Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0011744

Physical Location & Seq

Genomic Coordinates Forward (+)

15141256 .. 15142077

Gene Structure 822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g15200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGACAAAGATGAAATCTTTGAGCAGTGTGGGACTTGGGTTAAGTGTGGTTTTTGGATGCCTTTTCTTAGCTCTGATTGCAGAGCTTTACTATTTACTGTGGTGGAAGAAGAGGTTTACCAACAGAGAGATTGACAATGGCTACAGCAGCAGCCCACAGAAGGAAATCTTCTACATGTTCTGCTGGAGAAGAAGCACTTGCACTTCCTCTCAAAACCCCACAGATATCTGTGCCTCATTGAGAATGTCAGAAACCCTTGTCCATGAGCCATGCAACAGCAACAATCTGGTGCGCAAATCGTATGAGGAGGATGATTTGGATGCTGAGCTCATGAGGCTGCAGAATTCTGGTGGGGGCCCCCCAAGGCATCTATTCACAATTGTGGAGGAAACAAGGGAGGATTTGGAGCAACAGTCAGAGGATGGTGGGGGGAGGAGCCAGAAGGGTTCTAGGAGTAAGAGTCTGAGTGATTTGCTTGTGGGATTTGAGACTCCATATCTGACACCTCTTGGTTCTCCAACACTTTTCACACCTCCTCTCACTCCTCAGCAGGGATTCAACCCACACTTTGAGTCAAAAACTGATGCAGAATTCAACAGGCTGAGGTCCTCTCCTCCTCCAAAATTCAAGTTCTTGCAGATGGCTGAGGAGAAACTTAGAGCAAAGTTGAAGGAAGAAGCTCAGAAAACTGATGGAAATGTTGAGGAAGATGGTTCTTTTATCACAATAATTATTGACAAGAACAAAGAAGAGTGCCATTCATCAAGCACTTCACAGGTTCTTCCCAGATCAACAATTGGGAGGAAACCCAATTTACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

274

Amino Acids

30.9

Weight (kDa)

6.26

Isoelectric Point (pI)

