Prupe.2G141000_v2.0.a1

Acts in the modification of cell walls via demethylesterification of cell wall pectin

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
19741431 .. 19744411
2981 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G141000.1

Sequence Viewer

Length: 1536 bp
ATGCCAATTCGATTTCACTCAACACTTTTCTTGGTGCTTTATCTCTCTCAAATCATATTTGGTTACTCTCCAAATGATGTGAAAACATGGTGTAGCCAAACTCCTCACCCAAAACTATGTGAGGATTTTCTGAGCCATAACCCAACTACAACCCCCATCAAAGAAAAATCCCAATTCTTCAAGATATCAACCCAACTAGCCCTAGACCGTGCCATCCATGCTCAAACCAACATGCACTCACTTGGCTCAAAGTTCCAAAATGCACACGAAAAAACTGCATGGGCTGATTGCCTTGAGCTCTTTGATTTCACAATCCAAAAGCTCAACAGAACCGTAAATCCCAGCACCAAGTGCACCCAATATGACAAACAAACATGGCTGAGCACAGCTCTCACAAACCTAGAGACATGTCGAGAAGGGTTTGCAGACCTTGGGGTCTCAAATAATTATATCTTCCCTTCAGTGTCAAATAATGTTTCTAATTTGATTAGCAACACTTTGGCCATAAACAAAGCTCCATATACTCCTCAGCCAAACCACAAAAATGGTTTCCCAACTTGGGTGAAGCCGGGCGATCGAAAGCTCTTGCAGTCGTCTTCGCCGACGGCTGATGTTGTGGTGGCCAAAGATGGGTCTGGGAATTACAAGACCATAAGTGAGGCAGTAAGTGCAGCGTCAAAGAGAAAAGGTAGTGCAAGGTATGTGATATATGTGAAGGCAGGGACATATAAGGAAAATGTTCAAATAAAGTCGAAGAATATTATGTTGAGGGGAGATGGCATAGGGAAGACTATTATCACGGGAAGCAAAAGTGTTGGTGGGGGTTCTACAACCTTCAATTCAGCTACAGTTGCTGTGGTTGGAGATGGGTTCATTGCCCAGGACATTACATTCCAAAACACTGCCGGTCCAACAAGTGGCCAAGCCGTGGCACTCCGGTCCGGTTCAGATCTCTCTGTTTTTTACAAATGTGGCTTTGAGGGGAACCAAGACACCCTCTATGTGTACTCTGACAGACAATTCTATAGGGAATGTGACATCTATGGAACTGTTGACTTTATTTTTGGCAATGCTGCTGTGGTTTTCCAAAACTGTAACATTTATGTTCACAACCACAAAACCAACACCATCACTGCCCAGGGTCGGTCTGATCCAAACCAAAATACAGGAATTTCTATTCATAATTGTAGGGTTACAGCTGCTTCGGATTTAAAATCGGTTCAAAGTTCAGTTAAGACATACCTAGGGAGGCCATGGAGAGAGTATTCTCGAACCGTGTTCATGAAGACATACCTTGATAGCTTAATTGACCCAGCTGGTTGGATGGAATGGAGTGGTAACTTTGCCTTGAAGACTTTGTATTATGGTGAGTACATGAACACAGGCCCTGGTTCATCCACTTCAAATAGGGTGAAATGGGCAGGTTACCATGTCATTACAAGTGCCTCGGAGGCTTCCAAATTTACTGTTGGGAACTTCATTGCGGGTAATTCTTGGTTGCCAGCCACCAATGTGCCTTTCACCTCTGGTCTGTGA

Protein Analysis

512

Amino Acids

56.28

Weight (kDa)

9.15

Isoelectric Point (pI)

