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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G39300 AT2G39300 AT2G39300 AT2G39300 AT3G55060 AT3G55060 AT3G55060 |
| fragaria_vesca | FvH4_7g20660 FvH4_7g20660 FvH4_7g20660 FvH4_7g20660 FvH4_7g20660 FvH4_7g20660 FvH4_7g20660 |
| malus_domestica | MD07G1183400.v1.1 |
| prunus_persica | Prupe.2G222100_v2.0.a1 Prupe.2G222100_v2.0.a1 Prupe.2G222100_v2.0.a1 Prupe.2G222100_v2.0.a1 |
| pyrus_communis | pycom07g17600 |
| rosa_chinensis | RchiOBHm_Chr1g0364701 |
| rosa_laevigata | RLG00000027465 |
| rosa_multiflora | Rmu_ssc0000112.1_g000033 |
| rosa_roxburghii | Rroxscaffold_4G00291730 Rroxscaffold_4G00292160 |
| rosa_rugosa | Rorug01G0317800 Rorug01G0317900 Rorug01G0318000 Rorug01G0318100 |
| rosa_samantha | Rh1AG326800 Rh1BG288100 Rh1CG304800 Rh1DG319700 |
| rosa_wichuraiana | Rw1G028950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1166 |
| Acc36I | ACCTGC | 1 cut(s) | 1661 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 723, 1726 |
| AccBSI | CCGCTC | 1 cut(s) | 1357 |
| AccII | CGCG | 1 cut(s) | 637 |
| AccIII | TCCGGA | 1 cut(s) | 379 |
| AciI | CCGC | 4 cut(s) | 635, 1357, 1559, 1624 |
| AclWI | GGATC | 2 cut(s) | 1946, 1963 |
| AcoI | YGGCCR | 2 cut(s) | 126, 349 |
| AcsI | RAATTY | 7 cut(s) | 468, 1450, 1706, 1999, 2009, 2271, 2541 |
| AfaI | GTAC | 1 cut(s) | 1085 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 723, 1726, 1803 |
| AflII | CTTAAG | 3 cut(s) | 1313, 1466, 2453 |
| AflIII | ACRYGT | 1 cut(s) | 2598 |
| AgeI | ACCGGT | 1 cut(s) | 1869 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1294 |
| AjnI | CCWGG | 3 cut(s) | 211, 665, 2493 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 723, 755, 1316, 1348, 1709, 1741 |
| Alw21I | GWGCWC | 3 cut(s) | 494, 643, 1985 |
| Alw26I | GTCTC | 7 cut(s) | 714, 754, 801, 936, 965, 1390, 2223 |
| AlwI | GGATC | 2 cut(s) | 1946, 1963 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 723, 2354 |
| Aor13HI | TCCGGA | 1 cut(s) | 379 |
| AoxI | GGCC | 7 cut(s) | 126, 349, 443, 1471, 1794, 2029, 2175 |
| ApeKI | GCWGC | 5 cut(s) | 245, 1556, 2155, 2348, 2351 |
| ApoI | RAATTY | 7 cut(s) | 468, 1450, 1706, 1999, 2009, 2271, 2541 |
| AseI | ATTAAT | 2 cut(s) | 2205, 2619 |
| AsiGI | ACCGGT | 1 cut(s) | 1869 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 11, 137, 1065 |
| AspLEI | GCGC | 1 cut(s) | 1167 |
| AspS9I | GGNCC | 3 cut(s) | 532, 1471, 2434 |
