MACPF domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G24290 AT4G24290 |
| fragaria_vesca | FvH4_5g28650 |
| malus_domestica | MD08G1242200.v1.1 MD15G1435900.v1.1 |
| prunus_persica | Prupe.1G579600_v2.0.a1 Prupe.1G579600_v2.0.a1 Prupe.1G579600_v2.0.a1 Prupe.1G579600_v2.0.a1 Prupe.1G579600_v2.0.a1 Prupe.1G579600_v2.0.a1 |
| pyrus_communis | pycom08g21000 pycom15g38470 |
| rosa_chinensis | RchiOBHm_Chr7g0220651 |
| rosa_laevigata | RLG00000002212 |
| rosa_multiflora | Rmu_ssc0000189.1_g000013 |
| rosa_roxburghii | Rroxscaffold_3G00239260 |
| rosa_rugosa | Rorug07G0195500 Rorug07G0195600 Rorug07G0195700 |
| rosa_samantha | Rh7AG336700 Rh7BG327600 Rh7CG354500 Rh7DG333000 |
| rosa_wichuraiana | Rw7G028710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 493 |
| AccB1I | GGYRCC | 1 cut(s) | 1042 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 944, 1175 |
| AccII | CGCG | 1 cut(s) | 1591 |
| AciI | CCGC | 4 cut(s) | 1078, 1183, 1589, 1591 |
| AclI | AACGTT | 1 cut(s) | 453 |
| AclWI | GGATC | 3 cut(s) | 1268, 1389, 1516 |
| AcoI | YGGCCR | 2 cut(s) | 1218, 1592 |
| AcsI | RAATTY | 5 cut(s) | 285, 335, 1019, 1612, 1670 |
| AcuI | CTGAAG | 1 cut(s) | 217 |
| AdeI | CACNNNGTG | 1 cut(s) | 1775 |
| AfaI | GTAC | 4 cut(s) | 95, 113, 441, 1190 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 944, 1175, 1411 |
| AflII | CTTAAG | 1 cut(s) | 8 |
| AhlI | ACTAGT | 1 cut(s) | 758 |
| AjnI | CCWGG | 6 cut(s) | 166, 279, 937, 1513, 1627, 1714 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1050, 1082 |
| AluBI | AGCT | 8 cut(s) | 20, 29, 365, 1003, 1027, 1113, 1655, 1663 |
| AluI | AGCT | 8 cut(s) | 20, 29, 365, 1003, 1027, 1113, 1655, 1663 |
| Alw21I | GWGCWC | 1 cut(s) | 1005 |
| Alw26I | GTCTC | 4 cut(s) | 503, 1444, 1703, 1735 |
| AlwI | GGATC | 3 cut(s) | 1268, 1389, 1516 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1175 |
| AoxI | GGCC | 5 cut(s) | 1121, 1166, 1218, 1592, 1700 |
| ApeKI | GCWGC | 6 cut(s) | 29, 362, 488, 574, 577, 1027 |
| ApoI | RAATTY | 5 cut(s) | 285, 335, 1019, 1612, 1670 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1340 |
| AspLEI | GCGC | 4 cut(s) | 7, 225, 747, 1363 |
| AspS9I | GGNCC | 5 cut(s) | 237, 1070, 1121, 1634, 1700 |
| AsuHPI | GGTGA | 1 cut(s) | 1503 |
| AvaII | GGWCC | 3 cut(s) | 237, 1070, 1634 |
| AxyI | CCTNAGG | 1 cut(s) | 310 |
| BaeGI | GKGCMC | 1 cut(s) | 1045 |
| BalI | TGGCCA | 1 cut(s) | 1220 |
| BanI | GGYRCC | 1 cut(s) | 1042 |