27.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 434
Acc36I ACCTGC 1 cut(s) 1412
AccB7I CCANNNNNTGG 2 cut(s) 917, 928
AciI CCGC 1 cut(s) 1484
AclWI GGATC 1 cut(s) 1145
AcoI YGGCCR 3 cut(s) 501, 621, 919
AcsI RAATTY 2 cut(s) 1170, 1460
AcuI CTGAAG 1 cut(s) 444
AdeI CACNNNGTG 1 cut(s) 351
AfaI GTAC 2 cut(s) 1007, 1373
AfiI CCNNNNNNNGG 5 cut(s) 559, 630, 917, 928, 1143
AflIII ACRYGT 1 cut(s) 407
AgsI TTSAA 6 cut(s) 181, 743, 838, 1223, 1351, 1404
AjnI CCWGG 3 cut(s) 879, 1137, 1387
AjuI GAANNNNNNNTTGG 2 cut(s) 1502, 1534
AleI CACNNNNGTG 1 cut(s) 1511
AloI GAACNNNNNNTCC 2 cut(s) 322, 354
AluBI AGCT 9 cut(s) 298, 322, 389, 515, 583, 845, 1199, 1302, 1316
AluI AGCT 9 cut(s) 298, 322, 389, 515, 583, 845, 1199, 1302, 1316
Alw21I GWGCWC 3 cut(s) 300, 356, 386
Alw26I GTCTC 2 cut(s) 398, 442
Alw44I GTGCAC 1 cut(s) 352
AlwI GGATC 1 cut(s) 1145
AlwNI CAGNNNCTG 2 cut(s) 854, 1388
AoxI GGCC 5 cut(s) 501, 621, 919, 1250, 1384
ApaLI GTGCAC 1 cut(s) 352
ApeKI GCWGC 3 cut(s) 671, 1073, 1199
ApoI RAATTY 2 cut(s) 1170, 1460
ArsI GACNNNNNNTTYG 2 cut(s) 1046, 1078
Asp700I GAANNNNTTC 1 cut(s) 738
AspA2I CCTAGG 1 cut(s) 1243
AspS9I GGNCC 3 cut(s) 908, 939, 1385
AsuC2I CCSGG 1 cut(s) 570
AsuHPI GGTGA 5 cut(s) 98, 574, 1379, 1423, 1513
AvaII GGWCC 2 cut(s) 908, 939
AvrII CCTAGG 1 cut(s) 1243
BaeGI GKGCMC 1 cut(s) 356
BalI TGGCCA 3 cut(s) 503, 623, 921
BanII GRGCYC 1 cut(s) 300
BbsI GAAGAC 4 cut(s) 588, 794, 1292, 1358
Bbv12I GWGCWC 3 cut(s) 300, 356, 386
BbvCI CCTCAGC 1 cut(s) 528
BbvI GCAGC 3 cut(s) 683, 1060, 1186
BccI CCATC 7 cut(s) 164, 221, 623, 770, 860, 1136, 1318
BceAI ACGGC 2 cut(s) 621, 911
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BciT130I CCWGG 3 cut(s) 881, 1139, 1389
BcnI CCSGG 1 cut(s) 570
BcoDI GTCTC 2 cut(s) 398, 442
BfaI CTAG 4 cut(s) 197, 203, 401, 1244
BfmI CTRYAG 2 cut(s) 846, 1024
BfuAI ACCTGC 1 cut(s) 1412
BglI GCCNNNNNGGC 1 cut(s) 1451
BglII AGATCT 1 cut(s) 949
BisI GCNGC 3 cut(s) 672, 1074, 1200
BlnI CCTAGG 1 cut(s) 1243
BlpI GCTNAGC 1 cut(s) 380
BlsI GCNGC 3 cut(s) 673, 1075, 1201
Bme1390I CCNGG 4 cut(s) 570, 881, 1139, 1389
Bme18I GGWCC 2 cut(s) 908, 939
BmgT120I GGNCC 3 cut(s) 908, 939, 1385
BmiI GGNNCC 1 cut(s) 986
BmrFI CCNGG 4 cut(s) 570, 881, 1139, 1389
BpiI GAAGAC 4 cut(s) 588, 794, 1292, 1358
BplI GAGNNNNNCTC 2 cut(s) 373, 405
Bpu10I CCTNAGC 1 cut(s) 528
Bpu1102I GCTNAGC 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 570
BsaI GGTCTC 1 cut(s) 442
BsaJI CCNNGG 9 cut(s) 430, 879, 927, 1137, 1138, 1243, 1253, 1387, 1446
BsaWI WCCGGW 2 cut(s) 936, 941
Bsc4I CCNNNNNNNGG 5 cut(s) 559, 630, 917, 928, 1143
Bse118I RCCGGY 1 cut(s) 905
Bse3DI GCAATG 3 cut(s) 873, 1075, 1479
