Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007444

Physical Location & Seq

Genomic Coordinates Reverse (-)

16848492 .. 16849683

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0195700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTCCGCCAACACCAAGCCCTCTCTCTCTCTTCACTTCCTTTTTAGCCTTCAATTCATCGATTTAACCCAAACTCGATCTGAGAGAGACCTTCTCCTTCACAAAGCCGATCTGTACCGAGCCCAGGCGCTCCTCCTCCGGCCGCTTCCGCCATCTCCGCCATCTCCAAGACCTCTCTCTCTTTGTCTCTTCACTTCATTACATACTCGATCTGAACCTTCAGCTAGCTTACTCGATCTGGGCAGGACTGGAGTCTTCCACCCGATCTCCGACTCTAACCAATCCGCCGCTTCTGAGCTCTTCACCCATGGATCCTTCAACAGTTTAGAAGAGGCGTATGAAGCCCTGAGATCATTTGAGGTTCTCGGGATTGATAAGCCTGATATACGTGCCGCTACTTATTATGCTGTGGCTGGACTTGGAGTCATCGACATGATGAAAGTTCAGAAAAGGGGAAAGCTTCAACTAGAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MACPF

Protein Analysis

158

Amino Acids

17.51

Weight (kDa)

6.97

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24290 AT4G24290
fragaria_vesca	FvH4_5g28650
malus_domestica	MD08G1242200.v1.1 MD15G1435900.v1.1
prunus_persica	Prupe.1G579600_v2.0.a1 Prupe.1G579600_v2.0.a1 Prupe.1G579600_v2.0.a1 Prupe.1G579600_v2.0.a1 Prupe.1G579600_v2.0.a1 Prupe.1G579600_v2.0.a1
pyrus_communis	pycom08g21000 pycom15g38470
rosa_chinensis	RchiOBHm_Chr7g0220651
rosa_laevigata	RLG00000002212
rosa_multiflora	Rmu_ssc0000189.1_g000013
rosa_roxburghii	Rroxscaffold_3G00239260
rosa_rugosa	Rorug07G0195500 Rorug07G0195600 Rorug07G0195700
rosa_samantha	Rh7AG336700 Rh7BG327600 Rh7CG354500 Rh7DG333000
rosa_wichuraiana	Rw7G028710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	6, 143, 149, 158, 285, 288, 393
AclWI	GGATC	2 cut(s)	306, 319
AcoI	YGGCCR	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	3 cut(s)	53, 319, 464
AhdI	GACNNNNNGTC	1 cut(s)	422
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	4 cut(s)	224, 228, 298, 460
AluI	AGCT	4 cut(s)	224, 228, 298, 460
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	81, 191
AlwI	GGATC	2 cut(s)	306, 319
Ama87I	CYCGRG	1 cut(s)	365
AoxI	GGCC	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	295
AsuNHI	GCTAGC	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	365
BamHI	GGATCC	1 cut(s)	311
BanII	GRGCYC	2 cut(s)	124, 300
BbsI	GAAGAC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	300
BccI	CCATC	2 cut(s)	160, 169
BciT130I	CCWGG	1 cut(s)	125
BcoDI	GTCTC	2 cut(s)	81, 191
BfaI	CTAG	2 cut(s)	225, 467
BfoI	RGCGCY	1 cut(s)	131
BisI	GCNGC	3 cut(s)	143, 288, 393
BlsI	GCNGC	3 cut(s)	144, 289, 394
Bme1390I	CCNGG	1 cut(s)	125
BmeRI	GACNNNNNGTC	1 cut(s)	422
BmeT110I	CYCGRG	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	125
BmtI	GCTAGC	1 cut(s)	228
BoxI	GACNNNNGTC	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	247
BplI	GAGNNNNNCTC	2 cut(s)	78, 110
BpmI	CTGGAG	1 cut(s)	270
Bsa29I	ATCGAT	1 cut(s)	60
BsaAI	YACGTR	1 cut(s)	389
BsaI	GGTCTC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	123, 307
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	125
BseCI	ATCGAT	1 cut(s)	60
BseDI	CCNNGG	2 cut(s)	123, 307
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	3 cut(s)	72, 285, 338
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	2 cut(s)	122, 125
BseX3I	CGGCCG	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	142
BshVI	ATCGAT	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	2 cut(s)	81, 191
BsnI	GGCC	1 cut(s)	142
Bso31I	GGTCTC	1 cut(s)	81
BsoBI	CYCGRG	1 cut(s)	365
Bsp1286I	GDGCHC	2 cut(s)	124, 300
Bsp143I	GATC	7 cut(s)	77, 109, 209, 235, 264, 311, 350
Bsp19I	CCATGG	1 cut(s)	307
BspACI	CCGC	7 cut(s)	6, 143, 149, 158, 285, 288, 393
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	3 cut(s)	73, 286, 339
BspDI	ATCGAT	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	313
BspOI	GCTAGC	1 cut(s)	228
BspPI	GGATC	2 cut(s)	306, 319
BspQI	GCTCTTC	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	2 cut(s)	123, 307
BssMI	GATC	7 cut(s)	77, 109, 209, 235, 264, 311, 350
BssT1I	CCWWGG	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	323
Bst6I	CTCTTC	4 cut(s)	36, 194, 305, 324
BstBAI	YACGTR	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	3 cut(s)	81, 294, 347
BstDSI	CCRYGG	1 cut(s)	307
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	7 cut(s)	80, 112, 212, 238, 267, 314, 353
BstMAI	GTCTC	2 cut(s)	81, 191
BstMBI	GATC	7 cut(s)	77, 109, 209, 235, 264, 311, 350