| BanII | GRGCYC | 2 cut(s) | 1005, 1405 |
| Bbv12I | GWGCWC | 1 cut(s) | 1005 |
| BbvI | GCAGC | 6 cut(s) | 16, 374, 475, 586, 589, 1014 |
| BciT130I | CCWGG | 6 cut(s) | 168, 281, 939, 1515, 1629, 1716 |
| BcoDI | GTCTC | 4 cut(s) | 503, 1444, 1703, 1735 |
| BcuI | ACTAGT | 1 cut(s) | 758 |
| BfaI | CTAG | 3 cut(s) | 759, 1193, 1745 |
| BfmI | CTRYAG | 2 cut(s) | 1103, 1479 |
| BfoI | RGCGCY | 1 cut(s) | 8 |
| BfrI | CTTAAG | 1 cut(s) | 8 |
| BfuAI | ACCTGC | 1 cut(s) | 493 |
| BisI | GCNGC | 8 cut(s) | 30, 363, 489, 575, 578, 1028, 1184, 1592 |
| BlsI | GCNGC | 8 cut(s) | 31, 364, 490, 576, 579, 1029, 1185, 1593 |
| BmcAI | AGTACT | 1 cut(s) | 95 |
| Bme1390I | CCNGG | 6 cut(s) | 168, 281, 939, 1515, 1629, 1716 |
| Bme18I | GGWCC | 3 cut(s) | 237, 1070, 1634 |
| BmgT120I | GGNCC | 5 cut(s) | 237, 1070, 1121, 1634, 1700 |
| BmiI | GGNNCC | 8 cut(s) | 15, 483, 520, 1044, 1122, 1402, 1635, 1644 |
| BmrFI | CCNGG | 6 cut(s) | 168, 281, 939, 1515, 1629, 1716 |
| BmrI | ACTGGG | 1 cut(s) | 1399 |
| BmsI | GCATC | 6 cut(s) | 56, 349, 640, 722, 1106, 1501 |
| BmuI | ACTGGG | 1 cut(s) | 1399 |
| BpmI | CTGGAG | 2 cut(s) | 1419, 1698 |
| BpuEI | CTTGAG | 3 cut(s) | 74, 973, 1468 |
| Bsa29I | ATCGAT | 2 cut(s) | 78, 135 |
| BsaBI | GATNNNNATC | 3 cut(s) | 131, 179, 1380 |
| BsaJI | CCNNGG | 5 cut(s) | 938, 1031, 1589, 1627, 1628 |
| BsaWI | WCCGGW | 2 cut(s) | 1455, 1639 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 725, 755 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 944, 1175, 1411 |
| Bse1I | ACTGG | 8 cut(s) | 301, 426, 1046, 1143, 1169, 1180, 1402, 1405 |
| Bse21I | CCTNAGG | 1 cut(s) | 310 |
| Bse3DI | GCAATG | 1 cut(s) | 1099 |
| Bse8I | GATNNNNATC | 3 cut(s) | 131, 179, 1380 |
| BseBI | CCWGG | 6 cut(s) | 168, 281, 939, 1515, 1629, 1716 |
| BseCI | ATCGAT | 2 cut(s) | 78, 135 |
| BseDI | CCNNGG | 5 cut(s) | 938, 1031, 1589, 1627, 1628 |
| BseGI | GGATG | 6 cut(s) | 562, 802, 1221, 1492, 1510, 1647 |
| BseJI | GATNNNNATC | 3 cut(s) | 131, 179, 1380 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 944, 1175, 1411 |
| BseMI | GCAATG | 1 cut(s) | 1099 |
| BseMII | CTCAG | 4 cut(s) | 24, 324, 354, 446 |
| BseNI | ACTGG | 8 cut(s) | 301, 426, 1046, 1143, 1169, 1180, 1402, 1405 |
| BseRI | GAGGAG | 1 cut(s) | 832 |
| BseSI | GKGCMC | 1 cut(s) | 1045 |
| BseXI | GCAGC | 6 cut(s) | 16, 374, 475, 586, 589, 1014 |
| BsgI | GTGCAG | 1 cut(s) | 1339 |
| Bsh1236I | CGCG | 1 cut(s) | 1591 |
| BshFI | GGCC | 5 cut(s) | 1123, 1168, 1220, 1594, 1702 |
