Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011744

Physical Location & Seq

Genomic Coordinates Forward (+)

20867576 .. 20868418

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g18430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGACAAAGATGAAATCTTTGAGCAGTGTGGGACTTGGGTTAAGTGTGGTTTTTGGCTGCCTTTTCTTGGCTCTGATTGCAGAGCTTTACTATTTACTGTGGTGGAAGAAGAGATTTACCAGCAGAGAGATTGACAGTGGCTACAGCAGCAGCCCACAGAAGGAAATCTTCTACATGTTCTGCTGGAGAAGAAGCACTTGCACTTCCTCCCGAAACCCCACAGGTATCTGTGCTTCTTTGAGAATGTCAGAAACCCTAGTCCATGAACCAAGCAGCAACAATCTGGTGCTCAAATCATTTGAGGAGGATGATTTGGATGCTGAGCTCATGAGGCTGCAGAATGCTGGTGGGGGCCCACCAAGGCACCTGTTCACAATTGTGGAGGAAACGAAGGAGGATTTGGAGCAACAGTCAGAGGATGGCGGGTGGAGGAGCCAGAAGGGTTCTAGGAGCAAGAGTCTTAGTGATTTGCTTGTGGGATTTGAGACTCCATATCTGACACCTCTTGGTTCTCCAACACTTTTCACACCTCCTCTCACTCCCCCGCAGGGTTTCAGCCCACTCTTTGAGTCAAAATCTGATGCAGAATTCAACAGATTGAGGTCCTCTCCTCCTCCAAAATTCAAGTTCTTGCAGGTTGCCGAGGAGAAACTTAGAGTAAAATTGCAGGAAAAAGTTCAGAATATTGATGGAAATGCTGAGGAAGATGGTTCTTTCATCACAATCATTGTTGACAAGAACAACGAAAAGTGCCATTCATCAAGCACTTCACAGGTTCTTCCTTTAGTTTCTTCACCTTCAGGATTCAGATCAACAATTGGGAAGAAACCCAATTTACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

31.33

Weight (kDa)

6.91

Isoelectric Point (pI)