70.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39560
fragaria_vesca	FvH4_7g22100
prunus_persica	Prupe.2G233200_v2.0.a1
pyrus_communis	pycom01g15200 pycom07g18430
rosa_chinensis	RchiOBHm_Chr1g0366491
rosa_laevigata	RLG00000027343
rosa_multiflora	Rmu_sc0012047.1_g000001 Rmu_ssc0000192.1_g000002 Rmu_ssc0000250.1_g000020
rosa_roxburghii	Rroxscaffold_4G00289880 Rroxscaffold_4G00290140
rosa_rugosa	Rorug01G0330400
rosa_samantha	Rh1AG338300 Rh1BG299800 Rh1CG314900 Rh1DG331600 Rh2AG519400
rosa_wichuraiana	Rw1G029950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	293
AcsI	RAATTY	3 cut(s)	343, 590, 623
AfiI	CCNNNNNNNGG	2 cut(s)	160, 551
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	4 cut(s)	559, 595, 628, 670
AleI	CACNNNNGTG	1 cut(s)	380
AluBI	AGCT	4 cut(s)	71, 85, 328, 680
AluI	AGCT	4 cut(s)	71, 85, 328, 680
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	482
AoxI	GGCC	1 cut(s)	355
ApaI	GGGCCC	1 cut(s)	359
ApeKI	GCWGC	3 cut(s)	147, 150, 337
ApoI	RAATTY	3 cut(s)	343, 590, 623
AspLEI	GCGC	1 cut(s)	294
AspS9I	GGNCC	3 cut(s)	355, 356, 606
AvaII	GGWCC	1 cut(s)	606
BaeGI	GKGCMC	1 cut(s)	359
BanII	GRGCYC	2 cut(s)	330, 359
Bbv12I	GWGCWC	1 cut(s)	330
BbvCI	CCTCAGC	3 cut(s)	546, 602, 645
BbvI	GCAGC	3 cut(s)	159, 162, 324
BccI	CCATC	4 cut(s)	416, 634, 686, 704
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	1 cut(s)	450
BfmI	CTRYAG	2 cut(s)	142, 338
BisI	GCNGC	3 cut(s)	148, 151, 338
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	3 cut(s)	149, 152, 339
Bme18I	GGWCC	1 cut(s)	606
BmgT120I	GGNCC	3 cut(s)	355, 356, 606
BmiI	GGNNCC	4 cut(s)	356, 357, 358, 437
BmsI	GCATC	4 cut(s)	47, 310, 376, 574
BplI	GAGNNNNNCTC	2 cut(s)	595, 627
BpmI	CTGGAG	1 cut(s)	205
Bpu10I	CCTNAGC	3 cut(s)	546, 602, 645
Bpu1102I	GCTNAGC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	362
BsaXI	ACNNNNNCTCC	4 cut(s)	398, 428, 445, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 551
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	4 cut(s)	62, 316, 325, 427
BseLI	CCNNNNNNNGG	2 cut(s)	160, 551
BseMII	CTCAG	6 cut(s)	315, 455, 560, 593, 636, 695
BseRI	GAGGAG	7 cut(s)	320, 448, 525, 534, 603, 606, 662
BseSI	GKGCMC	1 cut(s)	359
BseXI	GCAGC	3 cut(s)	159, 162, 324
BshFI	GGCC	1 cut(s)	357
BsiHKAI	GWGCWC	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	2 cut(s)	160, 551
BsmAI	GTCTC	1 cut(s)	482
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	357
Bsp120I	GGGCCC	1 cut(s)	355
Bsp1286I	GDGCHC	2 cut(s)	330, 359
Bsp143I	GATC	1 cut(s)	788
Bsp1720I	GCTNAGC	1 cut(s)	324
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	6 cut(s)	316, 456, 559, 594, 637, 694
BspHI	TCATGA	1 cut(s)	330
BspLI	GGNNCC	4 cut(s)	356, 357, 358, 437
BspMAI	CTGCAG	1 cut(s)	342
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	1 cut(s)	788
BssT1I	CCWWGG	1 cut(s)	362
Bst4CI	ACNGT	2 cut(s)	99, 414
Bst6I	CTCTTC	2 cut(s)	104, 744
BstDEI	CTNAG	8 cut(s)	67, 324, 464, 546, 602, 645, 656, 681
BstF5I	GGATG	4 cut(s)	62, 316, 325, 427
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	1 cut(s)	791
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	1 cut(s)	788
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 147, 334
BstNSI	RCATGY	1 cut(s)	178
BstSFI	CTRYAG	2 cut(s)	142, 338
BstSLI	GKGCMC	1 cut(s)	359
BstV1I	GCAGC	3 cut(s)	159, 162, 324
BsuRI	GGCC	1 cut(s)	357
BtsCI	GGATG	4 cut(s)	62, 316, 325, 427
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	31
CciI	TCATGA	1 cut(s)	330
CfoI	GCGC	1 cut(s)	294
Cfr13I	GGNCC	3 cut(s)	355, 356, 606
CviAII	CATG	4 cut(s)	175, 263, 270, 331
DdeI	CTNAG	8 cut(s)	67, 324, 464, 546, 602, 645, 656, 681
DpnI	GATC	1 cut(s)	790
DpnII	GATC	1 cut(s)	788
Eam1104I	CTCTTC	2 cut(s)	104, 744
EarI	CTCTTC	2 cut(s)	104, 744
Ecl136II	GAGCTC	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	362
