Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011744

Physical Location & Seq

Genomic Coordinates Reverse (-)

44891986 .. 44894504

Gene Structure 2519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0330400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGTCTCAACAGGTAGAGGAGGAGAGGGAACAGCCAAACATGGAAGAAGCCGATCATCAACATGATCATCAAGAGGAAGAAGTCATCATAGGCTGCAACGAACAACACAACAACAACAACACCGCCACCACCACCACCACCACCACCACCACCAACAACATTATTATCAAGGGCAAGCGCACAAAGCGCCTTAGGCCTCAATCCCCCATCCCTTTCGCCATCCCCACGAACTCGTCCACCGCGGATGGCGGTGGCCAAGGTGGCGGTGGTGGTGAGTGTAACAACACCACCAACTCGTCCCCCACCACCTCCACGGAGTTCCAGGATAGCACCGAGGAAGAGGAGGACATGGCGAATTGTTTGATCCTCTTGGCACAAGGCCAATCCCGGGGTCCTTCTTCGTCCCCCAAGCTGCCCCAAGCCCATAACGATCACAACGCAACCACAACAACAAGTCGGAGATTCCTGGAAGCAACACCCCTCGCCGCTGCCGTGGGACCCGCCAAGATGGCTGGGCCGGCTGCAGCAGCTGGCGGGTATTATGTGTATGAATGCAAGACGTGTAACCGGACTTTCCCTTCTTTCCAAGCATTGGGTGGTCACCGGGCGAGTCACAAGAAGCCAAAAGCAGCGATAAATGTGGATGACAAGAAGCAGTTTGGAATTGGGCTGTTACCATCGGATGAAGAAGACACACAATTATTCAAGAACATGAACATGAACAACAACACGTCCTCCTCATCCCTACTTTCTCTTCATTTGAGTAACAGGGGGCTGGTCTTGAGTACCAACAACAACAAGTCTAAGGTTCATGAGTGCTCCATTTGCGGGGCGGAGTTCACCTCCGGTCAGGCCTTGGGAGGCCACATGAGGCGCCACCGGGCTCCCGTTGGAGGACCAGCTACCCTGGCGTTGACAGCTCCTCCTCCAACAGTTCCTTTAGCCTTGGAAGCTCCGCAACCACAACAAAACCAACACCAACATCAACACCACCACCAACAACAGCCCTTAAAGAAGCAAAGAAGCATGTTGTCTTTGGATTTGGATCTCAACCTTCCAGCACCCGAAGATGATCATCATCATCGAGATCAATCCAAATTTGTGTTTGCACCCAAACAGCAGCAGCAACAACAACCGCAGCAGCCTCCGCAGCAACAGCAGCAAGAGAGGTTAAGAATTTTGGTGGATTGTCATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

399

Amino Acids

43.68

Weight (kDa)

6.39

Isoelectric Point (pI)