| AsuC2I | CCSGG | 1 cut(s) | 757 |
| AsuHPI | GGTGA | 7 cut(s) | 131, 464, 654, 841, 1712, 2410, 2587 |
| AvaII | GGWCC | 2 cut(s) | 532, 2434 |
| AxyI | CCTNAGG | 1 cut(s) | 150 |
| BalI | TGGCCA | 1 cut(s) | 351 |
| BanII | GRGCYC | 4 cut(s) | 494, 643, 673, 1985 |
| BbsI | GAAGAC | 3 cut(s) | 987, 1676, 2661 |
| Bbv12I | GWGCWC | 3 cut(s) | 494, 643, 1985 |
| BbvCI | CCTCAGC | 1 cut(s) | 1020 |
| BbvI | GCAGC | 5 cut(s) | 257, 1568, 2142, 2360, 2363 |
| BceAI | ACGGC | 1 cut(s) | 2698 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1331, 1365 |
| BciT130I | CCWGG | 3 cut(s) | 213, 667, 2495 |
| BciVI | GTATCC | 1 cut(s) | 2523 |
| BclI | TGATCA | 2 cut(s) | 1117, 2227 |
| BcnI | CCSGG | 1 cut(s) | 757 |
| BcoDI | GTCTC | 7 cut(s) | 714, 754, 801, 936, 965, 1390, 2223 |
| BfaI | CTAG | 9 cut(s) | 36, 201, 437, 465, 507, 591, 1241, 1286, 1916 |
| BfmI | CTRYAG | 2 cut(s) | 1157, 2444 |
| BfrI | CTTAAG | 3 cut(s) | 1313, 1466, 2453 |
| BfuAI | ACCTGC | 1 cut(s) | 1661 |
| BfuI | GTATCC | 1 cut(s) | 2523 |
| BglII | AGATCT | 3 cut(s) | 23, 305, 877 |
| BisI | GCNGC | 5 cut(s) | 246, 1557, 2156, 2349, 2352 |
| BlsI | GCNGC | 5 cut(s) | 247, 1558, 2157, 2350, 2353 |
| Bme1390I | CCNGG | 4 cut(s) | 213, 667, 757, 2495 |
| Bme18I | GGWCC | 2 cut(s) | 532, 2434 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1294 |
| BmgT120I | GGNCC | 3 cut(s) | 532, 1471, 2434 |
| BmiI | GGNNCC | 2 cut(s) | 227, 460 |
| BmrFI | CCNGG | 4 cut(s) | 213, 667, 757, 2495 |
| BmrI | ACTGGG | 3 cut(s) | 94, 733, 1981 |
| BmsI | GCATC | 3 cut(s) | 1587, 2439, 2507 |
| BmuI | ACTGGG | 3 cut(s) | 94, 733, 1981 |
| BpiI | GAAGAC | 3 cut(s) | 987, 1676, 2661 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 773, 805 |
| BpmI | CTGGAG | 2 cut(s) | 1241, 2477 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1020 |
| BpuEI | CTTGAG | 5 cut(s) | 901, 960, 1160, 1340, 1819 |
| BpuMI | CCSGG | 1 cut(s) | 757 |
| Bsa29I | ATCGAT | 1 cut(s) | 1967 |
| BsaBI | GATNNNNATC | 3 cut(s) | 108, 2232, 2684 |
| BsaI | GGTCTC | 1 cut(s) | 2223 |
| BsaJI | CCNNGG | 3 cut(s) | 665, 666, 755 |
| BsaWI | WCCGGW | 2 cut(s) | 379, 1869 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 361, 391, 1967, 1997 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 723, 1726, 1803 |
| Bse118I | RCCGGY | 2 cut(s) | 228, 1869 |
| Bse21I | CCTNAGG | 1 cut(s) | 150 |
| Bse3DI | GCAATG | 3 cut(s) | 46, 1167, 2403 |