| BshNI | GGYRCC | 1 cut(s) | 1042 |
| BshVI | ATCGAT | 2 cut(s) | 78, 135 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1005 |
| BsiSI | CCGG | 2 cut(s) | 1456, 1640 |
| BslFI | GGGAC | 1 cut(s) | 452 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 944, 1175, 1411 |
| BsmAI | GTCTC | 4 cut(s) | 503, 1444, 1703, 1735 |
| BsmFI | GGGAC | 1 cut(s) | 452 |
| BsmI | GAATGC | 1 cut(s) | 580 |
| BsnI | GGCC | 5 cut(s) | 1123, 1168, 1220, 1594, 1702 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1005, 1045, 1405 |
| Bsp143I | GATC | 4 cut(s) | 1273, 1306, 1381, 1508 |
| BspACI | CCGC | 4 cut(s) | 1078, 1183, 1589, 1591 |
| BspANI | GGCC | 5 cut(s) | 1123, 1168, 1220, 1594, 1702 |
| BspCNI | CTCAG | 4 cut(s) | 25, 323, 353, 445 |
| BspDI | ATCGAT | 2 cut(s) | 78, 135 |
| BspFNI | CGCG | 1 cut(s) | 1591 |
| BspLI | GGNNCC | 8 cut(s) | 15, 483, 520, 1044, 1122, 1402, 1635, 1644 |
| BspMI | ACCTGC | 1 cut(s) | 493 |
| BspPI | GGATC | 3 cut(s) | 1268, 1389, 1516 |
| BspQI | GCTCTTC | 1 cut(s) | 993 |
| BspT107I | GGYRCC | 1 cut(s) | 1042 |
| BspTI | CTTAAG | 1 cut(s) | 8 |
| BsrDI | GCAATG | 1 cut(s) | 1099 |
| BsrI | ACTGG | 8 cut(s) | 301, 426, 1046, 1143, 1169, 1180, 1402, 1405 |
| BssECI | CCNNGG | 5 cut(s) | 938, 1031, 1589, 1627, 1628 |
| BssMI | GATC | 4 cut(s) | 1273, 1306, 1381, 1508 |
| BssT1I | CCWWGG | 1 cut(s) | 1031 |
| Bst2UI | CCWGG | 6 cut(s) | 168, 281, 939, 1515, 1629, 1716 |
| Bst4CI | ACNGT | 8 cut(s) | 415, 871, 1107, 1214, 1468, 1483, 1573, 1798 |
| Bst6I | CTCTTC | 5 cut(s) | 597, 993, 1251, 1448, 1809 |
| BstAFI | CTTAAG | 1 cut(s) | 8 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 742 |
| BstC8I | GCNNGC | 1 cut(s) | 1596 |
| BstDEI | CTNAG | 5 cut(s) | 33, 310, 340, 372, 432 |
| BstDSI | CCRYGG | 1 cut(s) | 1589 |
| BstF5I | GGATG | 6 cut(s) | 562, 802, 1221, 1492, 1510, 1647 |
| BstFNI | CGCG | 1 cut(s) | 1591 |
| BstH2I | RGCGCY | 1 cut(s) | 8 |
| BstHHI | GCGC | 4 cut(s) | 7, 225, 747, 1363 |
| BstKTI | GATC | 4 cut(s) | 1276, 1309, 1384, 1511 |
| BstMAI | GTCTC | 4 cut(s) | 503, 1444, 1703, 1735 |
| BstMBI | GATC | 4 cut(s) | 1273, 1306, 1381, 1508 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 26, 38, 494, 742, 1033, 1206, 1588 |
| BstNI | CCWGG | 6 cut(s) | 168, 281, 939, 1515, 1629, 1716 |
| BstSCI | CCNGG | 6 cut(s) | 166, 279, 937, 1513, 1627, 1714 |
| BstSFI | CTRYAG | 2 cut(s) | 1103, 1479 |
| BstSLI | GKGCMC | 1 cut(s) | 1045 |