74.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	182 - 208	8.1e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	270 - 296	1.8e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011744)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39560
fragaria_vesca	FvH4_7g22100
prunus_persica	Prupe.2G233200_v2.0.a1
pyrus_communis	pycom01g15200 pycom07g18430
rosa_chinensis	RchiOBHm_Chr1g0366491
rosa_laevigata	RLG00000027343
rosa_multiflora	Rmu_sc0012047.1_g000001 Rmu_ssc0000192.1_g000002 Rmu_ssc0000250.1_g000020
rosa_roxburghii	Rroxscaffold_4G00289880 Rroxscaffold_4G00290140
rosa_rugosa	Rorug01G0330400
rosa_samantha	Rh1AG338300 Rh1BG299800 Rh1CG314900 Rh1DG331600 Rh2AG519400
rosa_wichuraiana	Rw1G029950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	873
AccB7I	CCANNNNNTGG	1 cut(s)	592
AccII	CGCG	1 cut(s)	242
AclWI	GGATC	2 cut(s)	358, 1053
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	2 cut(s)	1097, 1176
AcyI	GRCGYC	1 cut(s)	874
AfaI	GTAC	1 cut(s)	787
AfiI	CCNNNNNNNGG	4 cut(s)	388, 592, 828, 893
AflIII	ACRYGT	2 cut(s)	560, 729
AgsI	TTSAA	1 cut(s)	706
AjiI	CACGTC	2 cut(s)	561, 732
AjnI	CCWGG	3 cut(s)	321, 465, 906
AluBI	AGCT	5 cut(s)	412, 530, 902, 920, 953
AluI	AGCT	5 cut(s)	412, 530, 902, 920, 953
Alw21I	GWGCWC	1 cut(s)	821
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	358, 1053
AlwNI	CAGNNNCTG	1 cut(s)	530
Ama87I	CYCGRG	1 cut(s)	387
AoxI	GGCC	6 cut(s)	194, 253, 379, 515, 852, 862
ApoI	RAATTY	2 cut(s)	1097, 1176
AspLEI	GCGC	3 cut(s)	180, 189, 876
AspS9I	GGNCC	4 cut(s)	392, 497, 515, 896
AsuC2I	CCSGG	4 cut(s)	388, 389, 605, 881
AsuHPI	GGTGA	3 cut(s)	284, 593, 832
AvaI	CYCGRG	1 cut(s)	387
AvaII	GGWCC	3 cut(s)	392, 497, 896
AxyI	CCTNAGG	1 cut(s)	191
BalI	TGGCCA	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	873
BanII	GRGCYC	1 cut(s)	886
BbsI	GAAGAC	1 cut(s)	696
Bbv12I	GWGCWC	1 cut(s)	821
BccI	CCATC	5 cut(s)	215, 227, 239, 502, 685
BceAI	ACGGC	1 cut(s)	476
BciT130I	CCWGG	3 cut(s)	323, 467, 908
BclI	TGATCA	2 cut(s)	64, 1072
BcnI	CCSGG	4 cut(s)	388, 389, 605, 881
BcoDI	GTCTC	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	522
BfoI	RGCGCY	2 cut(s)	190, 877
BglI	GCCNNNNNGGC	2 cut(s)	261, 509
Bme1390I	CCNGG	7 cut(s)	323, 388, 389, 467, 605, 881, 908
Bme18I	GGWCC	3 cut(s)	392, 497, 896
