Rorug01G0317900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003790
Physical Location & Seq
Forward (+)
43645090 .. 43647070
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0317900.1

Sequence Viewer

Length: 432 bp
ATGGAGCTGAAACCAGGTCTCTCAATTCTCGTCACCGACGGAGCTTCTAGAATTGGGCGCGACGGAACTGAATTCGCTGACGGCGATGTGTTGATTTTCCTGGATATGATCAAATACCGGGGCTTGAAAGAGTCAGATGTTGATAGCTTTGTGGATGATGTTATCGTGAATGATAAACCATGGGCATCTGAAGCACAGGAGGTCTTGACTGGTTCTCACATTTTTGTGTGTGCCCATGGTAGTCGAGATCGTAGATGTGGTGTTTGTGGACCTGTTCTCATTGATAAATTCACAGAGGAGGCTGAATTGCGAGGACTGAAGGATCAGGTGTTTGTTAGTCCATGTTCTCACATTGGGGGCCACAAGTATGCTGGGAACTTGATTATCTACAGCCCTGGTGCCAATGGAAAGATCACTGGTCACTGCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.47

Weight (kDa)

5.27

Isoelectric Point (pI)

26.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Suc_Fer-like PF06999 24 - 137 7.6e-29 Sucrase/ferredoxin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 398
AccII CGCG 1 cut(s) 60
AclWI GGATC 1 cut(s) 330
AcsI RAATTY 2 cut(s) 71, 287
AcuI CTGAAG 2 cut(s) 210, 338
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 3 cut(s) 13, 99, 394
AluBI AGCT 3 cut(s) 7, 44, 147
AluI AGCT 3 cut(s) 7, 44, 147
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 1 cut(s) 330
AoxI GGCC 1 cut(s) 358
ApeKI GCWGC 1 cut(s) 426
ApoI RAATTY 2 cut(s) 71, 287
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 2 cut(s) 269, 358
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 25
AvaII GGWCC 1 cut(s) 269
BaeGI GKGCMC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 398
BbvI GCAGC 1 cut(s) 413
BceAI ACGGC 1 cut(s) 97
BciT130I CCWGG 3 cut(s) 15, 101, 396
BclI TGATCA 1 cut(s) 108
BcnI CCSGG 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 388
BisI GCNGC 1 cut(s) 427
BlsI GCNGC 1 cut(s) 428
Bme1390I CCNGG 4 cut(s) 15, 101, 119, 396
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 2 cut(s) 269, 358
BmiI GGNNCC 2 cut(s) 359, 400
BmrFI CCNGG 4 cut(s) 15, 101, 119, 396
BmsI GCATC 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 119
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 4 cut(s) 118, 179, 235, 394
Bse1I ACTGG 2 cut(s) 214, 421
BseBI CCWGG 3 cut(s) 15, 101, 396
BseDI CCNNGG 4 cut(s) 118, 179, 235, 394
BseGI GGATG 1 cut(s) 160
BseNI ACTGG 2 cut(s) 214, 421
BseRI GAGGAG 1 cut(s) 311
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 1 cut(s) 413
BseYI CCCAGC 1 cut(s) 371
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 360
BshNI GGYRCC 1 cut(s) 398
BsiSI CCGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 23
BsnI GGCC 1 cut(s) 360
Bso31I GGTCTC 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 4 cut(s) 108, 247, 322, 411
Bsp19I CCATGG 2 cut(s) 179, 235
BspANI GGCC 1 cut(s) 360
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 359, 400
BspPI GGATC 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 398
BspTNI GGTCTC 1 cut(s) 23
BsrI ACTGG 2 cut(s) 214, 421
BssECI CCNNGG 4 cut(s) 118, 179, 235, 394
BssMI GATC 4 cut(s) 108, 247, 322, 411
BssT1I CCWWGG 2 cut(s) 179, 235
Bst2UI CCWGG 3 cut(s) 15, 101, 396
BstDSI CCRYGG 2 cut(s) 179, 235
BstF5I GGATG 1 cut(s) 160
BstFNI CGCG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 4 cut(s) 111, 250, 325, 414
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 4 cut(s) 108, 247, 322, 411
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 3 cut(s) 15, 101, 396
BstSCI CCNGG 4 cut(s) 13, 99, 117, 394
BstSFI CTRYAG 1 cut(s) 388
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 413
BsuRI GGCC 1 cut(s) 360
BtgI CCRYGG 2 cut(s) 179, 235
BtgZI GCGATG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 160
