Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012047.1

Orthogroup ID

OG0011744

Physical Location & Seq

Genomic Coordinates Reverse (-)

12 .. 848

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012047.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atgttctgctggagaaggacttctaagtctttgagccacatggctcaaagcccccaacagctttgttcttcattcagaatcacagacacacttgtccatgaaccaaatgctcagcttcagcttcatatgcacacagcaagcaacaatgatttgctgctcaaaccctttgaagaagatgaactggatgcagagcttatgaggctgcaaagcgcttctgggccaccaagacacctcttcacaattgtagaggaaacaaaggaggacttggaatctgaagatgcgaagtctaggtgtggcgacaagagccaaaaggggtcaaggagtaagagtttgagtgatttgcttatcacagtggagacaccatatttgactcctttgggctctccaactcttttcacacctcctctcactcctgtggactctcataaccaacatggattcaatttcagttcccctctctttgaatcaaagagtgatgcagagttcaacaggataaggtcatcacctcctccaaagttcaagttcttgcaggaagcagaggagaaacttagagtgaaattaaaggaacaagctgaggagggtcttcagaagaaagatggacctgttgaagagaaagagagtaaagctagtaaagcttcaatgtcaaagttccttaaagatgaggatcaagatgggtcttatatcaccataattgttgacaagaacaaagaaagggagctcaatcaccatcttcatcatctacaacaacaccattcaagcacttcacaggtactcccactagtttcttcaccttcagcattcagatcatcaatcaacaagaagcccactttacattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

278

Amino Acids

31.49

Weight (kDa)

6.4

Isoelectric Point (pI)

