Prupe.2G241100_v2.0.a1

Mur ligase middle domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
26056714 .. 26062276
5563 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G241100.2

Sequence Viewer

Length: 1617 bp
ATGGGAGAAGGTGGCGATGGCTCTTCGAAACCAACTCCTTATGAAGAGGCATTGGATGCTTTGTCCTCTTTAATCACAAAACGCAGTCGTGCCGATACGAGCAACAACGGGGACTGCTTCGAACTGCTATCTGACTATCTCAAAATATTGGAGTTAGACGAGCCAATTTCACAGTTGAAGATTATTCATGTGGCTGGCACCAAAGGAAAGGGATCTACCTGCACCTTCACAGAATCAATATTACGCCATTGTGGCTTTCGCACAGGACTTTTCACATCTCCTCATCTCATTGATGTTCGAGAAAGATTTCGTTTGGATGGTGTGGACATCAGCGAAGAGAAATTTTTAGCATATTTCTGGTGGTGTTTTGAGAGACTAAAGGAAAAAGCTAGTGATGGTATACCAATGCCTTCCTACTTTCGCTTCCTTGCCTTGCTTGCCTTCAAGATATTTGCTGCAGAAGAGGTAGATGTTGCTATCTTGGAGGTTGGGTTAGGTGGAAAGTATGATGCAACAAATGTGGTTAAGGCACCTGTTGTTTGTGGTGTATCTTCCCTTGGATATGACCACATGGAGATTCTTGGAAATACTCTGGGAGCAATTGCTGGGGAGAAGGCTGGAATCTTCAAGCCTGGGGTTCCTGCCTTGACTGTGCCCCAACCTGATGAAGCAATGTGTGTACTGGAAGAGAAGGCTTCTGAGTTGAATGTACCTCTTCAACTGGTACGACCTTTGGATGCCAATTTGCTGAATGGCTTCAAACTTGGGCTTGAAGGGGAGCACCAATATGTTAATGCTGGTCTCGCTATTGCACTGTCCTCTACGTGGCTTCAGAGGACAGGTCATCTTGAAGTCCCATACCCAGAACATACTACCTCTCTGCCAGAGCAGTTCATAAAAGGACTAACTGCTACAGTCAGTTTACAAGGACGGGCTCAAATTGTCCCCGATAACAATGAAAGCCCTGAAGATCTTGTGTTCTATTTGGATGGTGCCCATAGCCCAGAAAGCATGGAAATATGCGCAAGATGGTTTTCTCTTTCCATTAAGGGTGACTCCCAGGAAAAAATCTTGAGTTGTCAGCCACTGGATGCTTCCAGATCATCACATGATTTGGTACAGAGGAAACCTGATGGAAAATCCAGGAAGAATTCAACACAGATACTGCTGTTTAATTGTATGTCAGTGAGGGATCCTCAGTTGCTTCTTCCGAACCTGATGAAAACATGTGCTAGTCATGGTGTCTACTTCAAGAAGGCTCTATTTGTACCAAACACATCAGTGTATAACAAGGTGGGTTCGCATTCCTTACCTGCGACTGATTCTCAAGTTGATTTGTCATGGCAGTTCGCGCTTCAAAGAGTTTGGGAAAACCTAATGCTGGGTGACAAAGCAGGAGGTGATGAGAAGAGCACAGGCGCTGTTTTTGAAGAACTAACAGATGATACGGAAATGGCTGTCAGAAGTTGTGAAAATAGTGCAGTCTTCCCCTCTCTCCCGTCAGCTATAAAATGGCTCAGGGACAGTGTCCGAAAAAGTCAGTCTGTTCGTTTTCAGGTCCTCGTAACTGGTTCTTTACATCTCATCGGTGATGTGTTGAAATTAATCAAGAAGTGA

Protein Analysis

539

Amino Acids

59.15

Weight (kDa)