| Bse8I | GATNNNNATC | 3 cut(s) | 108, 2232, 2684 |
| BseAI | TCCGGA | 1 cut(s) | 379 |
| BseBI | CCWGG | 3 cut(s) | 213, 667, 2495 |
| BseCI | ATCGAT | 1 cut(s) | 1967 |
| BseDI | CCNNGG | 3 cut(s) | 665, 666, 755 |
| BseGI | GGATG | 6 cut(s) | 518, 713, 913, 994, 1578, 2467 |
| BseJI | GATNNNNATC | 3 cut(s) | 108, 2232, 2684 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 723, 1726, 1803 |
| BseMI | GCAATG | 3 cut(s) | 46, 1167, 2403 |
| BseMII | CTCAG | 7 cut(s) | 656, 1011, 1164, 1213, 1419, 1545, 2625 |
| BseRI | GAGGAG | 6 cut(s) | 451, 484, 1037, 1517, 2564, 2585 |
| BseXI | GCAGC | 5 cut(s) | 257, 1568, 2142, 2360, 2363 |
| BseYI | CCCAGC | 1 cut(s) | 1486 |
| Bsh1236I | CGCG | 1 cut(s) | 637 |
| BshFI | GGCC | 7 cut(s) | 128, 351, 445, 1473, 1796, 2031, 2177 |
| BshTI | ACCGGT | 1 cut(s) | 1869 |
| BshVI | ATCGAT | 1 cut(s) | 1967 |
| BsiHKAI | GWGCWC | 3 cut(s) | 494, 643, 1985 |
| BsiSI | CCGG | 4 cut(s) | 229, 380, 757, 1870 |
| BslFI | GGGAC | 1 cut(s) | 2718 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 723, 1726, 1803 |
| BsmAI | GTCTC | 7 cut(s) | 714, 754, 801, 936, 965, 1390, 2223 |
| BsmFI | GGGAC | 1 cut(s) | 2718 |
| BsnI | GGCC | 7 cut(s) | 128, 351, 445, 1473, 1796, 2031, 2177 |
| Bso31I | GGTCTC | 1 cut(s) | 2223 |
| Bsp1286I | GDGCHC | 4 cut(s) | 494, 643, 673, 1985 |
| Bsp13I | TCCGGA | 1 cut(s) | 379 |
| Bsp143I | GATC | 9 cut(s) | 23, 305, 872, 877, 1117, 1938, 1968, 2227, 2679 |
| BspACI | CCGC | 4 cut(s) | 635, 1357, 1559, 1624 |
| BspANI | GGCC | 7 cut(s) | 128, 351, 445, 1473, 1796, 2031, 2177 |
| BspCNI | CTCAG | 7 cut(s) | 655, 1012, 1165, 1212, 1420, 1544, 2624 |
| BspDI | ATCGAT | 1 cut(s) | 1967 |
| BspEI | TCCGGA | 1 cut(s) | 379 |
| BspFNI | CGCG | 1 cut(s) | 637 |
| BspLI | GGNNCC | 2 cut(s) | 227, 460 |
| BspMAI | CTGCAG | 1 cut(s) | 2448 |
| BspMI | ACCTGC | 1 cut(s) | 1661 |
| BspPI | GGATC | 2 cut(s) | 1946, 1963 |
| BspQI | GCTCTTC | 2 cut(s) | 17, 1332 |
| BspTI | CTTAAG | 3 cut(s) | 1313, 1466, 2453 |
| BspTNI | GGTCTC | 1 cut(s) | 2223 |
| BsrBI | CCGCTC | 1 cut(s) | 1357 |
| BsrDI | GCAATG | 3 cut(s) | 46, 1167, 2403 |
| BsrFI | RCCGGY | 2 cut(s) | 228, 1869 |
| BssAI | RCCGGY | 2 cut(s) | 228, 1869 |
| BssECI | CCNNGG | 3 cut(s) | 665, 666, 755 |
| BssMI | GATC | 9 cut(s) | 23, 305, 872, 877, 1117, 1938, 1968, 2227, 2679 |
| Bst2UI | CCWGG | 3 cut(s) | 213, 667, 2495 |
| Bst4CI | ACNGT | 7 cut(s) | 476, 536, 795, 956, 1102, 1161, 2518 |