BseBI CCWGG 3 cut(s) 881, 1139, 1389
BseDI CCNNGG 9 cut(s) 430, 879, 927, 1137, 1138, 1243, 1253, 1387, 1446
BseGI GGATG 3 cut(s) 213, 1329, 1394
BseLI CCNNNNNNNGG 5 cut(s) 559, 630, 917, 928, 1143
BseMI GCAATG 3 cut(s) 873, 1075, 1479
BseMII CTCAG 3 cut(s) 122, 371, 542
BseRI GAGGAG 2 cut(s) 93, 516
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 3 cut(s) 683, 1060, 1186
BseYI CCCAGC 2 cut(s) 341, 1312
BsgI GTGCAG 1 cut(s) 690
Bsh1285I CGRYCG 1 cut(s) 577
BshFI GGCC 5 cut(s) 503, 623, 921, 1252, 1386
BsiEI CGRYCG 1 cut(s) 577
BsiHKAI GWGCWC 3 cut(s) 300, 356, 386
BsiSI CCGG 4 cut(s) 569, 906, 937, 942
BslFI GGGAC 1 cut(s) 736
BslI CCNNNNNNNGG 5 cut(s) 559, 630, 917, 928, 1143
BsmAI GTCTC 2 cut(s) 398, 442
BsmFI GGGAC 1 cut(s) 736
BsnI GGCC 5 cut(s) 503, 623, 921, 1252, 1386
Bso31I GGTCTC 1 cut(s) 442
Bsp1286I GDGCHC 3 cut(s) 300, 356, 386
Bsp143I GATC 3 cut(s) 574, 949, 1150
Bsp1720I GCTNAGC 1 cut(s) 380
Bsp19I CCATGG 1 cut(s) 1253
BspACI CCGC 1 cut(s) 1484
BspANI GGCC 5 cut(s) 503, 623, 921, 1252, 1386
BspCNI CTCAG 3 cut(s) 123, 372, 541
BspHI TCATGA 1 cut(s) 1281
BspLI GGNNCC 1 cut(s) 986
BspMI ACCTGC 1 cut(s) 1412
BspPI GGATC 1 cut(s) 1145
BspTNI GGTCTC 1 cut(s) 442
BsrDI GCAATG 3 cut(s) 873, 1075, 1479
BsrFI RCCGGY 1 cut(s) 905
BssAI RCCGGY 1 cut(s) 905
BssECI CCNNGG 9 cut(s) 430, 879, 927, 1137, 1138, 1243, 1253, 1387, 1446
BssMI GATC 3 cut(s) 574, 949, 1150
BssT1I CCWWGG 3 cut(s) 430, 1243, 1253
Bst2UI CCWGG 3 cut(s) 881, 1139, 1389
Bst4CI ACNGT 7 cut(s) 209, 334, 850, 1051, 1094, 1276, 1468
BstAPI GCANNNNNTGC 2 cut(s) 351, 668
BstC8I GCNNGC 1 cut(s) 1503
BstDEI CTNAG 3 cut(s) 131, 380, 528
BstDSI CCRYGG 2 cut(s) 927, 1253
BstEII GGTNACC 1 cut(s) 1424
BstF5I GGATG 3 cut(s) 213, 1329, 1394
BstKTI GATC 3 cut(s) 577, 952, 1153
BstMAI GTCTC 2 cut(s) 398, 442
BstMBI GATC 3 cut(s) 574, 949, 1150
BstMCI CGRYCG 1 cut(s) 577
BstMWI GCNNNNNNNGC 5 cut(s) 218, 351, 668, 851, 1451
BstNI CCWGG 3 cut(s) 881, 1139, 1389
BstNSI RCATGY 2 cut(s) 235, 411
BstPI GGTNACC 1 cut(s) 1424
BstSCI CCNGG 4 cut(s) 568, 879, 1137, 1387
BstSFI CTRYAG 2 cut(s) 846, 1024
BstSLI GKGCMC 1 cut(s) 356
BstV1I GCAGC 3 cut(s) 683, 1060, 1186
BstV2I GAAGAC 4 cut(s) 588, 794, 1292, 1358
BstX2I RGATCY 1 cut(s) 949
BstXI CCANNNNNNTGG 2 cut(s) 545, 1320
BstYI RGATCY 1 cut(s) 949
BsuRI GGCC 5 cut(s) 503, 623, 921, 1252, 1386
BtgI CCRYGG 2 cut(s) 927, 1253
BtsCI GGATG 3 cut(s) 213, 1329, 1394
BtsI GCAGTG 2 cut(s) 900, 1131
BtsIMutI CAGTG 3 cut(s) 468, 900, 1131
BveI ACCTGC 1 cut(s) 1412
Cac8I GCNNGC 1 cut(s) 1503
CaiI CAGNNNCTG 2 cut(s) 854, 1388
CciI TCATGA 1 cut(s) 1281
Cfr10I RCCGGY 1 cut(s) 905