64.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39560
fragaria_vesca	FvH4_7g22100
prunus_persica	Prupe.2G233200_v2.0.a1
pyrus_communis	pycom01g15200 pycom07g18430
rosa_chinensis	RchiOBHm_Chr1g0366491
rosa_laevigata	RLG00000027343
rosa_multiflora	Rmu_sc0012047.1_g000001 Rmu_ssc0000192.1_g000002 Rmu_ssc0000250.1_g000020
rosa_roxburghii	Rroxscaffold_4G00289880 Rroxscaffold_4G00290140
rosa_rugosa	Rorug01G0330400
rosa_samantha	Rh1AG338300 Rh1BG299800 Rh1CG314900 Rh1DG331600 Rh2AG519400
rosa_wichuraiana	Rw1G029950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	25, 92
AclWI	GGATC	1 cut(s)	672
AcuI	CTGAAG	4 cut(s)	101, 294, 569, 777
AfaI	GTAC	1 cut(s)	771
AfeI	AGCGCT	1 cut(s)	211
AgsI	TTSAA	8 cut(s)	170, 442, 464, 487, 520, 608, 639, 756
AhlI	ACTAGT	1 cut(s)	778
AleI	CACNNNNGTG	1 cut(s)	413
AluBI	AGCT	8 cut(s)	61, 115, 121, 193, 572, 626, 635, 718
AluI	AGCT	8 cut(s)	61, 115, 121, 193, 572, 626, 635, 718
Alw21I	GWGCWC	1 cut(s)	720
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	1 cut(s)	672
Aor51HI	AGCGCT	1 cut(s)	211
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	2 cut(s)	154, 202
ArsI	GACNNNNNNTTYG	2 cut(s)	349, 381
Asp700I	GAANNNNTTC	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	218, 599
AsuHPI	GGTGA	4 cut(s)	495, 676, 716, 780
AvaII	GGWCC	1 cut(s)	599
BanII	GRGCYC	2 cut(s)	383, 720
BbsI	GAAGAC	1 cut(s)	575
Bbv12I	GWGCWC	1 cut(s)	720
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	2 cut(s)	141, 189
BccI	CCATC	3 cut(s)	590, 665, 735
BcoDI	GTCTC	1 cut(s)	350
BcuI	ACTAGT	1 cut(s)	778
BfaI	CTAG	3 cut(s)	288, 627, 779
BfoI	RGCGCY	1 cut(s)	213
BisI	GCNGC	2 cut(s)	155, 203
BlpI	GCTNAGC	1 cut(s)	111
BlsI	GCNGC	2 cut(s)	156, 204
Bme18I	GGWCC	1 cut(s)	599
BmgT120I	GGNCC	2 cut(s)	218, 599
BmsI	GCATC	3 cut(s)	175, 268, 466
BpiI	GAAGAC	1 cut(s)	575
BpmI	CTGGAG	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	573
Bpu1102I	GCTNAGC	1 cut(s)	111
BsaBI	GATNNNNATC	1 cut(s)	663
BsaXI	ACNNNNNCTCC	4 cut(s)	313, 343, 756, 786
Bse1I	ACTGG	1 cut(s)	186
Bse8I	GATNNNNATC	1 cut(s)	663
BseGI	GGATG	1 cut(s)	190
BseJI	GATNNNNATC	1 cut(s)	663
BseMII	CTCAG	2 cut(s)	125, 564
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	4 cut(s)	393, 498, 554, 590
BseXI	GCAGC	2 cut(s)	141, 189
BshFI	GGCC	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	720
BsmAI	GTCTC	1 cut(s)	350
BsmI	GAATGC	1 cut(s)	797
BsnI	GGCC	1 cut(s)	220
Bsp1286I	GDGCHC	2 cut(s)	383, 720
Bsp143I	GATC	2 cut(s)	664, 803
Bsp1720I	GCTNAGC	1 cut(s)	111
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	2 cut(s)	124, 565
BspPI	GGATC	1 cut(s)	672
BsrI	ACTGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	664, 803
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	2 cut(s)	239, 603
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	4 cut(s)	24, 111, 548, 573
BstF5I	GGATG	1 cut(s)	190
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	2 cut(s)	667, 806
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	2 cut(s)	664, 803
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 199, 303, 632
BstV1I	GCAGC	2 cut(s)	141, 189
BstV2I	GAAGAC	1 cut(s)	575
BsuRI	GGCC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	139
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	2 cut(s)	218, 599
Csp6I	GTAC	1 cut(s)	770
CviAII	CATG	3 cut(s)	40, 98, 434
CviQI	GTAC	1 cut(s)	770
DdeI	CTNAG	4 cut(s)	24, 111, 548, 573
DpnI	GATC	2 cut(s)	666, 805