74.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39560
fragaria_vesca	FvH4_7g22100
prunus_persica	Prupe.2G233200_v2.0.a1
pyrus_communis	pycom01g15200 pycom07g18430
rosa_chinensis	RchiOBHm_Chr1g0366491
rosa_laevigata	RLG00000027343
rosa_multiflora	Rmu_sc0012047.1_g000001 Rmu_ssc0000192.1_g000002 Rmu_ssc0000250.1_g000020
rosa_roxburghii	Rroxscaffold_4G00289880 Rroxscaffold_4G00290140
rosa_rugosa	Rorug01G0330400
rosa_samantha	Rh1AG338300 Rh1BG299800 Rh1CG314900 Rh1DG331600 Rh2AG519400
rosa_wichuraiana	Rw1G029950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	625
AccB1I	GGYRCC	1 cut(s)	363
AciI	CCGC	2 cut(s)	423, 545
AcsI	RAATTY	2 cut(s)	587, 620
AcuI	CTGAAG	1 cut(s)	783
AfiI	CCNNNNNNNGG	3 cut(s)	67, 160, 548
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	592, 625
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AleI	CACNNNNGTG	1 cut(s)	377
AluBI	AGCT	2 cut(s)	85, 325
AluI	AGCT	2 cut(s)	85, 325
Alw21I	GWGCWC	2 cut(s)	291, 327
Alw26I	GTCTC	1 cut(s)	479
AoxI	GGCC	1 cut(s)	352
ApaI	GGGCCC	1 cut(s)	356
ApeKI	GCWGC	5 cut(s)	57, 147, 150, 273, 334
ApoI	RAATTY	2 cut(s)	587, 620
Asp700I	GAANNNNTTC	1 cut(s)	675
AspS9I	GGNCC	3 cut(s)	352, 353, 603
AsuHPI	GGTGA	1 cut(s)	786
AvaII	GGWCC	1 cut(s)	603
BaeGI	GKGCMC	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	363
BanII	GRGCYC	2 cut(s)	327, 356
BarI	GAAGNNNNNNTAC	2 cut(s)	217, 249
Bbv12I	GWGCWC	2 cut(s)	291, 327
BbvCI	CCTCAGC	1 cut(s)	699
BbvI	GCAGC	5 cut(s)	44, 159, 162, 285, 321
BccI	CCATC	3 cut(s)	413, 683, 701
BcoDI	GTCTC	1 cut(s)	479
BfaI	CTAG	2 cut(s)	257, 447
BfmI	CTRYAG	2 cut(s)	142, 335
BfuAI	ACCTGC	1 cut(s)	625
BisI	GCNGC	5 cut(s)	58, 148, 151, 274, 335
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	5 cut(s)	59, 149, 152, 275, 336
Bme18I	GGWCC	1 cut(s)	603
BmgT120I	GGNCC	3 cut(s)	352, 353, 603
BmiI	GGNNCC	4 cut(s)	353, 354, 365, 434
BmsI	GCATC	2 cut(s)	307, 571
BplI	GAGNNNNNCTC	2 cut(s)	592, 624
BpmI	CTGGAG	1 cut(s)	205
Bpu10I	CCTNAGC	1 cut(s)	699
Bpu1102I	GCTNAGC	1 cut(s)	321
BsaBI	GATNNNNATC	1 cut(s)	808
BsaJI	CCNNGG	2 cut(s)	359, 642
BsaXI	ACNNNNNCTCC	4 cut(s)	395, 425, 442, 472
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 160, 548
Bse8I	GATNNNNATC	1 cut(s)	808
BseDI	CCNNGG	2 cut(s)	359, 642
BseGI	GGATG	3 cut(s)	313, 322, 424
BseJI	GATNNNNATC	1 cut(s)	808
BseLI	CCNNNNNNNGG	3 cut(s)	67, 160, 548
BseMII	CTCAG	2 cut(s)	312, 690
BseRI	GAGGAG	6 cut(s)	317, 445, 522, 600, 603, 659
BseSI	GKGCMC	1 cut(s)	356
BseXI	GCAGC	5 cut(s)	44, 159, 162, 285, 321
BshFI	GGCC	1 cut(s)	354
BshNI	GGYRCC	1 cut(s)	363
BsiHKAI	GWGCWC	2 cut(s)	291, 327
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	3 cut(s)	67, 160, 548
BsmAI	GTCTC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	354
Bsp120I	GGGCCC	1 cut(s)	352
Bsp1286I	GDGCHC	3 cut(s)	291, 327, 356
Bsp143I	GATC	1 cut(s)	809
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	2 cut(s)	423, 545
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	2 cut(s)	313, 691
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	4 cut(s)	353, 354, 365, 434
BspMAI	CTGCAG	1 cut(s)	339
BspMI	ACCTGC	1 cut(s)	625
BspT107I	GGYRCC	1 cut(s)	363
BssECI	CCNNGG	2 cut(s)	359, 642
BssMI	GATC	1 cut(s)	809
BssT1I	CCWWGG	1 cut(s)	359
Bst4CI	ACNGT	3 cut(s)	99, 137, 411
Bst6I	CTCTTC	1 cut(s)	104
BstDEI	CTNAG	4 cut(s)	321, 461, 653, 699
BstF5I	GGATG	3 cut(s)	313, 322, 424
BstKTI	GATC	1 cut(s)	812
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	1 cut(s)	809
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 147, 331
BstNSI	RCATGY	1 cut(s)	178
BstSFI	CTRYAG	2 cut(s)	142, 335
BstSLI	GKGCMC	1 cut(s)	356
BstV1I	GCAGC	5 cut(s)	44, 159, 162, 285, 321
BsuRI	GGCC	1 cut(s)	354
BtsCI	GGATG	3 cut(s)	313, 322, 424
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	31, 142
BveI	ACCTGC	1 cut(s)	625
CciI	TCATGA	1 cut(s)	327
Cfr13I	GGNCC	3 cut(s)	352, 353, 603
CviAII	CATG	3 cut(s)	175, 263, 328
DdeI	CTNAG	4 cut(s)	321, 461, 653, 699