Cfr13I GGNCC 3 cut(s) 908, 939, 1385
CpoI CGGWCCG 1 cut(s) 939
CseI GACGC 1 cut(s) 663
Csp6I GTAC 2 cut(s) 1006, 1372
CspI CGGWCCG 1 cut(s) 939
CviQI GTAC 2 cut(s) 1006, 1372
DdeI CTNAG 3 cut(s) 131, 380, 528
DpnI GATC 3 cut(s) 576, 951, 1152
DpnII GATC 3 cut(s) 574, 949, 1150
DraI TTTAAA 1 cut(s) 1212
DraIII CACNNNGTG 1 cut(s) 351
DrdI GACNNNNNNGTC 1 cut(s) 434
DseDI GACNNNNNNGTC 1 cut(s) 434
EaeI YGGCCR 3 cut(s) 501, 621, 919
Ecl136II GAGCTC 1 cut(s) 298
Eco130I CCWWGG 3 cut(s) 430, 1243, 1253
Eco24I GRGCYC 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 442
Eco32I GATATC 1 cut(s) 186
Eco47I GGWCC 2 cut(s) 908, 939
Eco53kI GAGCTC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 444
Eco91I GGTNACC 1 cut(s) 1424
EcoICRI GAGCTC 1 cut(s) 298
EcoO109I RGGNCCY 1 cut(s) 1385
EcoO65I GGTNACC 1 cut(s) 1424
EcoRII CCWGG 3 cut(s) 879, 1137, 1387
EcoRV GATATC 1 cut(s) 186
EcoT14I CCWWGG 3 cut(s) 430, 1243, 1253
EcoT38I GRGCYC 1 cut(s) 300
ErhI CCWWGG 3 cut(s) 430, 1243, 1253
FaqI GGGAC 1 cut(s) 736
FauI CCCGC 1 cut(s) 1477
Fnu4HI GCNGC 3 cut(s) 672, 1074, 1200
FokI GGATG 3 cut(s) 200, 1336, 1381
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 3 cut(s) 672, 1074, 1200
FspBI CTAG 4 cut(s) 197, 203, 401, 1244
GluI GCNGC 3 cut(s) 672, 1074, 1200
GsaI CCCAGC 2 cut(s) 345, 1316
HaeIII GGCC 5 cut(s) 503, 623, 921, 1252, 1386
HapII CCGG 4 cut(s) 569, 906, 937, 942
HgaI GACGC 1 cut(s) 663
HincII GTYRAC 1 cut(s) 1054
HindII GTYRAC 1 cut(s) 1054
HpaII CCGG 4 cut(s) 569, 906, 937, 942
HphI GGTGA 5 cut(s) 98, 574, 1379, 1423, 1513
Hpy166II GTNNAC 4 cut(s) 354, 1006, 1054, 1108
Hpy188I TCNGA 6 cut(s) 132, 949, 1012, 1150, 1207, 1450
Hpy188III TCNNGA 4 cut(s) 181, 413, 1269, 1282
Hpy8I GTNNAC 4 cut(s) 354, 1006, 1054, 1108
Hpy99I CGWCG 1 cut(s) 607
HpyAV CCTTC 4 cut(s) 410, 468, 709, 844
HpyCH4III ACNGT 7 cut(s) 209, 334, 850, 1051, 1094, 1276, 1468
HpyCH4V TGCA 8 cut(s) 235, 263, 278, 354, 425, 589, 671, 695
HpyF10VI GCNNNNNNNGC 5 cut(s) 218, 351, 668, 851, 1451
HpyF3I CTNAG 3 cut(s) 131, 380, 528
Kzo9I GATC 3 cut(s) 574, 949, 1150
LmnI GCTCC 1 cut(s) 520
Lsp1109I GCAGC 3 cut(s) 683, 1060, 1186
MaeI CTAG 4 cut(s) 197, 203, 401, 1244
MaeIII GTNAC 6 cut(s) 62, 1034, 1094, 1192, 1337, 1424
MalI GATC 3 cut(s) 576, 951, 1152
MboI GATC 3 cut(s) 574, 949, 1150
MboII GAAGA 7 cut(s) 169, 445, 588, 766, 799, 1297, 1363
MflI RGATCY 1 cut(s) 949
MhlI GDGCHC 3 cut(s) 300, 356, 386
MlsI TGGCCA 3 cut(s) 503, 623, 921
MluNI TGGCCA 3 cut(s) 503, 623, 921
MmeI TCCRAC 3 cut(s) 841, 935, 1301
Mox20I TGGCCA 3 cut(s) 503, 623, 921
MroXI GAANNNNTTC 1 cut(s) 738
MscI TGGCCA 3 cut(s) 503, 623, 921