BmeT110I	CYCGRG	1 cut(s)	387
BmgBI	CACGTC	2 cut(s)	561, 732
BmgT120I	GGNCC	4 cut(s)	392, 497, 515, 896
BmiI	GGNNCC	5 cut(s)	393, 498, 499, 875, 885
BmrFI	CCNGG	7 cut(s)	323, 388, 389, 467, 605, 881, 908
BpiI	GAAGAC	1 cut(s)	696
BplI	GAGNNNNNCTC	2 cut(s)	827, 859
BpuEI	CTTGAG	1 cut(s)	802
BpuMI	CCSGG	4 cut(s)	388, 389, 605, 881
BsaBI	GATNNNNATC	3 cut(s)	1044, 1074, 1077
BsaHI	GRCGYC	1 cut(s)	874
BsaWI	WCCGGW	2 cut(s)	567, 845
BsaXI	ACNNNNNCTCC	4 cut(s)	719, 749, 907, 937
Bsc4I	CCNNNNNNNGG	4 cut(s)	388, 592, 828, 893
Bse118I	RCCGGY	1 cut(s)	517
Bse21I	CCTNAGG	1 cut(s)	191
Bse8I	GATNNNNATC	3 cut(s)	1044, 1074, 1077
BseBI	CCWGG	3 cut(s)	323, 467, 908
BseGI	GGATG	6 cut(s)	207, 219, 250, 649, 688, 740
BseJI	GATNNNNATC	3 cut(s)	1044, 1074, 1077
BseLI	CCNNNNNNNGG	4 cut(s)	388, 592, 828, 893
BseRI	GAGGAG	6 cut(s)	32, 35, 356, 727, 912, 915
BseYI	CCCAGC	1 cut(s)	512
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	6 cut(s)	196, 255, 381, 517, 854, 864
BshNI	GGYRCC	1 cut(s)	873
BsiHKAI	GWGCWC	1 cut(s)	821
BsiHKCI	CYCGRG	1 cut(s)	387
BsiSI	CCGG	6 cut(s)	388, 518, 568, 604, 846, 880
BslFI	GGGAC	3 cut(s)	283, 388, 510
BslI	CCNNNNNNNGG	4 cut(s)	388, 592, 828, 893
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	3 cut(s)	283, 388, 510
BsmI	GAATGC	1 cut(s)	557
BsnI	GGCC	6 cut(s)	196, 255, 381, 517, 854, 864
BsoBI	CYCGRG	1 cut(s)	387
Bsp1286I	GDGCHC	2 cut(s)	821, 886
Bsp143I	GATC	7 cut(s)	52, 64, 363, 430, 1045, 1072, 1087
BspANI	GGCC	6 cut(s)	196, 255, 381, 517, 854, 864
BspFNI	CGCG	1 cut(s)	242
BspHI	TCATGA	1 cut(s)	811
BspLI	GGNNCC	5 cut(s)	393, 498, 499, 875, 885
BspMAI	CTGCAG	1 cut(s)	526
BspPI	GGATC	2 cut(s)	358, 1053
BspT107I	GGYRCC	1 cut(s)	873
BsrFI	RCCGGY	1 cut(s)	517
BssAI	RCCGGY	1 cut(s)	517
BssMI	GATC	7 cut(s)	52, 64, 363, 430, 1045, 1072, 1087
BssNI	GRCGYC	1 cut(s)	874
BssT1I	CCWWGG	3 cut(s)	256, 855, 945
Bst2UI	CCWGG	3 cut(s)	323, 467, 908
Bst4CI	ACNGT	1 cut(s)	934
Bst6I	CTCTTC	2 cut(s)	333, 759
BstACI	GRCGYC	1 cut(s)	874
BstC8I	GCNNGC	3 cut(s)	176, 519, 532
BstDEI	CTNAG	2 cut(s)	191, 804
BstDSI	CCRYGG	3 cut(s)	240, 312, 492
BstEII	GGTNACC	1 cut(s)	599
BstF5I	GGATG	6 cut(s)	207, 219, 250, 649, 688, 740
BstFNI	CGCG	1 cut(s)	242
BstH2I	RGCGCY	2 cut(s)	190, 877
BstHHI	GCGC	3 cut(s)	180, 189, 876