5.51

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1024
Acc36I ACCTGC 2 cut(s) 227, 1321
AccB1I GGYRCC 3 cut(s) 197, 529, 992
AccI GTMKAC 2 cut(s) 400, 1245
AccII CGCG 1 cut(s) 1352
AclWI GGATC 3 cut(s) 220, 1187, 1200
AcsI RAATTY 2 cut(s) 341, 1150
AcuI CTGAAG 2 cut(s) 815, 987
AfaI GTAC 5 cut(s) 681, 711, 726, 1119, 1269
AfiI CCNNNNNNNGG 2 cut(s) 825, 1381
AflIII ACRYGT 1 cut(s) 1226
AjnI CCWGG 3 cut(s) 631, 1059, 1142
AleI CACNNNNGTG 1 cut(s) 1280
AluBI AGCT 2 cut(s) 389, 1505
AluI AGCT 2 cut(s) 389, 1505
Alw21I GWGCWC 2 cut(s) 783, 1415
Alw26I GTCTC 2 cut(s) 367, 806
AlwI GGATC 3 cut(s) 220, 1187, 1200
AlwNI CAGNNNCTG 3 cut(s) 1087, 1165, 1421
ApeKI GCWGC 1 cut(s) 455
ApoI RAATTY 2 cut(s) 341, 1150
AseI ATTAAT 1 cut(s) 1604
Asp700I GAANNNNTTC 2 cut(s) 306, 755
AspLEI GCGC 3 cut(s) 1025, 1354, 1421
AspS9I GGNCC 1 cut(s) 1558
AsuHPI GGTGA 4 cut(s) 1064, 1397, 1412, 1601
AsuII TTCGAA 2 cut(s) 26, 120
AvaII GGWCC 1 cut(s) 1558
BaeGI GKGCMC 2 cut(s) 657, 997
BaeI ACNNNNGTAYC 2 cut(s) 1154, 1187
BamHI GGATCC 1 cut(s) 1192
BanI GGYRCC 3 cut(s) 197, 529, 992
BanII GRGCYC 1 cut(s) 937
BbsI GAAGAC 1 cut(s) 1477
Bbv12I GWGCWC 2 cut(s) 783, 1415
BbvI GCAGC 1 cut(s) 442
BccI CCATC 6 cut(s) 11, 311, 389, 983, 1023, 1127
BciT130I CCWGG 3 cut(s) 633, 1061, 1144
BcoDI GTCTC 2 cut(s) 367, 806
BfaI CTAG 2 cut(s) 390, 1233
BfmI CTRYAG 2 cut(s) 456, 912
BfoI RGCGCY 1 cut(s) 1422
BfuAI ACCTGC 2 cut(s) 227, 1321
BglI GCCNNNNNGGC 1 cut(s) 252
BglII AGATCT 1 cut(s) 970
BisI GCNGC 1 cut(s) 456
BlsI GCNGC 1 cut(s) 457
Bme1390I CCNGG 3 cut(s) 633, 1061, 1144
Bme18I GGWCC 1 cut(s) 1558
BmgT120I GGNCC 1 cut(s) 1558
BmiI GGNNCC 5 cut(s) 199, 531, 639, 994, 1194
BmrFI CCNGG 3 cut(s) 633, 1061, 1144
BmsI GCATC 4 cut(s) 46, 499, 727, 1081
BpiI GAAGAC 1 cut(s) 1477
BplI GAGNNNNNCTC 2 cut(s) 1180, 1212
Bpu10I CCTNAGC 1 cut(s) 1517
Bpu14I TTCGAA 2 cut(s) 26, 120
BpuEI CTTGAG 2 cut(s) 1093, 1311
BsaAI YACGTR 1 cut(s) 825
BsaI GGTCTC 1 cut(s) 806
BsaJI CCNNGG 3 cut(s) 556, 632, 1059
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bsc4I CCNNNNNNNGG 2 cut(s) 825, 1381
Bse1I ACTGG 4 cut(s) 687, 726, 1092, 1573
Bse3DI GCAATG 1 cut(s) 678
BseBI CCWGG 3 cut(s) 633, 1061, 1144
BseDI CCNNGG 3 cut(s) 556, 632, 1059
BseGI GGATG 5 cut(s) 61, 322, 742, 994, 1096
BseLI CCNNNNNNNGG 2 cut(s) 825, 1381
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 3 cut(s) 690, 1211, 1531
BseNI ACTGG 4 cut(s) 687, 726, 1092, 1573
BseRI GAGGAG 1 cut(s) 270
BseSI GKGCMC 2 cut(s) 657, 997
BseXI GCAGC 1 cut(s) 442
BseYI CCCAGC 2 cut(s) 605, 1381
BsgI GTGCAG 2 cut(s) 205, 1500
Bsh1236I CGCG 1 cut(s) 1352
BshNI GGYRCC 3 cut(s) 197, 529, 992
BsiHKAI GWGCWC 2 cut(s) 783, 1415
BslFI GGGAC 4 cut(s) 125, 839, 929, 1535