| Bst6I | CTCTTC | 5 cut(s) | 17, 292, 1332, 1590, 2185 |
| BstAFI | CTTAAG | 3 cut(s) | 1313, 1466, 2453 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1801 |
| BstF5I | GGATG | 6 cut(s) | 518, 713, 913, 994, 1578, 2467 |
| BstFNI | CGCG | 1 cut(s) | 637 |
| BstHHI | GCGC | 1 cut(s) | 1167 |
| BstKTI | GATC | 9 cut(s) | 26, 308, 875, 880, 1120, 1941, 1971, 2230, 2682 |
| BstMAI | GTCTC | 7 cut(s) | 714, 754, 801, 936, 965, 1390, 2223 |
| BstMBI | GATC | 9 cut(s) | 23, 305, 872, 877, 1117, 1938, 1968, 2227, 2679 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1178, 1354, 1375, 1765, 2345 |
| BstNI | CCWGG | 3 cut(s) | 213, 667, 2495 |
| BstNSI | RCATGY | 1 cut(s) | 2602 |
| BstSCI | CCNGG | 4 cut(s) | 211, 665, 755, 2493 |
| BstSFI | CTRYAG | 2 cut(s) | 1157, 2444 |
| BstUI | CGCG | 1 cut(s) | 637 |
| BstV1I | GCAGC | 5 cut(s) | 257, 1568, 2142, 2360, 2363 |
| BstV2I | GAAGAC | 3 cut(s) | 987, 1676, 2661 |
| BstX2I | RGATCY | 4 cut(s) | 23, 305, 877, 1938 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 529 |
| BstYI | RGATCY | 4 cut(s) | 23, 305, 877, 1938 |
| Bsu15I | ATCGAT | 1 cut(s) | 1967 |
| Bsu36I | CCTNAGG | 1 cut(s) | 150 |
| BsuI | GTATCC | 1 cut(s) | 2523 |
| BsuRI | GGCC | 7 cut(s) | 128, 351, 445, 1473, 1796, 2031, 2177 |
| BsuTUI | ATCGAT | 1 cut(s) | 1967 |
| BtsCI | GGATG | 6 cut(s) | 518, 713, 913, 994, 1578, 2467 |
| BtsI | GCAGTG | 1 cut(s) | 1888 |
| BtsIMutI | CAGTG | 1 cut(s) | 1888 |
| BveI | ACCTGC | 1 cut(s) | 1661 |
| CaiI | CAGNNNCTG | 2 cut(s) | 723, 2354 |
| CfoI | GCGC | 1 cut(s) | 1167 |
| Cfr10I | RCCGGY | 2 cut(s) | 228, 1869 |
| Cfr13I | GGNCC | 3 cut(s) | 532, 1471, 2434 |
| ClaI | ATCGAT | 1 cut(s) | 1967 |
| Csp6I | GTAC | 1 cut(s) | 1084 |
| CspAI | ACCGGT | 1 cut(s) | 1869 |
| CviQI | GTAC | 1 cut(s) | 1084 |
| DpnI | GATC | 9 cut(s) | 25, 307, 874, 879, 1119, 1940, 1970, 2229, 2681 |
| DpnII | GATC | 9 cut(s) | 23, 305, 872, 877, 1117, 1938, 1968, 2227, 2679 |
| DraI | TTTAAA | 2 cut(s) | 960, 1518 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1294 |
| EaeI | YGGCCR | 2 cut(s) | 126, 349 |
| Eam1104I | CTCTTC | 5 cut(s) | 17, 292, 1332, 1590, 2185 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1294 |
| EarI | CTCTTC | 5 cut(s) | 17, 292, 1332, 1590, 2185 |
| Ecl136II | GAGCTC | 3 cut(s) | 492, 641, 1983 |
| Eco24I | GRGCYC | 4 cut(s) | 494, 643, 673, 1985 |
| Eco31I | GGTCTC | 1 cut(s) | 2223 |
| Eco32I | GATATC | 1 cut(s) | 296 |