BstKTI	GATC	7 cut(s)	55, 67, 366, 433, 1048, 1075, 1090
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	7 cut(s)	52, 64, 363, 430, 1045, 1072, 1087
BstNI	CCWGG	3 cut(s)	323, 467, 908
BstNSI	RCATGY	1 cut(s)	1030
BstPI	GGTNACC	1 cut(s)	599
BstSCI	CCNGG	7 cut(s)	321, 386, 387, 465, 603, 879, 906
BstSFI	CTRYAG	1 cut(s)	522
BstUI	CGCG	1 cut(s)	242
BstV2I	GAAGAC	1 cut(s)	696
BstX2I	RGATCY	1 cut(s)	1045
BstYI	RGATCY	1 cut(s)	1045
Bsu36I	CCTNAGG	1 cut(s)	191
BsuRI	GGCC	6 cut(s)	196, 255, 381, 517, 854, 864
BtgI	CCRYGG	3 cut(s)	240, 312, 492
BtrI	CACGTC	2 cut(s)	561, 732
BtsCI	GGATG	6 cut(s)	207, 219, 250, 649, 688, 740
Cac8I	GCNNGC	3 cut(s)	176, 519, 532
CaiI	CAGNNNCTG	1 cut(s)	530
CciI	TCATGA	1 cut(s)	811
CfoI	GCGC	3 cut(s)	180, 189, 876
Cfr10I	RCCGGY	1 cut(s)	517
Cfr13I	GGNCC	4 cut(s)	392, 497, 515, 896
Cfr42I	CCGCGG	1 cut(s)	243
Cfr9I	CCCGGG	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	786
CviAII	CATG	8 cut(s)	40, 62, 349, 712, 718, 812, 868, 1027
CviQI	GTAC	1 cut(s)	786
DdeI	CTNAG	2 cut(s)	191, 804
DinI	GGCGCC	1 cut(s)	875
DpnI	GATC	7 cut(s)	54, 66, 365, 432, 1047, 1074, 1089
DpnII	GATC	7 cut(s)	52, 64, 363, 430, 1045, 1072, 1087
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	333, 759
EarI	CTCTTC	2 cut(s)	333, 759
EciI	GGCGGA	1 cut(s)	848
Eco130I	CCWWGG	3 cut(s)	256, 855, 945
Eco147I	AGGCCT	2 cut(s)	196, 854
Eco24I	GRGCYC	1 cut(s)	886
Eco47I	GGWCC	3 cut(s)	392, 497, 896
Eco81I	CCTNAGG	1 cut(s)	191
Eco88I	CYCGRG	1 cut(s)	387
Eco91I	GGTNACC	1 cut(s)	599
EcoO109I	RGGNCCY	2 cut(s)	392, 497
EcoO65I	GGTNACC	1 cut(s)	599
EcoRII	CCWGG	3 cut(s)	321, 465, 906
EcoT14I	CCWWGG	3 cut(s)	256, 855, 945
EcoT38I	GRGCYC	1 cut(s)	886
EgeI	GGCGCC	1 cut(s)	875
EheI	GGCGCC	1 cut(s)	875
ErhI	CCWWGG	3 cut(s)	256, 855, 945
FaeI	CATG	8 cut(s)	43, 65, 352, 715, 721, 815, 871, 1030
FaqI	GGGAC	3 cut(s)	283, 388, 510
FatI	CATG	8 cut(s)	39, 61, 348, 711, 717, 811, 867, 1026
FauI	CCCGC	3 cut(s)	508, 527, 821
FbaI	TGATCA	2 cut(s)	64, 1072
FokI	GGATG	6 cut(s)	194, 206, 257, 656, 695, 727
FriOI	GRGCYC	1 cut(s)	886
GlaI	GCGC	3 cut(s)	179, 188, 875
GsaI	CCCAGC	1 cut(s)	516
HaeII	RGCGCY	2 cut(s)	190, 877
HaeIII	GGCC	6 cut(s)	196, 255, 381, 517, 854, 864
HapII	CCGG	6 cut(s)	388, 518, 568, 604, 846, 880
HhaI	GCGC	3 cut(s)	180, 189, 876