BstMCI	CGRYCG	1 cut(s)	143
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 157, 341
BstNI	CCWGG	1 cut(s)	125
BstPAI	GACNNNNGTC	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BstZI	CGGCCG	1 cut(s)	140
Bsu15I	ATCGAT	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	142
BsuTUI	ATCGAT	1 cut(s)	60
BtgI	CCRYGG	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	226
CfoI	GCGC	1 cut(s)	130
ClaI	ATCGAT	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	2 cut(s)	308, 433
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	3 cut(s)	81, 294, 347
DpnI	GATC	7 cut(s)	79, 111, 211, 237, 266, 313, 352
DpnII	GATC	7 cut(s)	77, 109, 209, 235, 264, 311, 350
DriI	GACNNNNNGTC	1 cut(s)	422
EaeI	YGGCCR	1 cut(s)	140
EagI	CGGCCG	1 cut(s)	140
Eam1104I	CTCTTC	4 cut(s)	36, 194, 305, 324
Eam1105I	GACNNNNNGTC	1 cut(s)	422
EarI	CTCTTC	4 cut(s)	36, 194, 305, 324
EciI	GGCGGA	3 cut(s)	138, 147, 274
Ecl136II	GAGCTC	1 cut(s)	298
EclXI	CGGCCG	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	307
Eco24I	GRGCYC	2 cut(s)	124, 300
Eco31I	GGTCTC	1 cut(s)	81
Eco52I	CGGCCG	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	365
EcoICRI	GAGCTC	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	307
EcoT38I	GRGCYC	2 cut(s)	124, 300
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	2 cut(s)	311, 436
FaiI	YATR	6 cut(s)	204, 309, 339, 386, 405, 434
FatI	CATG	2 cut(s)	307, 432
Fnu4HI	GCNGC	3 cut(s)	143, 288, 393
FriOI	GRGCYC	2 cut(s)	124, 300
Fsp4HI	GCNGC	3 cut(s)	143, 288, 393
FspBI	CTAG	2 cut(s)	225, 467
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	3 cut(s)	143, 288, 393
GsuI	CTGGAG	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	1 cut(s)	139
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	2 cut(s)	311, 436
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	3 cut(s)	252, 272, 423
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	1 cut(s)	295
Hpy188I	TCNGA	5 cut(s)	82, 214, 271, 295, 447
Hpy188III	TCNNGA	1 cut(s)	367
HpyAV	CCTTC	5 cut(s)	59, 101, 107, 228, 325
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	1 cut(s)	388
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 157, 341
HpyF3I	CTNAG	3 cut(s)	81, 294, 347
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	2 cut(s)	311, 436
HspAI	GCGC	1 cut(s)	128
Kzo9I	GATC	7 cut(s)	77, 109, 209, 235, 264, 311, 350
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	9 cut(s)	110, 137, 152, 224, 229, 234, 359, 393, 399
MaeI	CTAG	2 cut(s)	225, 467
MaeII	ACGT	1 cut(s)	388
MalI	GATC	7 cut(s)	79, 111, 211, 237, 266, 313, 352
MboI	GATC	7 cut(s)	77, 109, 209, 235, 264, 311, 350
MboII	GAAGA	5 cut(s)	23, 181, 247, 292, 341
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	2 cut(s)	124, 300
MluCI	AATT	1 cut(s)	53
MlyI	GAGTC	3 cut(s)	261, 266, 432
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	6 cut(s)	31, 143, 146, 183, 325, 352
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	431
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	3 cut(s)	148, 157, 341
NcoI	CCATGG	1 cut(s)	307
NdeII	GATC	7 cut(s)	77, 109, 209, 235, 264, 311, 350
NheI	GCTAGC	1 cut(s)	224
NlaIII	CATG	2 cut(s)	311, 436
NlaIV	GGNNCC	1 cut(s)	313
PciSI	GCTCTTC	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	144, 289, 394
PleI	GAGTC	3 cut(s)	260, 266, 431
PpsI	GAGTC	3 cut(s)	260, 266, 431
Ppu21I	YACGTR	1 cut(s)	389
PshAI	GACNNNNGTC	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	311
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	431
SacI	GAGCTC	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	3 cut(s)	143, 288, 393
Sau3AI	GATC	7 cut(s)	77, 109, 209, 235, 264, 311, 350
SchI	GAGTC	3 cut(s)	261, 266, 432
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	2 cut(s)	124, 300
SetI	ASST	9 cut(s)	93, 175, 220, 226, 230, 300, 363, 391, 462
SmiMI	CAYNNNNRTG	1 cut(s)	431
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	7 cut(s)	6, 143, 149, 158, 285, 288, 393
SspMI	CTAG	2 cut(s)	225, 467
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	5 cut(s)	60, 76, 208, 234, 429
TasI	AATT	1 cut(s)	53
TauI	GCSGC	3 cut(s)	145, 290, 395
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TspDTI	ATGAA	4 cut(s)	46, 186, 354, 452
XspI	CTAG	2 cut(s)	225, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.