| Eco47I | GGWCC | 2 cut(s) | 532, 2434 |
| Eco53kI | GAGCTC | 3 cut(s) | 492, 641, 1983 |
| Eco81I | CCTNAGG | 1 cut(s) | 150 |
| EcoICRI | GAGCTC | 3 cut(s) | 492, 641, 1983 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1801 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1471, 2434 |
| EcoRI | GAATTC | 1 cut(s) | 468 |
| EcoRII | CCWGG | 3 cut(s) | 211, 665, 2493 |
| EcoRV | GATATC | 1 cut(s) | 296 |
| EcoT38I | GRGCYC | 4 cut(s) | 494, 643, 673, 1985 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 28, 31, 2328, 2360, 2646, 2678 |
| FaqI | GGGAC | 1 cut(s) | 2718 |
| FauI | CCCGC | 1 cut(s) | 1350 |
| FbaI | TGATCA | 2 cut(s) | 1117, 2227 |
| Fnu4HI | GCNGC | 5 cut(s) | 246, 1557, 2156, 2349, 2352 |
| FokI | GGATG | 6 cut(s) | 505, 700, 920, 1001, 1565, 2474 |
| FriOI | GRGCYC | 4 cut(s) | 494, 643, 673, 1985 |
| Fsp4HI | GCNGC | 5 cut(s) | 246, 1557, 2156, 2349, 2352 |
| FspBI | CTAG | 9 cut(s) | 36, 201, 437, 465, 507, 591, 1241, 1286, 1916 |
| FspI | TGCGCA | 1 cut(s) | 1166 |
| GlaI | GCGC | 1 cut(s) | 1166 |
| GluI | GCNGC | 5 cut(s) | 246, 1557, 2156, 2349, 2352 |
| GsaI | CCCAGC | 1 cut(s) | 1490 |
| GsuI | CTGGAG | 2 cut(s) | 1241, 2477 |
| HaeIII | GGCC | 7 cut(s) | 128, 351, 445, 1473, 1796, 2031, 2177 |
| HapII | CCGG | 4 cut(s) | 229, 380, 757, 1870 |
| HhaI | GCGC | 1 cut(s) | 1167 |
| Hin6I | GCGC | 1 cut(s) | 1165 |
| HinP1I | GCGC | 1 cut(s) | 1165 |
| HincII | GTYRAC | 1 cut(s) | 1299 |
| HindII | GTYRAC | 1 cut(s) | 1299 |
| HindIII | AAGCTT | 3 cut(s) | 919, 1063, 1316 |
| HpaII | CCGG | 4 cut(s) | 229, 380, 757, 1870 |
| HphI | GGTGA | 7 cut(s) | 131, 464, 654, 841, 1712, 2410, 2587 |
| Hpy166II | GTNNAC | 3 cut(s) | 648, 1299, 1932 |
| Hpy8I | GTNNAC | 3 cut(s) | 648, 1299, 1932 |
| HpyCH4III | ACNGT | 7 cut(s) | 476, 536, 795, 956, 1102, 1161, 2518 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1178, 1354, 1375, 1765, 2345 |
| HspAI | GCGC | 1 cut(s) | 1165 |
| Kpn2I | TCCGGA | 1 cut(s) | 379 |
| Ksp22I | TGATCA | 2 cut(s) | 1117, 2227 |
| Kzo9I | GATC | 9 cut(s) | 23, 305, 872, 877, 1117, 1938, 1968, 2227, 2679 |
| LguI | GCTCTTC | 2 cut(s) | 17, 1332 |
| LmnI | GCTCC | 6 cut(s) | 225, 464, 489, 497, 1765, 1988 |
| Lsp1109I | GCAGC | 5 cut(s) | 257, 1568, 2142, 2360, 2363 |
| LweI | GCATC | 3 cut(s) | 1587, 2439, 2507 |
| MaeI | CTAG | 9 cut(s) | 36, 201, 437, 465, 507, 591, 1241, 1286, 1916 |