BslI CCNNNNNNNGG 2 cut(s) 825, 1381
BsmAI GTCTC 2 cut(s) 367, 806
BsmFI GGGAC 4 cut(s) 125, 839, 929, 1535
BsmI GAATGC 1 cut(s) 1303
Bso31I GGTCTC 1 cut(s) 806
Bsp119I TTCGAA 2 cut(s) 26, 120
Bsp1286I GDGCHC 5 cut(s) 657, 783, 937, 997, 1415
Bsp143I GATC 4 cut(s) 212, 970, 1100, 1192
BspCNI CTCAG 3 cut(s) 691, 1210, 1530
BspFNI CGCG 1 cut(s) 1352
BspLI GGNNCC 5 cut(s) 199, 531, 639, 994, 1194
BspMAI CTGCAG 1 cut(s) 460
BspMI ACCTGC 2 cut(s) 227, 1321
BspPI GGATC 3 cut(s) 220, 1187, 1200
BspQI GCTCTTC 2 cut(s) 28, 1403
BspT104I TTCGAA 2 cut(s) 26, 120
BspT107I GGYRCC 3 cut(s) 197, 529, 992
BspTNI GGTCTC 1 cut(s) 806
BsrDI GCAATG 1 cut(s) 678
BsrI ACTGG 4 cut(s) 687, 726, 1092, 1573
BssECI CCNNGG 3 cut(s) 556, 632, 1059
BssMI GATC 4 cut(s) 212, 970, 1100, 1192
BssNAI GTATAC 1 cut(s) 401
BssT1I CCWWGG 1 cut(s) 556
Bst1107I GTATAC 1 cut(s) 401
Bst2UI CCWGG 3 cut(s) 633, 1061, 1144
Bst4CI ACNGT 5 cut(s) 174, 652, 816, 916, 1526
Bst6I CTCTTC 7 cut(s) 28, 39, 330, 456, 681, 720, 1403
BstAPI GCANNNNNTGC 1 cut(s) 56
BstBAI YACGTR 1 cut(s) 825
BstBI TTCGAA 2 cut(s) 26, 120
BstC8I GCNNGC 2 cut(s) 196, 438
BstDEI CTNAG 3 cut(s) 699, 1197, 1517
BstF5I GGATG 5 cut(s) 61, 322, 742, 994, 1096
BstFNI CGCG 1 cut(s) 1352
BstH2I RGCGCY 1 cut(s) 1422
BstHHI GCGC 3 cut(s) 1025, 1354, 1421
BstKTI GATC 4 cut(s) 215, 973, 1103, 1195
BstMAI GTCTC 2 cut(s) 367, 806
BstMBI GATC 4 cut(s) 212, 970, 1100, 1192
BstMWI GCNNNNNNNGC 6 cut(s) 56, 252, 437, 803, 1008, 1351
BstNI CCWGG 3 cut(s) 633, 1061, 1144
BstNSI RCATGY 1 cut(s) 1230
BstSCI CCNGG 3 cut(s) 631, 1059, 1142
BstSFI CTRYAG 2 cut(s) 456, 912
BstSLI GKGCMC 2 cut(s) 657, 997
BstUI CGCG 1 cut(s) 1352
BstV1I GCAGC 1 cut(s) 442
BstV2I GAAGAC 1 cut(s) 1477
BstX2I RGATCY 3 cut(s) 212, 970, 1192
BstYI RGATCY 3 cut(s) 212, 970, 1192
BstZ17I GTATAC 1 cut(s) 401
BtgZI GCGATG 1 cut(s) 30
BtsCI GGATG 5 cut(s) 61, 322, 742, 994, 1096
BtsIMutI CAGTG 5 cut(s) 812, 1085, 1191, 1287, 1531
BveI ACCTGC 2 cut(s) 227, 1321
Cac8I GCNNGC 2 cut(s) 196, 438
CaiI CAGNNNCTG 3 cut(s) 1087, 1165, 1421
CfoI GCGC 3 cut(s) 1025, 1354, 1421
Cfr13I GGNCC 1 cut(s) 1558
Csp6I GTAC 5 cut(s) 680, 710, 725, 1118, 1268
CspCI CAANNNNNGTGG 2 cut(s) 501, 536
CviAII CATG 7 cut(s) 188, 571, 1012, 1109, 1227, 1238, 1341
CviQI GTAC 5 cut(s) 680, 710, 725, 1118, 1268
DdeI CTNAG 3 cut(s) 699, 1197, 1517
DpnI GATC 4 cut(s) 214, 972, 1102, 1194
DpnII GATC 4 cut(s) 212, 970, 1100, 1192
Eam1104I CTCTTC 7 cut(s) 28, 39, 330, 456, 681, 720, 1403
EarI CTCTTC 7 cut(s) 28, 39, 330, 456, 681, 720, 1403
Eco130I CCWWGG 1 cut(s) 556
Eco24I GRGCYC 1 cut(s) 937
Eco31I GGTCTC 1 cut(s) 806
Eco47I GGWCC 1 cut(s) 1558
Eco57I CTGAAG 2 cut(s) 815, 987
EcoO109I RGGNCCY 1 cut(s) 1558
