom15g38410
rosa_chinensis	RchiOBHm_Chr3g0481081 RchiOBHm_Chr5g0060601
rosa_laevigata	RLG00000035374
rosa_multiflora	Rmu_sc0001650.1_g000001 Rmu_sc0020761.1_g000005
rosa_roxburghii	Rroxscaffold_1G00020210 Rroxscaffold_7G00212020
rosa_rugosa	Rorug05G0331000
rosa_samantha	Rh3AG240400 Rh5AG395500 Rh5BG407800 Rh5CG432300 Rh5DG422700
rosa_wichuraiana	Rw5G037210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	113
AciI	CCGC	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	35
AfaI	GTAC	3 cut(s)	146, 154, 435
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	3 cut(s)	60, 249, 317
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	1 cut(s)	383
AluI	AGCT	1 cut(s)	383
Aor13HI	TCCGGA	1 cut(s)	113
ApeKI	GCWGC	2 cut(s)	175, 238
ApoI	RAATTY	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	2 cut(s)	353, 425
AsuII	TTCGAA	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	373
BbsI	GAAGAC	2 cut(s)	48, 124
BbvI	GCAGC	2 cut(s)	187, 250
BciT130I	CCWGG	1 cut(s)	339
BfaI	CTAG	2 cut(s)	26, 462
BfmI	CTRYAG	1 cut(s)	366
BisI	GCNGC	3 cut(s)	176, 190, 239
BlsI	GCNGC	3 cut(s)	177, 191, 240
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	262
BpiI	GAAGAC	2 cut(s)	48, 124
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
Bpu14I	TTCGAA	1 cut(s)	68
BpuEI	CTTGAG	2 cut(s)	230, 244
BsaAI	YACGTR	1 cut(s)	486
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse118I	RCCGGY	1 cut(s)	241
BseAI	TCCGGA	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	339
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	185
BseRI	GAGGAG	2 cut(s)	95, 227
BseXI	GCAGC	2 cut(s)	187, 250
BsiSI	CCGG	3 cut(s)	114, 242, 446
BslI	CCNNNNNNNGG	1 cut(s)	196
Bsp119I	TTCGAA	1 cut(s)	68
Bsp13I	TCCGGA	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	132
BspACI	CCGC	1 cut(s)	190
BspCNI	CTCAG	1 cut(s)	184
BspEI	TCCGGA	1 cut(s)	113
BspHI	TCATGA	1 cut(s)	358
BspT104I	TTCGAA	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	241
BssMI	GATC	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	196, 370
BstBAI	YACGTR	1 cut(s)	486
BstBI	TTCGAA	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	436
BstKTI	GATC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	2 cut(s)	187, 250
BstV2I	GAAGAC	2 cut(s)	48, 124
BtsCI	GGATG	1 cut(s)	436
BtsIMutI	CAGTG	2 cut(s)	192, 375
CciI	TCATGA	1 cut(s)	358
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	373
Csp6I	GTAC	3 cut(s)	145, 153, 434
CviAII	CATG	4 cut(s)	284, 305, 359, 458
CviJI	RGCY	8 cut(s)	105, 168, 218, 241, 337, 383, 449, 473
CviKI_1	RGCY	8 cut(s)	105, 168, 218, 241, 337, 383, 449, 473
CviQI	GTAC	3 cut(s)	145, 153, 434
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
DraI	TTTAAA	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	337
FaeI	CATG	4 cut(s)	287, 308, 362, 461
FaiI	YATR	5 cut(s)	285, 306, 323, 360, 459
FatI	CATG	4 cut(s)	283, 304, 358, 457
Fnu4HI	GCNGC	3 cut(s)	176, 190, 239
FokI	GGATG	1 cut(s)	443
Fsp4HI	GCNGC	3 cut(s)	176, 190, 239
FspBI	CTAG	2 cut(s)	26, 462
GluI	GCNGC	3 cut(s)	176, 190, 239
HapII	CCGG	3 cut(s)	114, 242, 446
Hin1II	CATG	4 cut(s)	287, 308, 362, 461
HinfI	GANTC	2 cut(s)	279, 362
HpaII	CCGG	3 cut(s)	114, 242, 446
HphI	GGTGA	2 cut(s)	353, 425
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	3 cut(s)	7, 15, 132
Hpy188III	TCNNGA	3 cut(s)	114, 209, 359
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	2 cut(s)	196, 370
HpyCH4IV	ACGT	1 cut(s)	485
HpyCH4V	TGCA	1 cut(s)	275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	485
Hsp92II	CATG	4 cut(s)	287, 308, 362, 461
Kpn2I	TCCGGA	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	2 cut(s)	41, 82
LpnPI	CCDG	8 cut(s)	88, 127, 150, 255, 261, 324, 351, 459
Lsp1109I	GCAGC	2 cut(s)	187, 250
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	2 cut(s)	26, 462
MaeII	ACGT	1 cut(s)	485
MaeIII	GTNAC	1 cut(s)	348
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	4 cut(s)	48, 129, 244, 415
MfeI	CAATTG	1 cut(s)	184
MluCI	AATT	2 cut(s)	184, 227
MlyI	GAGTC	1 cut(s)	288
MnlI	CCTC	5 cut(s)	73, 121, 205, 208, 366
MroI	TCCGGA	1 cut(s)	113
MseI	TTAA	1 cut(s)	468
MspI	CCGG	3 cut(s)	114, 242, 446
MspR9I	CCNGG	1 cut(s)	339
MunI	CAATTG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	165
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	4 cut(s)	287, 308, 362, 461
NspV	TTCGAA	1 cut(s)	68
PagI	TCATGA	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	3 cut(s)	177, 191, 240
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
Ppu21I	YACGTR	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspPI	GGNCC	1 cut(s)	373
PsrI	GAACNNNNNNTAC	2 cut(s)	426, 458
RsaI	GTAC	3 cut(s)	146, 154, 435
RsaNI	GTAC	3 cut(s)	145, 153, 434
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	3 cut(s)	176, 190, 239
Sau3AI	GATC	1 cut(s)	132
Sau96I	GGNCC	1 cut(s)	373
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	1 cut(s)	339
SetI	ASST	5 cut(s)	56, 358, 385, 415, 488
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	366
SfuI	TTCGAA	1 cut(s)	68
SinI	GGWCC	1 cut(s)	373
SmlI	CTYRAG	2 cut(s)	209, 259
SmoI	CTYRAG	2 cut(s)	209, 259
Sse9I	AATT	2 cut(s)	184, 227
SsiI	CCGC	1 cut(s)	190
SspMI	CTAG	2 cut(s)	26, 462
StyD4I	CCNGG	1 cut(s)	337
TaaI	ACNGT	2 cut(s)	196, 370
TaiI	ACGT	1 cut(s)	488
TaqI	TCGA	2 cut(s)	68, 265
TasI	AATT	2 cut(s)	184, 227
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	2 cut(s)	199, 375
TseI	GCWGC	2 cut(s)	175, 238
TspDTI	ATGAA	3 cut(s)	375, 423, 446
TspRI	CASTG	2 cut(s)	199, 375
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	1 cut(s)	227
XspI	CTAG	2 cut(s)	26, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.