Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011744

Physical Location & Seq

Genomic Coordinates Forward (+)

25639192 .. 25641672

Gene Structure 2481 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G233200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGACAAAGATGAAATCTTTGAGTAGCGTAGGACTTGGTTTGAGTGTAGTTTTTGGTTGTCTTTTCTTGGCTCTCATTGCTGAGCTTTACTATTTGTTGTGGTGGAAGAAGAGGTTCACCAACAGAGAGATTGAAAATGACTACAGCAGCCCCCAAAAGGAGCTGTTCTACACGTTCTGCTGGAGAAGGAACTCTTCTTTGTGCCACACAGCTCGAGGCCCCAGAGAACTCTGTGCTTCATTGAGAATGACAGAAACCCTTGTCCATGATCCAAATTCTCAGCTTCATATCCACACAAGCAACAATTTGCTGCTCAAACAATTGGAAGAGGATGAGCTGGACGCAGAGCTTATGAGGCTGCAAAACGCTGCAGGCCCTCCAAGACATCTCTTCACAATTGTGGAAGAAACAAAGGAGGACTTAGAATCTGAAGATGGCAAGTCTAGAGGAGATAGGAGCCAAAAGGGGTCAAGAAGTAAGAGTTTGAGTGATTTGCTTGTCACTGTAGAGACACCATATTTGACTCCTTTGGGTTCTCCAACTCTTTTCACACCTCCTCTCACTCCTGCGGTGGATTCTCACAACCAGCATGGATTCAACCCTCTGTTTGAATCAAAAACTGATGCAGAATTCAACAGGTTGAGGTCATCTCCACCTCCCAAGTTCAAGTTCTTGCAGGTAGCTGAGGAGAAACTTAGAATAAAACTAAAGGAAGAGGCTGAAAAGGGTGTTCATAAGATTGATGGTCAAGTTCCAGAGAAAGGAAATAAAGCTCCTCCCATTTCAAGGTTCCTTAAAGATGAGGAAGATGGTTCTTTTATCACAATAATTGTTGACAAAAACAAAGAAAGGGAGCTTACTCATCACCATCTCCAGCTACCACAATACCATTCAAGCACTTCTCAGGTTCTTCCCCTTGCTTCTTCACCTTCAGCATTCAGATCACCAATTAACAAGAAGCCCACTTTACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

325

Amino Acids

36.85

Weight (kDa)

7.75

Isoelectric Point (pI)

