tRNA pseudouridine
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G09800 AT1G09800 |
| fragaria_vesca | FvH4_3g33250 |
| malus_domestica | MD08G1241400.v1.1 MD15G1435400.v1.1 |
| prunus_persica | Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 Prupe.1G579000_v2.0.a1 |
| pyrus_communis | pycom08g20930 pycom15g38410 |
| rosa_chinensis | RchiOBHm_Chr3g0481081 RchiOBHm_Chr5g0060601 |
| rosa_laevigata | RLG00000035374 |
| rosa_multiflora | Rmu_sc0001650.1_g000001 Rmu_sc0020761.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00020210 Rroxscaffold_7G00212020 |
| rosa_rugosa | Rorug05G0331000 |
| rosa_samantha | Rh3AG240400 Rh5AG395500 Rh5BG407800 Rh5CG432300 Rh5DG422700 |
| rosa_wichuraiana | Rw5G037210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 186 |
| AjnI | CCWGG | 1 cut(s) | 88 |
| AluBI | AGCT | 2 cut(s) | 134, 200 |
| AluI | AGCT | 2 cut(s) | 134, 200 |
| AspS9I | GGNCC | 1 cut(s) | 124 |
| AsuHPI | GGTGA | 2 cut(s) | 104, 176 |
| AvaII | GGWCC | 1 cut(s) | 124 |
| BciT130I | CCWGG | 1 cut(s) | 90 |
| BfaI | CTAG | 1 cut(s) | 213 |
| BfmI | CTRYAG | 1 cut(s) | 117 |
| Bme1390I | CCNGG | 1 cut(s) | 90 |
| Bme18I | GGWCC | 1 cut(s) | 124 |
| BmgT120I | GGNCC | 1 cut(s) | 124 |
| BmrFI | CCNGG | 1 cut(s) | 90 |
| BmsI | GCATC | 1 cut(s) | 13 |
| BsaAI | YACGTR | 1 cut(s) | 237 |
| BseBI | CCWGG | 1 cut(s) | 90 |
| BseGI | GGATG | 1 cut(s) | 187 |
| BspHI | TCATGA | 1 cut(s) | 109 |
| Bst2UI | CCWGG | 1 cut(s) | 90 |
| Bst4CI | ACNGT | 1 cut(s) | 121 |
| BstBAI | YACGTR | 1 cut(s) | 237 |
| BstF5I | GGATG | 1 cut(s) | 187 |
| BstNI | CCWGG | 1 cut(s) | 90 |
| BstSCI | CCNGG | 1 cut(s) | 88 |
| BstSFI | CTRYAG | 1 cut(s) | 117 |
| BtsCI | GGATG | 1 cut(s) | 187 |
| BtsIMutI | CAGTG | 1 cut(s) | 126 |
| CciI | TCATGA | 1 cut(s) | 109 |
| Cfr13I | GGNCC | 1 cut(s) | 124 |
| Csp6I | GTAC | 1 cut(s) | 185 |
| CviAII | CATG | 4 cut(s) | 35, 56, 110, 209 |
| CviJI | RGCY | 4 cut(s) | 88, 134, 200, 224 |
| CviKI_1 | RGCY | 4 cut(s) | 88, 134, 200, 224 |
| CviQI | GTAC | 1 cut(s) | 185 |
| DraI | TTTAAA | 1 cut(s) | 220 |
| Eco47I | GGWCC | 1 cut(s) | 124 |
| EcoRII | CCWGG | 1 cut(s) | 88 |
| FaeI | CATG | 4 cut(s) | 38, 59, 113, 212 |
| FaiI | YATR | 5 cut(s) | 36, 57, 74, 111, 210 |
