Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004889

Physical Location & Seq

Genomic Coordinates Forward (+)

28490087 .. 28493711

Gene Structure 3625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0204300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGAAAATCTAAAAATTAACGTGCCGGCTCCCAGCCGAGCTGATATAGTAAAAGACGATTTTGCCCCCGCCTGCGTTTCTTGCCTCAACACCTGGTGTACTGCTCAGTCCTATCGTGTCTTCGCTACTTCAATCCACAGAGAGAGAGAGAGAGGACTGAAATTGGAGAGGAGGAAGGGAGAATTTATCAAGGCCAAGGAAGGTATTGCTTCTTCTTGCTCTGGGTGGTTGTTTGTGAATTTTTCAGAATGGAGTAGCAGAGAAGAATTGCTGTTAATGGTGGAGGAGGGAGATGCAATTGAAAATCAGAGAAAGAAAGATAAGAAGAAGCTTGAAGTAGAGAAATCAAAGAAGATGCTAGCTTCTGCAATTATTTGGGTTAATCCTTTCTTCTCAATCTACTGTGGAATGAGGGGAGGGACTGACAAGAGGAATGGTGTTGAGGCAAGGAACAAGTACCATCCCCCGATGTTGCTGAAGGGACATCAATTTAAAAATGCTTCTTTGCTGGCAGACTTGGCTGGTGCAAGGGGGATGAGAGTAAAATGGAAGATATGTTCTAGAGGGGCTCTGAGAGCTGCAAACTCCAATACCTCTGTACCTCCAAGGGGAAGGACACTGCAATCAGAGACCAAGCTTCAGTGCTTTGACCCTGTAACGATGAAATACTTGGGATATTATCCTGCATTGACACCTGATGTGGTCAAGGAGGGGGTAGCACGAGCAAGTAAGGCACAGAAAACATGGGCAAAGAGTAGCTTCTTCGGATTATTCTCAAGTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

261

Amino Acids

29.35

Weight (kDa)