| BstUI | CGCG | 1 cut(s) | 1591 |
| BstV1I | GCAGC | 6 cut(s) | 16, 374, 475, 586, 589, 1014 |
| BstX2I | RGATCY | 1 cut(s) | 1381 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 477, 1038, 1722 |
| BstYI | RGATCY | 1 cut(s) | 1381 |
| Bsu15I | ATCGAT | 2 cut(s) | 78, 135 |
| Bsu36I | CCTNAGG | 1 cut(s) | 310 |
| BsuRI | GGCC | 5 cut(s) | 1123, 1168, 1220, 1594, 1702 |
| BsuTUI | ATCGAT | 2 cut(s) | 78, 135 |
| BtgI | CCRYGG | 1 cut(s) | 1589 |
| BtgZI | GCGATG | 1 cut(s) | 911 |
| BtsCI | GGATG | 6 cut(s) | 562, 802, 1221, 1492, 1510, 1647 |
| BtsI | GCAGTG | 2 cut(s) | 1043, 1356 |
| BtsIMutI | CAGTG | 4 cut(s) | 419, 1043, 1176, 1356 |
| BveI | ACCTGC | 1 cut(s) | 493 |
| Cac8I | GCNNGC | 1 cut(s) | 1596 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1175 |
| CfoI | GCGC | 4 cut(s) | 7, 225, 747, 1363 |
| Cfr13I | GGNCC | 5 cut(s) | 237, 1070, 1121, 1634, 1700 |
| Cfr42I | CCGCGG | 1 cut(s) | 1592 |
| ClaI | ATCGAT | 2 cut(s) | 78, 135 |
| CsiI | ACCWGGT | 1 cut(s) | 1513 |
| Csp6I | GTAC | 4 cut(s) | 94, 112, 440, 1189 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1728, 1763 |
| CviAII | CATG | 4 cut(s) | 59, 477, 959, 1349 |
| CviQI | GTAC | 4 cut(s) | 94, 112, 440, 1189 |
| DdeI | CTNAG | 5 cut(s) | 33, 310, 340, 372, 432 |
| DpnI | GATC | 4 cut(s) | 1275, 1308, 1383, 1510 |
| DpnII | GATC | 4 cut(s) | 1273, 1306, 1381, 1508 |
| DraIII | CACNNNGTG | 1 cut(s) | 1775 |
| EaeI | YGGCCR | 2 cut(s) | 1218, 1592 |
| Eam1104I | CTCTTC | 5 cut(s) | 597, 993, 1251, 1448, 1809 |
| EarI | CTCTTC | 5 cut(s) | 597, 993, 1251, 1448, 1809 |
| Ecl136II | GAGCTC | 1 cut(s) | 1003 |
| Eco130I | CCWWGG | 1 cut(s) | 1031 |
| Eco24I | GRGCYC | 2 cut(s) | 1005, 1405 |
| Eco47I | GGWCC | 3 cut(s) | 237, 1070, 1634 |
| Eco53kI | GAGCTC | 1 cut(s) | 1003 |
| Eco57I | CTGAAG | 1 cut(s) | 217 |
| Eco81I | CCTNAGG | 1 cut(s) | 310 |
| EcoICRI | GAGCTC | 1 cut(s) | 1003 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1121, 1634 |
| EcoRI | GAATTC | 2 cut(s) | 335, 1019 |
| EcoRII | CCWGG | 6 cut(s) | 166, 279, 937, 1513, 1627, 1714 |
| EcoT14I | CCWWGG | 1 cut(s) | 1031 |
| EcoT22I | ATGCAT | 1 cut(s) | 1099 |
| EcoT38I | GRGCYC | 2 cut(s) | 1005, 1405 |
| ErhI | CCWWGG | 1 cut(s) | 1031 |
| FaeI | CATG | 4 cut(s) | 62, 480, 962, 1352 |
| FaqI | GGGAC | 1 cut(s) | 452 |
| FatI | CATG | 4 cut(s) | 58, 476, 958, 1348 |
| Fnu4HI | GCNGC | 8 cut(s) | 30, 363, 489, 575, 578, 1028, 1184, 1592 |
