Rmu_ssc0000192.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000192.1
OG0011744
Physical Location & Seq
Reverse (-)
6409 .. 7086
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000192.1_g000002.1.cds

Sequence Viewer

Length: 381 bp
atgtcggagctgttcgggatccggcttggcgccgttgtggtcgccgggttcatcctcgccaccatgttctggaacaaggcgtccaaaattctgttttgccccaaaagacttggtttgagtgtggtttttggttgcttattcttggctctaattgctgagctttactacttgttgtggtggaagaagaggctgactaacagagagatagaagatgactacagcagcctatcaaaggaggtgttctacatgttctgctggagaaggacttcgaagtctttgagccacaaggctcaaagaccccaacaactttgttcttcattcagaatcacagacacacttgtccatgaaccaaatgctcagcttcatatgagaaagagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.8

Weight (kDa)

9.85

Isoelectric Point (pI)

59.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 271, 338
AccB1I GGYRCC 1 cut(s) 29
AccB7I CCANNNNNTGG 1 cut(s) 69
AclWI GGATC 2 cut(s) 13, 26
AcsI RAATTY 1 cut(s) 87
AcyI GRCGYC 2 cut(s) 30, 80
AfiI CCNNNNNNNGG 2 cut(s) 69, 232
AflIII ACRYGT 1 cut(s) 246
AloI GAACNNNNNNTCC 2 cut(s) 65, 97
AluBI AGCT 3 cut(s) 10, 160, 361
AluI AGCT 3 cut(s) 10, 160, 361
AlwI GGATC 2 cut(s) 13, 26
ApeKI GCWGC 1 cut(s) 222
ApoI RAATTY 1 cut(s) 87
Asp700I GAANNNNTTC 1 cut(s) 265
AspLEI GCGC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 46
AsuII TTCGAA 1 cut(s) 269
BamHI GGATCC 1 cut(s) 18
BanI GGYRCC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 234
BceAI ACGGC 1 cut(s) 17
BcnI CCSGG 1 cut(s) 46
BfmI CTRYAG 1 cut(s) 217
BfoI RGCGCY 1 cut(s) 33
BisI GCNGC 1 cut(s) 223
BlpI GCTNAGC 2 cut(s) 156, 357
BlsI GCNGC 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 20, 31
BmrFI CCNGG 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 277
Bpu1102I GCTNAGC 2 cut(s) 156, 357
Bpu14I TTCGAA 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 46
BsaHI GRCGYC 2 cut(s) 30, 80
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 232
BseGI GGATG 1 cut(s) 51
BseLI CCNNNNNNNGG 2 cut(s) 69, 232
BseMII CTCAG 2 cut(s) 147, 371
BseXI GCAGC 1 cut(s) 234
BshNI GGYRCC 1 cut(s) 29
BsiSI CCGG 2 cut(s) 22, 45
BslI CCNNNNNNNGG 2 cut(s) 69, 232
Bsp119I TTCGAA 1 cut(s) 269
Bsp143I GATC 1 cut(s) 18
Bsp1720I GCTNAGC 2 cut(s) 156, 357
BspCNI CTCAG 2 cut(s) 148, 370
BspLI GGNNCC 2 cut(s) 20, 31
BspPI GGATC 2 cut(s) 13, 26
BspT104I TTCGAA 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 29
BssMI GATC 1 cut(s) 18
BssNI GRCGYC 2 cut(s) 30, 80
Bst6I CTCTTC 1 cut(s) 179
BstACI GRCGYC 2 cut(s) 30, 80
BstBI TTCGAA 1 cut(s) 269
BstDEI CTNAG 2 cut(s) 156, 357
BstENI CCTNNNNNAGG 1 cut(s) 230
BstF5I GGATG 1 cut(s) 51
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BtsCI GGATG 1 cut(s) 51
CfoI GCGC 1 cut(s) 32
CseI GACGC 1 cut(s) 69
CviAII CATG 3 cut(s) 64, 247, 344
CviJI RGCY 9 cut(s) 10, 25, 146, 160, 190, 225, 282, 290, 361