MseI TTAA 3 cut(s) 1211, 1233, 1304
MslI CAYNNNNRTG 2 cut(s) 543, 1511
Msp20I TGGCCA 3 cut(s) 503, 623, 921
MspA1I CMGCKG 2 cut(s) 1199, 1316
MspI CCGG 4 cut(s) 569, 906, 937, 942
MspR9I CCNGG 4 cut(s) 570, 881, 1139, 1389
MvaI CCWGG 3 cut(s) 881, 1139, 1389
MwoI GCNNNNNNNGC 5 cut(s) 218, 351, 668, 851, 1451
NciI CCSGG 1 cut(s) 570
NcoI CCATGG 1 cut(s) 1253
NdeII GATC 3 cut(s) 574, 949, 1150
NlaIV GGNNCC 1 cut(s) 986
NmuCI GTSAC 1 cut(s) 1034
NspI RCATGY 2 cut(s) 235, 411
OliI CACNNNNGTG 1 cut(s) 1511
PagI TCATGA 1 cut(s) 1281
PasI CCCWGGG 1 cut(s) 1138
PciI ACATGT 1 cut(s) 407
PcsI WCGNNNNNNNCGW 1 cut(s) 599
PdmI GAANNNNTTC 1 cut(s) 738
PflMI CCANNNNNTGG 2 cut(s) 917, 928
PkrI GCNGC 3 cut(s) 673, 1075, 1201
Ple19I CGATCG 1 cut(s) 577
PscI ACATGT 1 cut(s) 407
Psp124BI GAGCTC 1 cut(s) 300
Psp6I CCWGG 3 cut(s) 879, 1137, 1387
PspEI GGTNACC 1 cut(s) 1424
PspFI CCCAGC 2 cut(s) 341, 1312
PspGI CCWGG 3 cut(s) 879, 1137, 1387
PspN4I GGNNCC 1 cut(s) 986
PspPI GGNCC 3 cut(s) 908, 939, 1385
PstNI CAGNNNCTG 2 cut(s) 854, 1388
PsuI RGATCY 1 cut(s) 949
PvuI CGATCG 1 cut(s) 577
PvuII CAGCTG 2 cut(s) 1199, 1316
RsaI GTAC 2 cut(s) 1007, 1373
RsaNI GTAC 2 cut(s) 1006, 1372
RseI CAYNNNNRTG 2 cut(s) 543, 1511
Rsr2I CGGWCCG 1 cut(s) 939
RsrII CGGWCCG 1 cut(s) 939
SacI GAGCTC 1 cut(s) 300
SaqAI TTAA 3 cut(s) 1211, 1233, 1304
SatI GCNGC 3 cut(s) 672, 1074, 1200
Sau3AI GATC 3 cut(s) 574, 949, 1150
Sau96I GGNCC 3 cut(s) 908, 939, 1385
ScrFI CCNGG 4 cut(s) 570, 881, 1139, 1389
SduI GDGCHC 3 cut(s) 300, 356, 386
SfcI CTRYAG 2 cut(s) 846, 1024
SinI GGWCC 2 cut(s) 908, 939
SmiMI CAYNNNNRTG 2 cut(s) 543, 1511
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
SsiI CCGC 1 cut(s) 1484
SspI AATATT 1 cut(s) 760
SspMI CTAG 4 cut(s) 197, 203, 401, 1244
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 4 cut(s) 568, 879, 1137, 1387
StyI CCWWGG 3 cut(s) 430, 1243, 1253
TaaI ACNGT 7 cut(s) 209, 334, 850, 1051, 1094, 1276, 1468
TaqI TCGA 5 cut(s) 10, 412, 577, 752, 1270
TaqII GACCGA 1 cut(s) 1134
TatI WGTACW 2 cut(s) 1005, 1371
Tru1I TTAA 3 cut(s) 1211, 1233, 1304
Tru9I TTAA 3 cut(s) 1211, 1233, 1304
TscAI CASTG 3 cut(s) 468, 907, 1138
TseFI GTSAC 1 cut(s) 1034
TseI GCWGC 3 cut(s) 671, 1073, 1199
Tsp45I GTSAC 1 cut(s) 1034
TspDTI ATGAA 7 cut(s) 862, 1169, 1270, 1298, 1383, 1391, 1468
TspRI CASTG 3 cut(s) 468, 907, 1138
Van91I CCANNNNNTGG 2 cut(s) 917, 928
VneI GTGCAC 1 cut(s) 352
VpaK11BI GGWCC 2 cut(s) 908, 939
XapI RAATTY 2 cut(s) 1170, 1460
XceI RCATGY 2 cut(s) 235, 411
XmaJI CCTAGG 1 cut(s) 1243
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 4 cut(s) 197, 203, 401, 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.