| FokI | GGATG | 6 cut(s) | 569, 809, 1208, 1479, 1517, 1634 |
| FriOI | GRGCYC | 2 cut(s) | 1005, 1405 |
| Fsp4HI | GCNGC | 8 cut(s) | 30, 363, 489, 575, 578, 1028, 1184, 1592 |
| FspBI | CTAG | 3 cut(s) | 759, 1193, 1745 |
| GlaI | GCGC | 4 cut(s) | 6, 224, 746, 1362 |
| GluI | GCNGC | 8 cut(s) | 30, 363, 489, 575, 578, 1028, 1184, 1592 |
| GsuI | CTGGAG | 2 cut(s) | 1419, 1698 |
| HaeII | RGCGCY | 1 cut(s) | 8 |
| HaeIII | GGCC | 5 cut(s) | 1123, 1168, 1220, 1594, 1702 |
| HapII | CCGG | 2 cut(s) | 1456, 1640 |
| HhaI | GCGC | 4 cut(s) | 7, 225, 747, 1363 |
| Hin1II | CATG | 4 cut(s) | 62, 480, 962, 1352 |
| Hin6I | GCGC | 4 cut(s) | 5, 223, 745, 1361 |
| HinP1I | GCGC | 4 cut(s) | 5, 223, 745, 1361 |
| HincII | GTYRAC | 2 cut(s) | 1138, 1153 |
| HindII | GTYRAC | 2 cut(s) | 1138, 1153 |
| HindIII | AAGCTT | 1 cut(s) | 1661 |
| HinfI | GANTC | 7 cut(s) | 107, 948, 1298, 1370, 1452, 1536, 1711 |
| HpaI | GTTAAC | 1 cut(s) | 1138 |
| HpaII | CCGG | 2 cut(s) | 1456, 1640 |
| HphI | GGTGA | 1 cut(s) | 1503 |
| Hpy166II | GTNNAC | 8 cut(s) | 114, 688, 1058, 1073, 1138, 1153, 1606, 1624 |
| Hpy188I | TCNGA | 7 cut(s) | 241, 268, 435, 679, 1375, 1578, 1668 |
| Hpy188III | TCNNGA | 7 cut(s) | 120, 152, 952, 1295, 1447, 1496, 1533 |
| Hpy8I | GTNNAC | 8 cut(s) | 114, 688, 1058, 1073, 1138, 1153, 1606, 1624 |
| Hpy99I | CGWCG | 1 cut(s) | 1296 |
| HpyAV | CCTTC | 4 cut(s) | 547, 684, 1190, 1750 |
| HpyCH4III | ACNGT | 8 cut(s) | 415, 871, 1107, 1214, 1468, 1483, 1573, 1798 |
| HpyCH4IV | ACGT | 4 cut(s) | 453, 740, 1134, 1155 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 26, 38, 494, 742, 1033, 1206, 1588 |
| HpyF3I | CTNAG | 5 cut(s) | 33, 310, 340, 372, 432 |
| HpySE526I | ACGT | 4 cut(s) | 453, 740, 1134, 1155 |
| Hsp92II | CATG | 4 cut(s) | 62, 480, 962, 1352 |
| HspAI | GCGC | 4 cut(s) | 5, 223, 745, 1361 |
| KspAI | GTTAAC | 1 cut(s) | 1138 |
| KspI | CCGCGG | 1 cut(s) | 1592 |
| Kzo9I | GATC | 4 cut(s) | 1273, 1306, 1381, 1508 |
| LguI | GCTCTTC | 1 cut(s) | 993 |
| LmnI | GCTCC | 5 cut(s) | 25, 733, 1008, 1400, 1660 |
| Lsp1109I | GCAGC | 6 cut(s) | 16, 374, 475, 586, 589, 1014 |
| LweI | GCATC | 6 cut(s) | 56, 349, 640, 722, 1106, 1501 |
| MabI | ACCWGGT | 1 cut(s) | 1513 |
| MaeI | CTAG | 3 cut(s) | 759, 1193, 1745 |
| MaeII | ACGT | 4 cut(s) | 453, 740, 1134, 1155 |
| MaeIII | GTNAC | 5 cut(s) | 707, 861, 1171, 1393, 1407 |
| MalI | GATC | 4 cut(s) | 1275, 1308, 1383, 1510 |
| MboI | GATC | 4 cut(s) | 1273, 1306, 1381, 1508 |