Eco24I	GRGCYC	2 cut(s)	330, 359
Eco32I	GATATC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	606
Eco53kI	GAGCTC	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	328
EcoO109I	RGGNCCY	3 cut(s)	355, 356, 606
EcoRI	GAATTC	2 cut(s)	343, 590
EcoRV	GATATC	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	362
EcoT38I	GRGCYC	2 cut(s)	330, 359
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	4 cut(s)	178, 266, 273, 334
FaiI	YATR	6 cut(s)	176, 264, 271, 303, 332, 496
FalI	AAGNNNNNCTT	4 cut(s)	152, 184, 181, 213
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	4 cut(s)	174, 262, 269, 330
Fnu4HI	GCNGC	3 cut(s)	148, 151, 338
FokI	GGATG	4 cut(s)	69, 323, 332, 434
FriOI	GRGCYC	2 cut(s)	330, 359
Fsp4HI	GCNGC	3 cut(s)	148, 151, 338
FspBI	CTAG	1 cut(s)	450
FspI	TGCGCA	1 cut(s)	293
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	3 cut(s)	148, 151, 338
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	357
HhaI	GCGC	1 cut(s)	294
Hin1II	CATG	4 cut(s)	178, 266, 273, 334
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HinfI	GANTC	4 cut(s)	460, 490, 555, 572
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	6 cut(s)	75, 250, 418, 465, 501, 684
Hpy188III	TCNNGA	1 cut(s)	331
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	3 cut(s)	154, 436, 664
HpyCH4III	ACNGT	2 cut(s)	99, 414
HpyCH4V	TGCA	6 cut(s)	80, 201, 273, 340, 587, 637
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 147, 334
HpyF3I	CTNAG	8 cut(s)	67, 324, 464, 546, 602, 645, 656, 681
Hsp92II	CATG	4 cut(s)	178, 266, 273, 334
HspAI	GCGC	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	788
LmnI	GCTCC	2 cut(s)	406, 435
LpnPI	CCDG	8 cut(s)	169, 272, 333, 452, 536, 583, 761, 799
Lsp1109I	GCAGC	3 cut(s)	159, 162, 324
LweI	GCATC	4 cut(s)	47, 310, 376, 574
MaeI	CTAG	1 cut(s)	450
MalI	GATC	1 cut(s)	790
MboI	GATC	1 cut(s)	788
MboII	GAAGA	8 cut(s)	118, 121, 160, 201, 686, 719, 761, 773
MfeI	CAATTG	2 cut(s)	378, 795
MhlI	GDGCHC	2 cut(s)	330, 359
MluCI	AATT	7 cut(s)	343, 378, 590, 623, 729, 795, 811
MlyI	GAGTC	3 cut(s)	469, 484, 581
MmeI	TCCRAC	1 cut(s)	542
MseI	TTAA	1 cut(s)	41
MslI	CAYNNNNRTG	1 cut(s)	380
MunI	CAATTG	2 cut(s)	378, 795
MwoI	GCNNNNNNNGC	3 cut(s)	77, 147, 334
NdeII	GATC	1 cut(s)	788
NlaIII	CATG	4 cut(s)	178, 266, 273, 334
NlaIV	GGNNCC	4 cut(s)	356, 357, 358, 437
NsbI	TGCGCA	1 cut(s)	293
NspI	RCATGY	1 cut(s)	178
OliI	CACNNNNGTG	1 cut(s)	380
PagI	TCATGA	1 cut(s)	330
PciI	ACATGT	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	555
PkrI	GCNGC	3 cut(s)	149, 152, 339
PleI	GAGTC	3 cut(s)	468, 484, 580
PpsI	GAGTC	3 cut(s)	468, 484, 580
PpuMI	RGGWCCY	1 cut(s)	606
PscI	ACATGT	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	330
Psp5II	RGGWCCY	1 cut(s)	606
PspN4I	GGNNCC	4 cut(s)	356, 357, 358, 437
PspOMI	GGGCCC	1 cut(s)	355
PspPI	GGNCC	3 cut(s)	355, 356, 606
PspPPI	RGGWCCY	1 cut(s)	606
PstI	CTGCAG	1 cut(s)	342
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	41
SatI	GCNGC	3 cut(s)	148, 151, 338
Sau3AI	GATC	1 cut(s)	788
Sau96I	GGNCC	3 cut(s)	355, 356, 606
SchI	GAGTC	3 cut(s)	469, 484, 581
SduI	GDGCHC	2 cut(s)	330, 359
SetI	ASST	9 cut(s)	73, 87, 116, 330, 508, 535, 608, 682, 780
SfaNI	GCATC	4 cut(s)	47, 310, 376, 574
SfcI	CTRYAG	2 cut(s)	142, 338
SinI	GGWCC	1 cut(s)	606
SmiMI	CAYNNNNRTG	1 cut(s)	380
Sse9I	AATT	7 cut(s)	343, 378, 590, 623, 729, 795, 811
SspMI	CTAG	1 cut(s)	450
SstI	GAGCTC	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	2 cut(s)	99, 414
TasI	AATT	7 cut(s)	343, 378, 590, 623, 729, 795, 811
TfiI	GAWTC	1 cut(s)	555
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	31
TseI	GCWGC	3 cut(s)	147, 150, 337
TspDTI	ATGAA	2 cut(s)	26, 750
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	606
XapI	RAATTY	3 cut(s)	343, 590, 623
XceI	RCATGY	1 cut(s)	178
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.