| MalI | GATC | 9 cut(s) | 25, 307, 874, 879, 1119, 1940, 1970, 2229, 2681 |
| MbiI | CCGCTC | 1 cut(s) | 1357 |
| MboI | GATC | 9 cut(s) | 23, 305, 872, 877, 1117, 1938, 1968, 2227, 2679 |
| MfeI | CAATTG | 2 cut(s) | 946, 1674 |
| MflI | RGATCY | 4 cut(s) | 23, 305, 877, 1938 |
| MhlI | GDGCHC | 4 cut(s) | 494, 643, 673, 1985 |
| MlsI | TGGCCA | 1 cut(s) | 351 |
| MluNI | TGGCCA | 1 cut(s) | 351 |
| MlyI | GAGTC | 3 cut(s) | 364, 967, 1232 |
| MmeI | TCCRAC | 2 cut(s) | 1314, 1791 |
| Mox20I | TGGCCA | 1 cut(s) | 351 |
| MroI | TCCGGA | 1 cut(s) | 379 |
| MroXI | GAANNNNTTC | 3 cut(s) | 11, 137, 1065 |
| MscI | TGGCCA | 1 cut(s) | 351 |
| MslI | CAYNNNNRTG | 3 cut(s) | 906, 989, 2197 |
| Msp20I | TGGCCA | 1 cut(s) | 351 |
| MspA1I | CMGCKG | 3 cut(s) | 416, 1559, 2354 |
| MspCI | CTTAAG | 3 cut(s) | 1313, 1466, 2453 |
| MspI | CCGG | 4 cut(s) | 229, 380, 757, 1870 |
| MspR9I | CCNGG | 4 cut(s) | 213, 667, 757, 2495 |
| MssI | GTTTAAAC | 1 cut(s) | 960 |
| MunI | CAATTG | 2 cut(s) | 946, 1674 |
| MvaI | CCWGG | 3 cut(s) | 213, 667, 2495 |
| MvnI | CGCG | 1 cut(s) | 637 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1178, 1354, 1375, 1765, 2345 |
| NciI | CCSGG | 1 cut(s) | 757 |
| NdeII | GATC | 9 cut(s) | 23, 305, 872, 877, 1117, 1938, 1968, 2227, 2679 |
| NlaIV | GGNNCC | 2 cut(s) | 227, 460 |
| NmeAIII | GCCGAG | 1 cut(s) | 154 |
| NmuCI | GTSAC | 7 cut(s) | 119, 847, 950, 1224, 1308, 2416, 2486 |
| NsbI | TGCGCA | 1 cut(s) | 1166 |
| NspI | RCATGY | 1 cut(s) | 2602 |
| PasI | CCCWGGG | 1 cut(s) | 666 |
| PciI | ACATGT | 1 cut(s) | 2598 |
| PciSI | GCTCTTC | 2 cut(s) | 17, 1332 |
| PdmI | GAANNNNTTC | 3 cut(s) | 11, 137, 1065 |
| PfeI | GAWTC | 9 cut(s) | 479, 624, 749, 1507, 1814, 1835, 2042, 2078, 2738 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 723, 1726 |
| PinAI | ACCGGT | 1 cut(s) | 1869 |
| PkrI | GCNGC | 5 cut(s) | 247, 1558, 2157, 2350, 2353 |
| PleI | GAGTC | 3 cut(s) | 364, 967, 1231 |
| PmeI | GTTTAAAC | 1 cut(s) | 960 |
| PpsI | GAGTC | 3 cut(s) | 364, 967, 1231 |
| PpuMI | RGGWCCY | 1 cut(s) | 2434 |
| PscI | ACATGT | 1 cut(s) | 2598 |
| PshBI | ATTAAT | 2 cut(s) | 2205, 2619 |
| Psp124BI | GAGCTC | 3 cut(s) | 494, 643, 1985 |
| Psp5II | RGGWCCY | 1 cut(s) | 2434 |
| Psp6I | CCWGG | 3 cut(s) | 211, 665, 2493 |
| PspFI | CCCAGC | 1 cut(s) | 1486 |
| PspGI | CCWGG | 3 cut(s) | 211, 665, 2493 |
| PspN4I | GGNNCC | 2 cut(s) | 227, 460 |
| PspPI | GGNCC | 3 cut(s) | 532, 1471, 2434 |