60.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39560
fragaria_vesca	FvH4_7g22100
prunus_persica	Prupe.2G233200_v2.0.a1
pyrus_communis	pycom01g15200 pycom07g18430
rosa_chinensis	RchiOBHm_Chr1g0366491
rosa_laevigata	RLG00000027343
rosa_multiflora	Rmu_sc0012047.1_g000001 Rmu_ssc0000192.1_g000002 Rmu_ssc0000250.1_g000020
rosa_roxburghii	Rroxscaffold_4G00289880 Rroxscaffold_4G00290140
rosa_rugosa	Rorug01G0330400
rosa_samantha	Rh1AG338300 Rh1BG299800 Rh1CG314900 Rh1DG331600 Rh2AG519400
rosa_wichuraiana	Rw1G029950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	667
AciI	CCGC	1 cut(s)	569
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	2 cut(s)	274, 629
AcuI	CTGAAG	2 cut(s)	450, 915
AfiI	CCNNNNNNNGG	3 cut(s)	157, 761, 786
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	7 cut(s)	134, 598, 611, 634, 667, 786, 894
AjuI	GAANNNNNNNTTGG	2 cut(s)	653, 685
AleI	CACNNNNGTG	1 cut(s)	398
Alw26I	GTCTC	1 cut(s)	503
AlwI	GGATC	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	2 cut(s)	217, 373
ApeKI	GCWGC	4 cut(s)	147, 310, 358, 368
ApoI	RAATTY	2 cut(s)	274, 629
ArsI	GACNNNNNNTTYG	2 cut(s)	502, 534
Asp700I	GAANNNNTTC	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	218, 374
AsuHPI	GGTGA	4 cut(s)	109, 857, 918, 936
AvaI	CYCGRG	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	684
BbvI	GCAGC	4 cut(s)	159, 297, 345, 355
BccI	CCATC	4 cut(s)	428, 737, 803, 876
BcoDI	GTCTC	1 cut(s)	503
BfaI	CTAG	1 cut(s)	444
BfmI	CTRYAG	3 cut(s)	142, 369, 504
BfuAI	ACCTGC	1 cut(s)	667
BisI	GCNGC	4 cut(s)	148, 311, 359, 369
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	4 cut(s)	149, 312, 360, 370
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	2 cut(s)	218, 374
BmiI	GGNNCC	3 cut(s)	220, 458, 791
BmsI	GCATC	1 cut(s)	613
BplI	GAGNNNNNCTC	2 cut(s)	634, 666
BpmI	CTGGAG	2 cut(s)	202, 857
Bpu10I	CCTNAGC	1 cut(s)	684
Bpu1102I	GCTNAGC	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 761, 786
Bse3DI	GCAATG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	3 cut(s)	157, 761, 786
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	4 cut(s)	72, 293, 675, 917
BseRI	GAGGAG	4 cut(s)	462, 546, 701, 765
BseXI	GCAGC	4 cut(s)	159, 297, 345, 355
BshFI	GGCC	2 cut(s)	219, 375
BsiHKCI	CYCGRG	1 cut(s)	213
BslI	CCNNNNNNNGG	3 cut(s)	157, 761, 786
BsmAI	GTCTC	1 cut(s)	503
BsmI	GAATGC	1 cut(s)	935
BsnI	GGCC	2 cut(s)	219, 375
BsoBI	CYCGRG	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	268, 941
Bsp1720I	GCTNAGC	1 cut(s)	81
BspACI	CCGC	1 cut(s)	569
BspANI	GGCC	2 cut(s)	219, 375
BspCNI	CTCAG	4 cut(s)	73, 292, 676, 916
BspLI	GGNNCC	3 cut(s)	220, 458, 791
BspMAI	CTGCAG	1 cut(s)	373
BspMI	ACCTGC	1 cut(s)	667
BspPI	GGATC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	75
BssMI	GATC	2 cut(s)	268, 941
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	5 cut(s)	104, 199, 321, 395, 708
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	6 cut(s)	81, 279, 421, 684, 695, 903
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	2 cut(s)	271, 944
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	2 cut(s)	268, 941
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 355
BstSFI	CTRYAG	3 cut(s)	142, 369, 504
BstV1I	GCAGC	4 cut(s)	159, 297, 345, 355
BsuRI	GGCC	2 cut(s)	219, 375
BtsCI	GGATG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	501
BveI	ACCTGC	1 cut(s)	667
Cac8I	GCNNGC	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	218, 374
CseI	GACGC	1 cut(s)	350