| FatI | CATG | 4 cut(s) | 34, 55, 109, 208 |
| FokI | GGATG | 1 cut(s) | 194 |
| FspBI | CTAG | 1 cut(s) | 213 |
| Hin1II | CATG | 4 cut(s) | 38, 59, 113, 212 |
| HinfI | GANTC | 1 cut(s) | 30 |
| HphI | GGTGA | 2 cut(s) | 104, 176 |
| Hpy166II | GTNNAC | 1 cut(s) | 139 |
| Hpy188III | TCNNGA | 1 cut(s) | 110 |
| Hpy8I | GTNNAC | 1 cut(s) | 139 |
| HpyAV | CCTTC | 1 cut(s) | 155 |
| HpyCH4III | ACNGT | 1 cut(s) | 121 |
| HpyCH4IV | ACGT | 1 cut(s) | 236 |
| HpyCH4V | TGCA | 1 cut(s) | 26 |
| HpySE526I | ACGT | 1 cut(s) | 236 |
| Hsp92II | CATG | 4 cut(s) | 38, 59, 113, 212 |
| LpnPI | CCDG | 4 cut(s) | 12, 75, 102, 210 |
| LweI | GCATC | 1 cut(s) | 13 |
| MaeI | CTAG | 1 cut(s) | 213 |
| MaeII | ACGT | 1 cut(s) | 236 |
| MaeIII | GTNAC | 1 cut(s) | 99 |
| MboII | GAAGA | 1 cut(s) | 166 |
| MlyI | GAGTC | 1 cut(s) | 39 |
| MnlI | CCTC | 1 cut(s) | 117 |
| MseI | TTAA | 1 cut(s) | 219 |
| MspA1I | CMGCKG | 1 cut(s) | 200 |
| MspR9I | CCNGG | 1 cut(s) | 90 |
| MvaI | CCWGG | 1 cut(s) | 90 |
| NlaIII | CATG | 4 cut(s) | 38, 59, 113, 212 |
| PagI | TCATGA | 1 cut(s) | 109 |
| PleI | GAGTC | 1 cut(s) | 38 |
| PpsI | GAGTC | 1 cut(s) | 38 |
| Ppu21I | YACGTR | 1 cut(s) | 237 |
| Psp6I | CCWGG | 1 cut(s) | 88 |
| PspGI | CCWGG | 1 cut(s) | 88 |
| PspPI | GGNCC | 1 cut(s) | 124 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 177, 209 |
| PvuII | CAGCTG | 1 cut(s) | 200 |
| RsaI | GTAC | 1 cut(s) | 186 |
| RsaNI | GTAC | 1 cut(s) | 185 |
| SaqAI | TTAA | 1 cut(s) | 219 |
| Sau96I | GGNCC | 1 cut(s) | 124 |
| SchI | GAGTC | 1 cut(s) | 39 |
| ScrFI | CCNGG | 1 cut(s) | 90 |
| SetI | ASST | 6 cut(s) | 109, 118, 136, 166, 202, 239 |
| SfaNI | GCATC | 1 cut(s) | 13 |
| SfcI | CTRYAG | 1 cut(s) | 117 |
| SinI | GGWCC | 1 cut(s) | 124 |
| SmlI | CTYRAG | 1 cut(s) | 10 |
| SmoI | CTYRAG | 1 cut(s) | 10 |
| SspMI | CTAG | 1 cut(s) | 213 |
| StyD4I | CCNGG | 1 cut(s) | 88 |
| TaaI | ACNGT | 1 cut(s) | 121 |
| TaiI | ACGT | 1 cut(s) | 239 |
| TaqI | TCGA | 1 cut(s) | 16 |
| Tru1I | TTAA | 1 cut(s) | 219 |
| Tru9I | TTAA | 1 cut(s) | 219 |
| TscAI | CASTG | 1 cut(s) | 126 |
| TspDTI | ATGAA | 3 cut(s) | 126, 174, 197 |
| TspRI | CASTG | 1 cut(s) | 126 |
| VpaK11BI | GGWCC | 1 cut(s) | 124 |
| XspI | CTAG | 1 cut(s) | 213 |