9.77

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45220
fragaria_vesca	FvH4_7g11320 FvH4_7g27760
malus_domestica	MD02G1207900.v1.1 MD07G1255000.v1.1 MD11G1195500.v1.1
prunus_persica	Prupe.2G141000_v2.0.a1 Prupe.2G278200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0349521 RchiOBHm_Chr1g0374551
rosa_laevigata	RLG00000026729 RLG00000028541 RLG00000028544
rosa_multiflora	Rmu_sc0002495.1_g000016 Rmu_sc0002495.1_g000029 Rmu_sc0004947.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283410 Rroxscaffold_4G00305490
rosa_rugosa	Rorug01G0204300 Rorug01G0384100
rosa_samantha	Rh1AG394800 Rh1BG187700 Rh1BG359500 Rh1CG206500 Rh1CG372600 Rh1DG217200 Rh1DG390100
rosa_wichuraiana	Rw1G018840 Rw1G018870 Rw1G035010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	69
AcsI	RAATTY	2 cut(s)	182, 238
AcuI	CTGAAG	2 cut(s)	497, 623
AdeI	CACNNNGTG	1 cut(s)	96
AfaI	GTAC	3 cut(s)	100, 458, 600
AfiI	CCNNNNNNNGG	1 cut(s)	608
AgsI	TTSAA	3 cut(s)	132, 302, 335
AjnI	CCWGG	1 cut(s)	92
AloI	GAACNNNNNNTCC	2 cut(s)	541, 573
AluBI	AGCT	6 cut(s)	41, 331, 362, 578, 637, 759
AluI	AGCT	6 cut(s)	41, 331, 362, 578, 637, 759
Alw26I	GTCTC	1 cut(s)	623
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	578
ApoI	RAATTY	2 cut(s)	182, 238
AsuNHI	GCTAGC	1 cut(s)	358
BaeI	ACNNNNGTAYC	2 cut(s)	582, 615
BanII	GRGCYC	1 cut(s)	571
BarI	GAAGNNNNNNTAC	2 cut(s)	196, 228
BauI	CACGAG	1 cut(s)	720
BbsI	GAAGAC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	565
BccI	CCATC	1 cut(s)	468
BciT130I	CCWGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	2 cut(s)	359, 561
BisI	GCNGC	1 cut(s)	579
BlsI	GCNGC	1 cut(s)	580
Bme1390I	CCNGG	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	2 cut(s)	283, 345
BmtI	GCTAGC	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	760
BsaI	GGTCTC	1 cut(s)	623
BsaJI	CCNNGG	2 cut(s)	195, 605
Bsc4I	CCNNNNNNNGG	1 cut(s)	608
Bse118I	RCCGGY	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	195, 605
BseGI	GGATG	2 cut(s)	460, 540
BseLI	CCNNNNNNNGG	1 cut(s)	608
BseMII	CTCAG	2 cut(s)	119, 563
BseRI	GAGGAG	2 cut(s)	184, 299
BseXI	GCAGC	1 cut(s)	565
BseYI	CCCAGC	1 cut(s)	32
BshFI	GGCC	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	2 cut(s)	433, 495
BslI	CCNNNNNNNGG	1 cut(s)	608
BsmAI	GTCTC	1 cut(s)	623
BsmFI	GGGAC	2 cut(s)	433, 495
BsnI	GGCC	1 cut(s)	194
Bso31I	GGTCTC	1 cut(s)	623
Bsp1286I	GDGCHC	1 cut(s)	571
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	2 cut(s)	118, 564
BspLI	GGNNCC	1 cut(s)	30
BspOI	GCTAGC	1 cut(s)	362
BspTNI	GGTCTC	1 cut(s)	623
BsrFI	RCCGGY	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	195, 605
BssSI	CACGAG	1 cut(s)	720
BssT1I	CCWWGG	2 cut(s)	195, 605
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	404
BstC8I	GCNNGC	4 cut(s)	27, 73, 360, 510
BstDEI	CTNAG	2 cut(s)	105, 572
BstF5I	GGATG	2 cut(s)	460, 540
BstMAI	GTCTC	1 cut(s)	623
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 518, 575, 731
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	565
BstV2I	GAAGAC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	2 cut(s)	460, 540
BtsI	GCAGTG	1 cut(s)	617
BtsIMutI	CAGTG	2 cut(s)	617, 647
Cac8I	GCNNGC	4 cut(s)	27, 73, 360, 510
Cfr10I	RCCGGY	1 cut(s)	25
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	99, 457, 599
CviAII	CATG	1 cut(s)	744
CviQI	GTAC	3 cut(s)	99, 457, 599
DdeI	CTNAG	2 cut(s)	105, 572
DraI	TTTAAA	1 cut(s)	493
DraIII	CACNNNGTG	1 cut(s)	96
Eco130I	CCWWGG	2 cut(s)	195, 605
Eco24I	GRGCYC	1 cut(s)	571
Eco31I	GGTCTC	1 cut(s)	623
Eco57I	CTGAAG	2 cut(s)	497, 623
EcoRII	CCWGG	1 cut(s)	92
EcoT14I	CCWWGG	2 cut(s)	195, 605
EcoT38I	GRGCYC	1 cut(s)	571
ErhI	CCWWGG	2 cut(s)	195, 605
FaeI	CATG	1 cut(s)	747
FaiI	YATR	5 cut(s)	47, 556, 745, 782, 784
FalI	AAGNNNNNCTT	2 cut(s)	743, 775
FaqI	GGGAC	2 cut(s)	433, 495
FatI	CATG	1 cut(s)	743
FauI	CCCGC	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	579
FokI	GGATG	2 cut(s)	447, 547
FriOI	GRGCYC	1 cut(s)	571
Fsp4HI	GCNGC	1 cut(s)	579
FspBI	CTAG	2 cut(s)	359, 561
GluI	GCNGC	1 cut(s)	579
GsaI	CCCAGC	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	1 cut(s)	747
HindIII	AAGCTT	2 cut(s)	329, 635
HpaII	CCGG	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	5 cut(s)	247, 309, 573, 628, 767
Hpy188III	TCNNGA	1 cut(s)	561
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	4 cut(s)	169, 194, 472, 606
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	6 cut(s)	296, 368, 527, 581, 622, 686
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 518, 575, 731
HpyF3I	CTNAG	2 cut(s)	105, 572
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	747
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	1 cut(s)	565
LweI	GCATC	2 cut(s)	283, 345
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	2 cut(s)	359, 561
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	655
MboII	GAAGA	8 cut(s)	112, 204, 275, 337, 364, 382, 562, 754
MfeI	CAATTG	1 cut(s)	297
MhlI	GDGCHC	1 cut(s)	571
MluCI	AATT	8 cut(s)	15, 161, 182, 238, 266, 297, 369, 488
MroNI	GCCGGC	1 cut(s)	25
MseI	TTAA	4 cut(s)	18, 275, 381, 492
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	94
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	4 cut(s)	81, 518, 575, 731
NaeI	GCCGGC	1 cut(s)	27
NgoMIV	GCCGGC	1 cut(s)	25
NheI	GCTAGC	1 cut(s)	358
NlaIII	CATG	1 cut(s)	747
NlaIV	GGNNCC	1 cut(s)	30
NmeAIII	GCCGAG	1 cut(s)	62
PdiI	GCCGGC	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	580
Psp6I	CCWGG	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	30
RsaI	GTAC	3 cut(s)	100, 458, 600
RsaNI	GTAC	3 cut(s)	99, 457, 599
SaqAI	TTAA	4 cut(s)	18, 275, 381, 492
SatI	GCNGC	1 cut(s)	579
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	571
SexAI	ACCWGGT	1 cut(s)	92
SfaNI	GCATC	2 cut(s)	283, 345
SmlI	CTYRAG	1 cut(s)	775
SmoI	CTYRAG	1 cut(s)	775
Sse9I	AATT	8 cut(s)	15, 161, 182, 238, 266, 297, 369, 488
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	2 cut(s)	359, 561
StyD4I	CCNGG	1 cut(s)	92
StyI	CCWWGG	2 cut(s)	195, 605
TaaI	ACNGT	1 cut(s)	404
TaiI	ACGT	1 cut(s)	24
TasI	AATT	8 cut(s)	15, 161, 182, 238, 266, 297, 369, 488
TatI	WGTACW	1 cut(s)	98
Tru1I	TTAA	4 cut(s)	18, 275, 381, 492
Tru9I	TTAA	4 cut(s)	18, 275, 381, 492
TscAI	CASTG	2 cut(s)	624, 647
TseI	GCWGC	1 cut(s)	578
TspDTI	ATGAA	1 cut(s)	677
TspRI	CASTG	2 cut(s)	624, 647
XapI	RAATTY	2 cut(s)	182, 238
XbaI	TCTAGA	1 cut(s)	560
XspI	CTAG	2 cut(s)	359, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.