| MfeI | CAATTG | 2 cut(s) | 51, 993 |
| MflI | RGATCY | 1 cut(s) | 1381 |
| MhlI | GDGCHC | 3 cut(s) | 1005, 1045, 1405 |
| MlsI | TGGCCA | 1 cut(s) | 1220 |
| MluNI | TGGCCA | 1 cut(s) | 1220 |
| MlyI | GAGTC | 5 cut(s) | 116, 1379, 1446, 1530, 1705 |
| MmeI | TCCRAC | 3 cut(s) | 280, 1285, 1800 |
| Mox20I | TGGCCA | 1 cut(s) | 1220 |
| Mph1103I | ATGCAT | 1 cut(s) | 1099 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1340 |
| MscI | TGGCCA | 1 cut(s) | 1220 |
| MseI | TTAA | 6 cut(s) | 9, 83, 456, 620, 1115, 1137 |
| MslI | CAYNNNNRTG | 2 cut(s) | 63, 475 |
| Msp20I | TGGCCA | 1 cut(s) | 1220 |
| MspA1I | CMGCKG | 3 cut(s) | 1027, 1078, 1591 |
| MspCI | CTTAAG | 1 cut(s) | 8 |
| MspI | CCGG | 2 cut(s) | 1456, 1640 |
| MspR9I | CCNGG | 6 cut(s) | 168, 281, 939, 1515, 1629, 1716 |
| MunI | CAATTG | 2 cut(s) | 51, 993 |
| Mva1269I | GAATGC | 1 cut(s) | 580 |
| MvaI | CCWGG | 6 cut(s) | 168, 281, 939, 1515, 1629, 1716 |
| MvnI | CGCG | 1 cut(s) | 1591 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 26, 38, 494, 742, 1033, 1206, 1588 |
| NdeII | GATC | 4 cut(s) | 1273, 1306, 1381, 1508 |
| NlaIII | CATG | 4 cut(s) | 62, 480, 962, 1352 |
| NlaIV | GGNNCC | 8 cut(s) | 15, 483, 520, 1044, 1122, 1402, 1635, 1644 |
| NmuCI | GTSAC | 1 cut(s) | 1171 |
| NsiI | ATGCAT | 1 cut(s) | 1099 |
| PasI | CCCWGGG | 1 cut(s) | 1628 |
| PciSI | GCTCTTC | 1 cut(s) | 993 |
| PctI | GAATGC | 1 cut(s) | 580 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1340 |
| PfeI | GAWTC | 2 cut(s) | 948, 1298 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 944, 1175 |
| PkrI | GCNGC | 8 cut(s) | 31, 364, 490, 576, 579, 1029, 1185, 1593 |
| PleI | GAGTC | 5 cut(s) | 115, 1378, 1446, 1530, 1705 |
| PpsI | GAGTC | 5 cut(s) | 115, 1378, 1446, 1530, 1705 |
| PpuMI | RGGWCCY | 1 cut(s) | 1634 |
| Psp124BI | GAGCTC | 1 cut(s) | 1005 |
| Psp1406I | AACGTT | 1 cut(s) | 453 |
| Psp5II | RGGWCCY | 1 cut(s) | 1634 |
| Psp6I | CCWGG | 6 cut(s) | 166, 279, 937, 1513, 1627, 1714 |
| PspGI | CCWGG | 6 cut(s) | 166, 279, 937, 1513, 1627, 1714 |
| PspN4I | GGNNCC | 8 cut(s) | 15, 483, 520, 1044, 1122, 1402, 1635, 1644 |
| PspPI | GGNCC | 5 cut(s) | 237, 1070, 1121, 1634, 1700 |
| PspPPI | RGGWCCY | 1 cut(s) | 1634 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1175 |
| PsuI | RGATCY | 1 cut(s) | 1381 |
| PvuII | CAGCTG | 1 cut(s) | 1027 |
| RsaI | GTAC | 4 cut(s) | 95, 113, 441, 1190 |
| RsaNI | GTAC | 4 cut(s) | 94, 112, 440, 1189 |