| PspPPI | RGGWCCY | 1 cut(s) | 2434 |
| PstI | CTGCAG | 1 cut(s) | 2448 |
| PstNI | CAGNNNCTG | 2 cut(s) | 723, 2354 |
| PsuI | RGATCY | 4 cut(s) | 23, 305, 877, 1938 |
| PvuII | CAGCTG | 2 cut(s) | 416, 2354 |
| RsaI | GTAC | 1 cut(s) | 1085 |
| RsaNI | GTAC | 1 cut(s) | 1084 |
| RseI | CAYNNNNRTG | 3 cut(s) | 906, 989, 2197 |
| SacI | GAGCTC | 3 cut(s) | 494, 643, 1985 |
| SapI | GCTCTTC | 2 cut(s) | 17, 1332 |
| SatI | GCNGC | 5 cut(s) | 246, 1557, 2156, 2349, 2352 |
| Sau3AI | GATC | 9 cut(s) | 23, 305, 872, 877, 1117, 1938, 1968, 2227, 2679 |
| Sau96I | GGNCC | 3 cut(s) | 532, 1471, 2434 |
| SchI | GAGTC | 3 cut(s) | 364, 967, 1232 |
| ScrFI | CCNGG | 4 cut(s) | 213, 667, 757, 2495 |
| SduI | GDGCHC | 4 cut(s) | 494, 643, 673, 1985 |
| SfaNI | GCATC | 3 cut(s) | 1587, 2439, 2507 |
| SfcI | CTRYAG | 2 cut(s) | 1157, 2444 |
| SinI | GGWCC | 2 cut(s) | 532, 2434 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 906, 989, 2197 |
| SmlI | CTYRAG | 8 cut(s) | 916, 975, 1139, 1313, 1319, 1466, 1798, 2453 |
| SmoI | CTYRAG | 8 cut(s) | 916, 975, 1139, 1313, 1319, 1466, 1798, 2453 |
| SsiI | CCGC | 4 cut(s) | 635, 1357, 1559, 1624 |
| SspMI | CTAG | 9 cut(s) | 36, 201, 437, 465, 507, 591, 1241, 1286, 1916 |
| SstI | GAGCTC | 3 cut(s) | 494, 643, 1985 |
| StyD4I | CCNGG | 4 cut(s) | 211, 665, 755, 2493 |
| TaaI | ACNGT | 7 cut(s) | 476, 536, 795, 956, 1102, 1161, 2518 |
| TaqI | TCGA | 4 cut(s) | 172, 855, 1967, 2649 |
| TfiI | GAWTC | 9 cut(s) | 479, 624, 749, 1507, 1814, 1835, 2042, 2078, 2738 |
| TscAI | CASTG | 1 cut(s) | 1888 |
| TseFI | GTSAC | 7 cut(s) | 119, 847, 950, 1224, 1308, 2416, 2486 |
| TseI | GCWGC | 5 cut(s) | 245, 1556, 2155, 2348, 2351 |
| Tsp45I | GTSAC | 7 cut(s) | 119, 847, 950, 1224, 1308, 2416, 2486 |
| TspDTI | ATGAA | 7 cut(s) | 17, 666, 762, 834, 2102, 2175, 2667 |
| TspGWI | ACGGA | 2 cut(s) | 617, 1951 |
| TspRI | CASTG | 1 cut(s) | 1888 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 723, 1726 |
| Vha464I | CTTAAG | 3 cut(s) | 1313, 1466, 2453 |
| VpaK11BI | GGWCC | 2 cut(s) | 532, 2434 |
| VspI | ATTAAT | 2 cut(s) | 2205, 2619 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1801 |
| XapI | RAATTY | 7 cut(s) | 468, 1450, 1706, 1999, 2009, 2271, 2541 |
| XbaI | TCTAGA | 2 cut(s) | 464, 590 |
| XceI | RCATGY | 1 cut(s) | 2602 |
| XmnI | GAANNNNTTC | 3 cut(s) | 11, 137, 1065 |
| XspI | CTAG | 9 cut(s) | 36, 201, 437, 465, 507, 591, 1241, 1286, 1916 |