CviKI_1 RGCY 9 cut(s) 10, 25, 146, 160, 190, 225, 282, 290, 361
DdeI CTNAG 2 cut(s) 156, 357
DinI GGCGCC 1 cut(s) 31
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
DrdI GACNNNNNNGTC 2 cut(s) 271, 338
DseDI GACNNNNNNGTC 2 cut(s) 271, 338
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
EcoNI CCTNNNNNAGG 1 cut(s) 230
EgeI GGCGCC 1 cut(s) 31
EheI GGCGCC 1 cut(s) 31
FaeI CATG 3 cut(s) 67, 250, 347
FaiI YATR 5 cut(s) 65, 248, 345, 366, 368
FatI CATG 3 cut(s) 63, 246, 343
FauNDI CATATG 1 cut(s) 366
Fnu4HI GCNGC 1 cut(s) 223
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 223
GlaI GCGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 223
GsuI CTGGAG 1 cut(s) 277
HaeII RGCGCY 1 cut(s) 33
HapII CCGG 2 cut(s) 22, 45
HgaI GACGC 1 cut(s) 69
HhaI GCGC 1 cut(s) 32
Hin1I GRCGYC 2 cut(s) 30, 80
Hin1II CATG 3 cut(s) 67, 250, 347
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HinfI GANTC 1 cut(s) 324
HpaII CCGG 2 cut(s) 22, 45
Hpy188I TCNGA 2 cut(s) 7, 323
Hpy188III TCNNGA 2 cut(s) 16, 70
HpyAV CCTTC 1 cut(s) 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 2 cut(s) 156, 357
Hsp92I GRCGYC 2 cut(s) 30, 80
Hsp92II CATG 3 cut(s) 67, 250, 347
HspAI GCGC 1 cut(s) 30
KasI GGCGCC 1 cut(s) 29
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 4 cut(s) 35, 55, 58, 241
Lsp1109I GCAGC 1 cut(s) 234
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 4 cut(s) 193, 196, 221, 306
MflI RGATCY 1 cut(s) 18
MluCI AATT 2 cut(s) 87, 150
Mly113I GGCGCC 1 cut(s) 30
MnlI CCTC 3 cut(s) 65, 180, 229
MroXI GAANNNNTTC 1 cut(s) 265
MspI CCGG 2 cut(s) 22, 45
MspR9I CCNGG 1 cut(s) 46
MwoI GCNNNNNNNGC 1 cut(s) 152
NarI GGCGCC 1 cut(s) 30
NciI CCSGG 1 cut(s) 46
NdeI CATATG 1 cut(s) 366
NdeII GATC 1 cut(s) 18
NlaIII CATG 3 cut(s) 67, 250, 347
NlaIV GGNNCC 2 cut(s) 20, 31
NspI RCATGY 1 cut(s) 250
NspV TTCGAA 1 cut(s) 269
PciI ACATGT 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 265
PfeI GAWTC 1 cut(s) 324
PflMI CCANNNNNTGG 1 cut(s) 69
PkrI GCNGC 1 cut(s) 224
PluTI GGCGCC 1 cut(s) 33
PscI ACATGT 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 20, 31
PsuI RGATCY 1 cut(s) 18
SatI GCNGC 1 cut(s) 223
Sau3AI GATC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 46
SetI ASST 4 cut(s) 12, 162, 240, 363
SfcI CTRYAG 1 cut(s) 217
SfoI GGCGCC 1 cut(s) 31
SfuI TTCGAA 1 cut(s) 269
Sse9I AATT 2 cut(s) 87, 150
SspDI GGCGCC 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 44
TaqI TCGA 1 cut(s) 269
TasI AATT 2 cut(s) 87, 150
TfiI GAWTC 1 cut(s) 324
TseI GCWGC 1 cut(s) 222
TspDTI ATGAA 4 cut(s) 40, 306, 353, 360
Van91I CCANNNNNTGG 1 cut(s) 69
XagI CCTNNNNNAGG 1 cut(s) 230
XapI RAATTY 1 cut(s) 87
XceI RCATGY 1 cut(s) 250
XmnI GAANNNNTTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.