| RseI | CAYNNNNRTG | 2 cut(s) | 63, 475 |
| SacI | GAGCTC | 1 cut(s) | 1005 |
| SacII | CCGCGG | 1 cut(s) | 1592 |
| SapI | GCTCTTC | 1 cut(s) | 993 |
| SaqAI | TTAA | 6 cut(s) | 9, 83, 456, 620, 1115, 1137 |
| SatI | GCNGC | 8 cut(s) | 30, 363, 489, 575, 578, 1028, 1184, 1592 |
| Sau3AI | GATC | 4 cut(s) | 1273, 1306, 1381, 1508 |
| Sau96I | GGNCC | 5 cut(s) | 237, 1070, 1121, 1634, 1700 |
| ScaI | AGTACT | 1 cut(s) | 95 |
| SchI | GAGTC | 5 cut(s) | 116, 1379, 1446, 1530, 1705 |
| ScrFI | CCNGG | 6 cut(s) | 168, 281, 939, 1515, 1629, 1716 |
| SduI | GDGCHC | 3 cut(s) | 1005, 1045, 1405 |
| SexAI | ACCWGGT | 1 cut(s) | 1513 |
| SfaNI | GCATC | 6 cut(s) | 56, 349, 640, 722, 1106, 1501 |
| SfcI | CTRYAG | 2 cut(s) | 1103, 1479 |
| Sfr303I | CCGCGG | 1 cut(s) | 1592 |
| SgrBI | CCGCGG | 1 cut(s) | 1592 |
| SinI | GGWCC | 3 cut(s) | 237, 1070, 1634 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 63, 475 |
| SmlI | CTYRAG | 4 cut(s) | 8, 89, 952, 1447 |
| SmoI | CTYRAG | 4 cut(s) | 8, 89, 952, 1447 |
| SpeI | ACTAGT | 1 cut(s) | 758 |
| SsiI | CCGC | 4 cut(s) | 1078, 1183, 1589, 1591 |
| SspMI | CTAG | 3 cut(s) | 759, 1193, 1745 |
| SstI | GAGCTC | 1 cut(s) | 1005 |
| StyD4I | CCNGG | 6 cut(s) | 166, 279, 937, 1513, 1627, 1714 |
| StyI | CCWWGG | 1 cut(s) | 1031 |
| TaaI | ACNGT | 8 cut(s) | 415, 871, 1107, 1214, 1468, 1483, 1573, 1798 |
| TaiI | ACGT | 4 cut(s) | 456, 743, 1137, 1158 |
| TaqI | TCGA | 5 cut(s) | 78, 121, 135, 387, 1266 |
| TatI | WGTACW | 1 cut(s) | 93 |
| TauI | GCSGC | 2 cut(s) | 1186, 1594 |
| TfiI | GAWTC | 2 cut(s) | 948, 1298 |
| Tru1I | TTAA | 6 cut(s) | 9, 83, 456, 620, 1115, 1137 |
| Tru9I | TTAA | 6 cut(s) | 9, 83, 456, 620, 1115, 1137 |
| TscAI | CASTG | 4 cut(s) | 426, 1043, 1176, 1363 |
| TseFI | GTSAC | 1 cut(s) | 1171 |
| TseI | GCWGC | 6 cut(s) | 29, 362, 488, 574, 577, 1027 |
| Tsp45I | GTSAC | 1 cut(s) | 1171 |
| TspDTI | ATGAA | 5 cut(s) | 279, 388, 584, 870, 1827 |
| TspGWI | ACGGA | 2 cut(s) | 1280, 1763 |
| TspRI | CASTG | 4 cut(s) | 426, 1043, 1176, 1363 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 944, 1175 |
| Vha464I | CTTAAG | 1 cut(s) | 8 |
| VpaK11BI | GGWCC | 3 cut(s) | 237, 1070, 1634 |
| XapI | RAATTY | 5 cut(s) | 285, 335, 1019, 1612, 1670 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 530 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1340 |
| XspI | CTAG | 3 cut(s) | 759, 1193, 1745 |
| ZrmI | AGTACT | 1 cut(s) | 95 |
| Zsp2I | ATGCAT | 1 cut(s) | 1099 |