CviAII	CATG	2 cut(s)	266, 590
DdeI	CTNAG	6 cut(s)	81, 279, 421, 684, 695, 903
DpnI	GATC	2 cut(s)	270, 943
DpnII	GATC	2 cut(s)	268, 941
Eam1104I	CTCTTC	5 cut(s)	104, 199, 321, 395, 708
EarI	CTCTTC	5 cut(s)	104, 199, 321, 395, 708
Eco57I	CTGAAG	2 cut(s)	450, 915
Eco88I	CYCGRG	1 cut(s)	213
EcoO109I	RGGNCCY	2 cut(s)	218, 374
EcoRI	GAATTC	1 cut(s)	629
FaeI	CATG	2 cut(s)	269, 593
FaiI	YATR	6 cut(s)	267, 288, 353, 517, 591, 735
FalI	AAGNNNNNCTT	4 cut(s)	178, 210, 404, 436
FatI	CATG	2 cut(s)	265, 589
Fnu4HI	GCNGC	4 cut(s)	148, 311, 359, 369
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	4 cut(s)	148, 311, 359, 369
FspBI	CTAG	1 cut(s)	444
GluI	GCNGC	4 cut(s)	148, 311, 359, 369
GsuI	CTGGAG	2 cut(s)	202, 857
HaeIII	GGCC	2 cut(s)	219, 375
HgaI	GACGC	1 cut(s)	350
Hin1II	CATG	2 cut(s)	269, 593
HincII	GTYRAC	1 cut(s)	835
HindII	GTYRAC	1 cut(s)	835
HinfI	GANTC	5 cut(s)	425, 523, 575, 594, 611
HphI	GGTGA	4 cut(s)	109, 857, 918, 936
Hpy166II	GTNNAC	2 cut(s)	117, 835
Hpy188I	TCNGA	2 cut(s)	430, 941
Hpy188III	TCNNGA	3 cut(s)	444, 471, 755
Hpy8I	GTNNAC	2 cut(s)	117, 835
HpyAV	CCTTC	2 cut(s)	180, 939
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	4 cut(s)	361, 371, 626, 676
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 355
HpyF3I	CTNAG	6 cut(s)	81, 279, 421, 684, 695, 903
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	269, 593
Kzo9I	GATC	2 cut(s)	268, 941
LmnI	GCTCC	4 cut(s)	160, 456, 778, 853
Lsp1109I	GCAGC	4 cut(s)	159, 297, 345, 355
LweI	GCATC	1 cut(s)	613
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	2 cut(s)	270, 943
MboI	GATC	2 cut(s)	268, 941
MfeI	CAATTG	2 cut(s)	320, 396
MluCI	AATT	7 cut(s)	274, 304, 320, 396, 629, 828, 948
MlyI	GAGTC	1 cut(s)	517
MmeI	TCCRAC	1 cut(s)	563
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	2 cut(s)	795, 951
MslI	CAYNNNNRTG	1 cut(s)	398
MunI	CAATTG	2 cut(s)	320, 396
Mva1269I	GAATGC	1 cut(s)	935
MwoI	GCNNNNNNNGC	2 cut(s)	77, 355
NdeII	GATC	2 cut(s)	268, 941
NlaIII	CATG	2 cut(s)	269, 593
NlaIV	GGNNCC	3 cut(s)	220, 458, 791
NmuCI	GTSAC	1 cut(s)	499
OliI	CACNNNNGTG	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	213
PctI	GAATGC	1 cut(s)	935
PdmI	GAANNNNTTC	1 cut(s)	113
PfeI	GAWTC	4 cut(s)	425, 575, 594, 611
PkrI	GCNGC	4 cut(s)	149, 312, 360, 370
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PspN4I	GGNNCC	3 cut(s)	220, 458, 791
PspPI	GGNCC	2 cut(s)	218, 374
PspXI	VCTCGAGB	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	373
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	2 cut(s)	795, 951
SatI	GCNGC	4 cut(s)	148, 311, 359, 369
Sau3AI	GATC	2 cut(s)	268, 941
Sau96I	GGNCC	2 cut(s)	218, 374
SchI	GAGTC	1 cut(s)	517
SfaNI	GCATC	1 cut(s)	613
SfcI	CTRYAG	3 cut(s)	142, 369, 504
Sfr274I	CTCGAG	1 cut(s)	213
SlaI	CTCGAG	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	7 cut(s)	274, 304, 320, 396, 629, 828, 948
SsiI	CCGC	1 cut(s)	569
SspMI	CTAG	1 cut(s)	444
TaaI	ACNGT	1 cut(s)	505
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	1 cut(s)	214
TasI	AATT	7 cut(s)	274, 304, 320, 396, 629, 828, 948
TfiI	GAWTC	4 cut(s)	425, 575, 594, 611
Tru1I	TTAA	2 cut(s)	795, 951
Tru9I	TTAA	2 cut(s)	795, 951
TscAI	CASTG	1 cut(s)	508
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	4 cut(s)	147, 310, 358, 368
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	4 cut(s)	26, 228, 275, 722
TspRI	CASTG	1 cut(s)	508
XapI	RAATTY	2 cut(s)	274, 629
XbaI	TCTAGA	1 cut(s)	443
XhoI	CTCGAG	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.