Hin1I	GRCGYC	1 cut(s)	874
Hin1II	CATG	8 cut(s)	43, 65, 352, 715, 721, 815, 871, 1030
Hin6I	GCGC	3 cut(s)	178, 187, 874
HinP1I	GCGC	3 cut(s)	178, 187, 874
HincII	GTYRAC	1 cut(s)	915
HindII	GTYRAC	1 cut(s)	915
HinfI	GANTC	2 cut(s)	462, 610
HpaII	CCGG	6 cut(s)	388, 518, 568, 604, 846, 880
HphI	GGTGA	3 cut(s)	284, 593, 832
Hpy166II	GTNNAC	3 cut(s)	237, 840, 915
Hpy188I	TCNGA	2 cut(s)	459, 682
Hpy188III	TCNNGA	5 cut(s)	71, 706, 781, 812, 1085
Hpy8I	GTNNAC	3 cut(s)	237, 840, 915
HpyAV	CCTTC	3 cut(s)	405, 588, 1064
HpyCH4III	ACNGT	1 cut(s)	934
HpyCH4IV	ACGT	2 cut(s)	560, 731
HpyCH4V	TGCA	4 cut(s)	96, 524, 555, 1109
HpyF3I	CTNAG	2 cut(s)	191, 804
HpySE526I	ACGT	2 cut(s)	560, 731
Hsp92I	GRCGYC	1 cut(s)	874
Hsp92II	CATG	8 cut(s)	43, 65, 352, 715, 721, 815, 871, 1030
HspAI	GCGC	3 cut(s)	178, 187, 874
KasI	GGCGCC	1 cut(s)	873
KflI	GGGWCCC	1 cut(s)	497
KroI	GCCGGC	1 cut(s)	517
KroNI	GCCGGC	1 cut(s)	519
Ksp22I	TGATCA	2 cut(s)	64, 1072
KspI	CCGCGG	1 cut(s)	243
Kzo9I	GATC	7 cut(s)	52, 64, 363, 430, 1045, 1072, 1087
LmnI	GCTCC	4 cut(s)	824, 889, 925, 958
MaeII	ACGT	2 cut(s)	560, 731
MaeIII	GTNAC	6 cut(s)	278, 563, 599, 611, 672, 764
MalI	GATC	7 cut(s)	54, 66, 365, 432, 1047, 1074, 1089
MboI	GATC	7 cut(s)	52, 64, 363, 430, 1045, 1072, 1087
MboII	GAAGA	8 cut(s)	56, 89, 350, 390, 698, 701, 746, 1079
MflI	RGATCY	1 cut(s)	1045
MhlI	GDGCHC	2 cut(s)	821, 886
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	5 cut(s)	355, 663, 698, 1097, 1176
MluNI	TGGCCA	1 cut(s)	255
Mly113I	GGCGCC	1 cut(s)	874
MlyI	GAGTC	1 cut(s)	619
MmeI	TCCRAC	3 cut(s)	437, 871, 953
Mox20I	TGGCCA	1 cut(s)	255
MroNI	GCCGGC	1 cut(s)	517
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	2 cut(s)	1010, 1172
MslI	CAYNNNNRTG	2 cut(s)	60, 716
Msp20I	TGGCCA	1 cut(s)	255
MspA1I	CMGCKG	3 cut(s)	242, 488, 530
MspI	CCGG	6 cut(s)	388, 518, 568, 604, 846, 880
MspR9I	CCNGG	7 cut(s)	323, 388, 389, 467, 605, 881, 908
Mva1269I	GAATGC	1 cut(s)	557
MvaI	CCWGG	3 cut(s)	323, 467, 908
MvnI	CGCG	1 cut(s)	242
NaeI	GCCGGC	1 cut(s)	519
NarI	GGCGCC	1 cut(s)	874
NciI	CCSGG	4 cut(s)	388, 389, 605, 881
NdeII	GATC	7 cut(s)	52, 64, 363, 430, 1045, 1072, 1087
NgoMIV	GCCGGC	1 cut(s)	517
NlaIII	CATG	8 cut(s)	43, 65, 352, 715, 721, 815, 871, 1030
NlaIV	GGNNCC	5 cut(s)	393, 498, 499, 875, 885