BtsI GCAGTG 1 cut(s) 421
BtsIMutI CAGTG 2 cut(s) 414, 421
CfoI GCGC 1 cut(s) 60
Cfr13I GGNCC 2 cut(s) 269, 358
CsiI ACCWGGT 1 cut(s) 13
CviAII CATG 3 cut(s) 180, 236, 342
CviJI RGCY 7 cut(s) 7, 44, 123, 147, 302, 360, 393
CviKI_1 RGCY 7 cut(s) 7, 44, 123, 147, 302, 360, 393
DpnI GATC 4 cut(s) 110, 249, 324, 413
DpnII GATC 4 cut(s) 108, 247, 322, 411
Eco130I CCWWGG 2 cut(s) 179, 235
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 269
Eco57I CTGAAG 2 cut(s) 210, 338
EcoRI GAATTC 1 cut(s) 71
EcoRII CCWGG 3 cut(s) 13, 99, 394
EcoT14I CCWWGG 2 cut(s) 179, 235
ErhI CCWWGG 2 cut(s) 179, 235
FaeI CATG 3 cut(s) 183, 239, 345
FaiI YATR 5 cut(s) 107, 181, 237, 343, 369
FatI CATG 3 cut(s) 179, 235, 341
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 427
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 427
FspBI CTAG 1 cut(s) 48
GlaI GCGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 427
GsaI CCCAGC 1 cut(s) 375
HaeIII GGCC 1 cut(s) 360
HapII CCGG 1 cut(s) 118
HhaI GCGC 1 cut(s) 60
Hin1II CATG 3 cut(s) 183, 239, 345
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HinfI GANTC 1 cut(s) 131
HpaII CCGG 1 cut(s) 118
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 2 cut(s) 136, 190
Hpy188III TCNNGA 4 cut(s) 48, 166, 205, 245
Hpy8I GTNNAC 1 cut(s) 269
Hpy99I CGWCG 2 cut(s) 41, 65
HpyAV CCTTC 1 cut(s) 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
Hsp92II CATG 3 cut(s) 183, 239, 345
HspAI GCGC 1 cut(s) 58
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 4 cut(s) 108, 247, 322, 411
LmnI GCTCC 2 cut(s) 4, 41
Lsp1109I GCAGC 1 cut(s) 413
LweI GCATC 1 cut(s) 194
MabI ACCWGGT 1 cut(s) 13
MaeI CTAG 1 cut(s) 48
MaeIII GTNAC 2 cut(s) 31, 419
MalI GATC 4 cut(s) 110, 249, 324, 413
MboI GATC 4 cut(s) 108, 247, 322, 411
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 5 cut(s) 24, 51, 71, 287, 305
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 4 cut(s) 193, 289, 292, 305
MslI CAYNNNNRTG 2 cut(s) 224, 366
MspI CCGG 1 cut(s) 118
MspR9I CCNGG 4 cut(s) 15, 101, 119, 396
MvaI CCWGG 3 cut(s) 15, 101, 396
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 191
NciI CCSGG 1 cut(s) 119
NcoI CCATGG 2 cut(s) 179, 235
NdeII GATC 4 cut(s) 108, 247, 322, 411
NlaIII CATG 3 cut(s) 183, 239, 345
NlaIV GGNNCC 2 cut(s) 359, 400
NmuCI GTSAC 2 cut(s) 31, 419
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PfoI TCCNGGA 1 cut(s) 99
PkrI GCNGC 1 cut(s) 428
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp6I CCWGG 3 cut(s) 13, 99, 394
PspFI CCCAGC 1 cut(s) 371
PspGI CCWGG 3 cut(s) 13, 99, 394
PspN4I GGNNCC 2 cut(s) 359, 400
PspPI GGNCC 2 cut(s) 269, 358
RseI CAYNNNNRTG 2 cut(s) 224, 366
SatI GCNGC 1 cut(s) 427
Sau3AI GATC 4 cut(s) 108, 247, 322, 411
Sau96I GGNCC 2 cut(s) 269, 358
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 4 cut(s) 15, 101, 119, 396
SduI GDGCHC 1 cut(s) 235
SetI ASST 7 cut(s) 9, 19, 46, 149, 204, 274, 330
SexAI ACCWGGT 1 cut(s) 13
SfaNI GCATC 1 cut(s) 194
SfcI CTRYAG 1 cut(s) 388
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 2 cut(s) 224, 366
Sse9I AATT 5 cut(s) 24, 51, 71, 287, 305
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 4 cut(s) 13, 99, 117, 394
StyI CCWWGG 2 cut(s) 179, 235
TaqI TCGA 1 cut(s) 244
TasI AATT 5 cut(s) 24, 51, 71, 287, 305
TscAI CASTG 2 cut(s) 421, 428
TseFI GTSAC 2 cut(s) 31, 419
TseI GCWGC 1 cut(s) 426
Tsp45I GTSAC 2 cut(s) 31, 419
TspGWI ACGGA 2 cut(s) 54, 78
TspRI CASTG 2 cut(s) 421, 428
VpaK11BI GGWCC 1 cut(s) 269
XapI RAATTY 2 cut(s) 71, 287
XbaI TCTAGA 1 cut(s) 47
XcmI CCANNNNNNNNNTGG 1 cut(s) 368
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.