DpnI	GATC	1 cut(s)	811
DpnII	GATC	1 cut(s)	809
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	359
Eco24I	GRGCYC	2 cut(s)	327, 356
Eco47I	GGWCC	1 cut(s)	603
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	783
EcoICRI	GAGCTC	1 cut(s)	325
EcoO109I	RGGNCCY	2 cut(s)	352, 603
EcoRI	GAATTC	1 cut(s)	587
EcoT14I	CCWWGG	1 cut(s)	359
EcoT38I	GRGCYC	2 cut(s)	327, 356
ErhI	CCWWGG	1 cut(s)	359
FaeI	CATG	3 cut(s)	178, 266, 331
FaiI	YATR	4 cut(s)	176, 264, 329, 493
FalI	AAGNNNNNCTT	4 cut(s)	152, 184, 181, 213
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	3 cut(s)	174, 262, 327
FauI	CCCGC	2 cut(s)	416, 552
Fnu4HI	GCNGC	5 cut(s)	58, 148, 151, 274, 335
FokI	GGATG	3 cut(s)	320, 329, 431
FriOI	GRGCYC	2 cut(s)	327, 356
Fsp4HI	GCNGC	5 cut(s)	58, 148, 151, 274, 335
FspBI	CTAG	2 cut(s)	257, 447
GluI	GCNGC	5 cut(s)	58, 148, 151, 274, 335
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	354
Hin1II	CATG	3 cut(s)	178, 266, 331
HincII	GTYRAC	1 cut(s)	733
HindII	GTYRAC	1 cut(s)	733
HinfI	GANTC	4 cut(s)	457, 487, 569, 804
HphI	GGTGA	1 cut(s)	786
Hpy166II	GTNNAC	2 cut(s)	372, 733
Hpy188I	TCNGA	7 cut(s)	75, 250, 415, 498, 580, 681, 809
Hpy188III	TCNNGA	3 cut(s)	210, 328, 801
Hpy8I	GTNNAC	2 cut(s)	372, 733
HpyAV	CCTTC	4 cut(s)	154, 385, 433, 807
HpyCH4III	ACNGT	3 cut(s)	99, 137, 411
HpyCH4V	TGCA	6 cut(s)	80, 201, 337, 584, 634, 667
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 147, 331
HpyF3I	CTNAG	4 cut(s)	321, 461, 653, 699
Hsp92II	CATG	3 cut(s)	178, 266, 331
Kzo9I	GATC	1 cut(s)	809
LmnI	GCTCC	3 cut(s)	403, 432, 450
Lsp1109I	GCAGC	5 cut(s)	44, 159, 162, 285, 321
LweI	GCATC	2 cut(s)	307, 571
MaeI	CTAG	2 cut(s)	257, 447
MalI	GATC	1 cut(s)	811
MboI	GATC	1 cut(s)	809
MboII	GAAGA	8 cut(s)	118, 121, 160, 201, 716, 770, 783, 835
MfeI	CAATTG	2 cut(s)	375, 816
MhlI	GDGCHC	3 cut(s)	291, 327, 356
MluCI	AATT	6 cut(s)	375, 587, 620, 662, 816, 832
MlyI	GAGTC	3 cut(s)	466, 481, 578
MmeI	TCCRAC	1 cut(s)	539
MroXI	GAANNNNTTC	1 cut(s)	675
MseI	TTAA	1 cut(s)	41
MslI	CAYNNNNRTG	1 cut(s)	377
MunI	CAATTG	2 cut(s)	375, 816
Mva1269I	GAATGC	1 cut(s)	346
MwoI	GCNNNNNNNGC	3 cut(s)	77, 147, 331
NdeII	GATC	1 cut(s)	809
NlaIII	CATG	3 cut(s)	178, 266, 331
NlaIV	GGNNCC	4 cut(s)	353, 354, 365, 434
NmeAIII	GCCGAG	1 cut(s)	667
NspI	RCATGY	1 cut(s)	178
OliI	CACNNNNGTG	1 cut(s)	377
PagI	TCATGA	1 cut(s)	327
PciI	ACATGT	1 cut(s)	174
PctI	GAATGC	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	675
PfeI	GAWTC	1 cut(s)	804
PkrI	GCNGC	5 cut(s)	59, 149, 152, 275, 336
PleI	GAGTC	3 cut(s)	465, 481, 577
PpsI	GAGTC	3 cut(s)	465, 481, 577
PpuMI	RGGWCCY	1 cut(s)	603
PscI	ACATGT	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	327
Psp5II	RGGWCCY	1 cut(s)	603
PspN4I	GGNNCC	4 cut(s)	353, 354, 365, 434
PspOMI	GGGCCC	1 cut(s)	352
PspPI	GGNCC	3 cut(s)	352, 353, 603
PspPPI	RGGWCCY	1 cut(s)	603
PstI	CTGCAG	1 cut(s)	339
RseI	CAYNNNNRTG	1 cut(s)	377
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	5 cut(s)	58, 148, 151, 274, 335
Sau3AI	GATC	1 cut(s)	809
Sau96I	GGNCC	3 cut(s)	352, 353, 603
SchI	GAGTC	3 cut(s)	466, 481, 578
SduI	GDGCHC	3 cut(s)	291, 327, 356
SfaNI	GCATC	2 cut(s)	307, 571
SfcI	CTRYAG	2 cut(s)	142, 335
SinI	GGWCC	1 cut(s)	603
SmiMI	CAYNNNNRTG	1 cut(s)	377
Sse9I	AATT	6 cut(s)	375, 587, 620, 662, 816, 832
SsiI	CCGC	2 cut(s)	423, 545
SspI	AATATT	1 cut(s)	685
SspMI	CTAG	2 cut(s)	257, 447
SstI	GAGCTC	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	359
TaaI	ACNGT	3 cut(s)	99, 137, 411
TasI	AATT	6 cut(s)	375, 587, 620, 662, 816, 832
TfiI	GAWTC	1 cut(s)	804
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	2 cut(s)	31, 142
TseI	GCWGC	5 cut(s)	57, 147, 150, 273, 334
TspDTI	ATGAA	4 cut(s)	26, 279, 706, 747
TspRI	CASTG	2 cut(s)	31, 142
VpaK11BI	GGWCC	1 cut(s)	603
XapI	RAATTY	2 cut(s)	587, 620
XceI	RCATGY	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	2 cut(s)	257, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.