NmuCI	GTSAC	2 cut(s)	599, 611
NspI	RCATGY	1 cut(s)	1030
PagI	TCATGA	1 cut(s)	811
PceI	AGGCCT	2 cut(s)	196, 854
PcsI	WCGNNNNNNNCGW	1 cut(s)	489
PctI	GAATGC	1 cut(s)	557
PdiI	GCCGGC	1 cut(s)	519
PfeI	GAWTC	1 cut(s)	462
PflMI	CCANNNNNTGG	1 cut(s)	592
PfoI	TCCNGGA	2 cut(s)	321, 465
PleI	GAGTC	1 cut(s)	618
PluTI	GGCGCC	1 cut(s)	877
PpsI	GAGTC	1 cut(s)	618
PpuMI	RGGWCCY	2 cut(s)	392, 497
Psp5II	RGGWCCY	2 cut(s)	392, 497
Psp6I	CCWGG	3 cut(s)	321, 465, 906
PspEI	GGTNACC	1 cut(s)	599
PspFI	CCCAGC	1 cut(s)	512
PspGI	CCWGG	3 cut(s)	321, 465, 906
PspN4I	GGNNCC	5 cut(s)	393, 498, 499, 875, 885
PspPI	GGNCC	4 cut(s)	392, 497, 515, 896
PspPPI	RGGWCCY	2 cut(s)	392, 497
PstI	CTGCAG	1 cut(s)	526
PstNI	CAGNNNCTG	1 cut(s)	530
PsuI	RGATCY	1 cut(s)	1045
PvuII	CAGCTG	1 cut(s)	530
RsaI	GTAC	1 cut(s)	787
RsaNI	GTAC	1 cut(s)	786
RseI	CAYNNNNRTG	2 cut(s)	60, 716
SacII	CCGCGG	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	1010, 1172
Sau3AI	GATC	7 cut(s)	52, 64, 363, 430, 1045, 1072, 1087
Sau96I	GGNCC	4 cut(s)	392, 497, 515, 896
SchI	GAGTC	1 cut(s)	619
ScrFI	CCNGG	7 cut(s)	323, 388, 389, 467, 605, 881, 908
SduI	GDGCHC	2 cut(s)	821, 886
SfcI	CTRYAG	1 cut(s)	522
SfoI	GGCGCC	1 cut(s)	875
Sfr303I	CCGCGG	1 cut(s)	243
SgrBI	CCGCGG	1 cut(s)	243
SinI	GGWCC	3 cut(s)	392, 497, 896
SmaI	CCCGGG	1 cut(s)	389
SmiMI	CAYNNNNRTG	2 cut(s)	60, 716
SmlI	CTYRAG	1 cut(s)	781
SmoI	CTYRAG	1 cut(s)	781
Sse9I	AATT	5 cut(s)	355, 663, 698, 1097, 1176
SseBI	AGGCCT	2 cut(s)	196, 854
SspDI	GGCGCC	1 cut(s)	873
StuI	AGGCCT	2 cut(s)	196, 854
StyD4I	CCNGG	7 cut(s)	321, 386, 387, 465, 603, 879, 906
StyI	CCWWGG	3 cut(s)	256, 855, 945
TaaI	ACNGT	1 cut(s)	934
TaiI	ACGT	2 cut(s)	563, 734
TaqI	TCGA	1 cut(s)	1084
TasI	AATT	5 cut(s)	355, 663, 698, 1097, 1176
TauI	GCSGC	1 cut(s)	488
TfiI	GAWTC	1 cut(s)	462
Tru1I	TTAA	2 cut(s)	1010, 1172
Tru9I	TTAA	2 cut(s)	1010, 1172
TseFI	GTSAC	2 cut(s)	599, 611
Tsp45I	GTSAC	2 cut(s)	599, 611
TspDTI	ATGAA	6 cut(s)	564, 699, 728, 734, 746, 800
TspGWI	ACGGA	1 cut(s)	329
TspMI	CCCGGG	1 cut(s)	387
Van91I	CCANNNNNTGG	1 cut(s)	592
VpaK11BI	GGWCC	3 cut(s)	392, 497, 896
XapI	RAATTY	2 cut(s)	1097, 1176
XceI	RCATGY	1 cut(s)	1030
XcmI	CCANNNNNNNNNTGG	2 cut(s)	263, 593
XmaI	CCCGGG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.