DpnII	GATC	2 cut(s)	664, 803
DrdI	GACNNNNNNGTC	2 cut(s)	25, 92
DseDI	GACNNNNNNGTC	2 cut(s)	25, 92
Eam1104I	CTCTTC	2 cut(s)	239, 603
EarI	CTCTTC	2 cut(s)	239, 603
Ecl136II	GAGCTC	1 cut(s)	718
Eco24I	GRGCYC	2 cut(s)	383, 720
Eco47I	GGWCC	1 cut(s)	599
Eco47III	AGCGCT	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	718
Eco57I	CTGAAG	4 cut(s)	101, 294, 569, 777
EcoICRI	GAGCTC	1 cut(s)	718
EcoT38I	GRGCYC	2 cut(s)	383, 720
FaeI	CATG	3 cut(s)	43, 101, 437
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FatI	CATG	3 cut(s)	39, 97, 433
FauNDI	CATATG	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	155, 203
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	2 cut(s)	383, 720
Fsp4HI	GCNGC	2 cut(s)	155, 203
FspBI	CTAG	3 cut(s)	288, 627, 779
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	2 cut(s)	155, 203
GsuI	CTGGAG	1 cut(s)	31
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	3 cut(s)	43, 101, 437
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HindIII	AAGCTT	1 cut(s)	633
HinfI	GANTC	6 cut(s)	78, 269, 370, 419, 438, 464
HphI	GGTGA	4 cut(s)	495, 676, 716, 780
Hpy166II	GTNNAC	2 cut(s)	418, 697
Hpy188I	TCNGA	4 cut(s)	77, 274, 588, 803
Hpy188III	TCNNGA	1 cut(s)	668
Hpy8I	GTNNAC	2 cut(s)	418, 697
HpyAV	CCTTC	2 cut(s)	9, 801
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4V	TGCA	5 cut(s)	130, 188, 205, 479, 529
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 199, 303, 632
HpyF3I	CTNAG	4 cut(s)	24, 111, 548, 573
Hsp92II	CATG	3 cut(s)	43, 101, 437
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	664, 803
LmnI	GCTCC	1 cut(s)	715
LpnPI	CCDG	7 cut(s)	167, 201, 426, 475, 515, 615, 752
Lsp1109I	GCAGC	2 cut(s)	141, 189
LweI	GCATC	3 cut(s)	175, 268, 466
MaeI	CTAG	3 cut(s)	288, 627, 779
MalI	GATC	2 cut(s)	666, 805
MboI	GATC	2 cut(s)	664, 803
MfeI	CAATTG	1 cut(s)	240
MhlI	GDGCHC	2 cut(s)	383, 720
MluCI	AATT	4 cut(s)	240, 442, 557, 690
MlyI	GAGTC	2 cut(s)	364, 413
MmeI	TCCRAC	1 cut(s)	410
MroXI	GAANNNNTTC	1 cut(s)	19
MseI	TTAA	2 cut(s)	560, 654
MslI	CAYNNNNRTG	1 cut(s)	413
MunI	CAATTG	1 cut(s)	240
Mva1269I	GAATGC	1 cut(s)	797
MwoI	GCNNNNNNNGC	4 cut(s)	127, 199, 303, 632
NdeI	CATATG	1 cut(s)	126
NdeII	GATC	2 cut(s)	664, 803
NlaIII	CATG	3 cut(s)	43, 101, 437
OliI	CACNNNNGTG	1 cut(s)	413
PctI	GAATGC	1 cut(s)	797
PdmI	GAANNNNTTC	1 cut(s)	19
PfeI	GAWTC	4 cut(s)	78, 269, 438, 464
PkrI	GCNGC	2 cut(s)	156, 204
PleI	GAGTC	2 cut(s)	364, 413
PpsI	GAGTC	2 cut(s)	364, 413
Psp124BI	GAGCTC	1 cut(s)	720
PspPI	GGNCC	2 cut(s)	218, 599
RsaI	GTAC	1 cut(s)	771
RsaNI	GTAC	1 cut(s)	770
RseI	CAYNNNNRTG	1 cut(s)	413
SacI	GAGCTC	1 cut(s)	720
SaqAI	TTAA	2 cut(s)	560, 654
SatI	GCNGC	2 cut(s)	155, 203
Sau3AI	GATC	2 cut(s)	664, 803
Sau96I	GGNCC	2 cut(s)	218, 599
SchI	GAGTC	2 cut(s)	364, 413
SduI	GDGCHC	2 cut(s)	383, 720
SfaNI	GCATC	3 cut(s)	175, 268, 466
SinI	GGWCC	1 cut(s)	599
SmiMI	CAYNNNNRTG	1 cut(s)	413
SpeI	ACTAGT	1 cut(s)	778
Sse9I	AATT	4 cut(s)	240, 442, 557, 690
SspMI	CTAG	3 cut(s)	288, 627, 779
SstI	GAGCTC	1 cut(s)	720
TaaI	ACNGT	1 cut(s)	352
TasI	AATT	4 cut(s)	240, 442, 557, 690
TfiI	GAWTC	4 cut(s)	78, 269, 438, 464
Tru1I	TTAA	2 cut(s)	560, 654
Tru9I	TTAA	2 cut(s)	560, 654
TscAI	CASTG	1 cut(s)	357
TseI	GCWGC	2 cut(s)	154, 202
TspDTI	ATGAA	5 cut(s)	60, 113, 114, 192, 722
TspRI	CASTG	1 cut(s)	357
VpaK11BI	GGWCC	1 cut(s)	599
XmnI	GAANNNNTTC	1 cut(s)	19
XspI	CTAG	3 cut(s)	288, 627, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.