EcoRI GAATTC 1 cut(s) 1150
EcoRII CCWGG 3 cut(s) 631, 1059, 1142
EcoT14I CCWWGG 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 937
ErhI CCWWGG 1 cut(s) 556
FaeI CATG 7 cut(s) 191, 574, 1015, 1112, 1230, 1241, 1344
FaqI GGGAC 4 cut(s) 125, 839, 929, 1535
FatI CATG 7 cut(s) 187, 570, 1011, 1108, 1226, 1237, 1340
FblI GTMKAC 2 cut(s) 400, 1245
Fnu4HI GCNGC 1 cut(s) 456
FokI GGATG 5 cut(s) 68, 329, 749, 1001, 1103
FriOI GRGCYC 1 cut(s) 937
Fsp4HI GCNGC 1 cut(s) 456
FspBI CTAG 2 cut(s) 390, 1233
FspI TGCGCA 1 cut(s) 1024
GlaI GCGC 3 cut(s) 1024, 1353, 1420
GluI GCNGC 1 cut(s) 456
GsaI CCCAGC 2 cut(s) 609, 1385
HaeII RGCGCY 1 cut(s) 1422
HhaI GCGC 3 cut(s) 1025, 1354, 1421
Hin1II CATG 7 cut(s) 191, 574, 1015, 1112, 1230, 1241, 1344
Hin6I GCGC 3 cut(s) 1023, 1352, 1419
HinP1I GCGC 3 cut(s) 1023, 1352, 1419
HinfI GANTC 5 cut(s) 233, 577, 621, 1055, 1322
HphI GGTGA 4 cut(s) 1064, 1397, 1412, 1601
Hpy166II GTNNAC 5 cut(s) 325, 401, 680, 923, 1246
Hpy188I TCNGA 6 cut(s) 133, 700, 834, 1212, 1463, 1532
Hpy188III TCNNGA 7 cut(s) 299, 445, 848, 1072, 1098, 1252, 1609
Hpy8I GTNNAC 5 cut(s) 325, 401, 680, 923, 1246
HpyAV CCTTC 7 cut(s) 235, 420, 451, 607, 685, 767, 1249
HpyCH4III ACNGT 5 cut(s) 174, 652, 816, 916, 1526
HpyCH4IV ACGT 1 cut(s) 824
HpyCH4V TGCA 5 cut(s) 222, 458, 512, 812, 1481
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 252, 437, 803, 1008, 1351
HpyF3I CTNAG 3 cut(s) 699, 1197, 1517
HpySE526I ACGT 1 cut(s) 824
Hsp92II CATG 7 cut(s) 191, 574, 1015, 1112, 1230, 1241, 1344
HspAI GCGC 3 cut(s) 1023, 1352, 1419
Kzo9I GATC 4 cut(s) 212, 970, 1100, 1192
LguI GCTCTTC 2 cut(s) 28, 1403
LmnI GCTCC 2 cut(s) 596, 778
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 4 cut(s) 46, 499, 727, 1081
MaeI CTAG 2 cut(s) 390, 1233
MaeII ACGT 1 cut(s) 824
MaeIII GTNAC 3 cut(s) 1052, 1385, 1564
MalI GATC 4 cut(s) 214, 972, 1102, 1194
MboI GATC 4 cut(s) 212, 970, 1100, 1192
MfeI CAATTG 1 cut(s) 600
MflI RGATCY 3 cut(s) 212, 970, 1192
MhlI GDGCHC 5 cut(s) 657, 783, 937, 997, 1415
MluCI AATT 8 cut(s) 165, 341, 600, 742, 939, 1150, 1174, 1601
MlyI GAGTC 1 cut(s) 1049
MroXI GAANNNNTTC 2 cut(s) 306, 755
MseI TTAA 6 cut(s) 71, 525, 792, 1047, 1173, 1604
MslI CAYNNNNRTG 2 cut(s) 786, 1280
MspR9I CCNGG 3 cut(s) 633, 1061, 1144
MunI CAATTG 1 cut(s) 600
Mva1269I GAATGC 1 cut(s) 1303
MvaI CCWGG 3 cut(s) 633, 1061, 1144
MvnI CGCG 1 cut(s) 1352
MwoI GCNNNNNNNGC 6 cut(s) 56, 252, 437, 803, 1008, 1351
NdeII GATC 4 cut(s) 212, 970, 1100, 1192
NlaIII CATG 7 cut(s) 191, 574, 1015, 1112, 1230, 1241, 1344
NlaIV GGNNCC 5 cut(s) 199, 531, 639, 994, 1194
NmuCI GTSAC 2 cut(s) 1052, 1385
NsbI TGCGCA 1 cut(s) 1024
NspI RCATGY 1 cut(s) 1230
NspV TTCGAA 2 cut(s) 26, 120
OliI CACNNNNGTG 1 cut(s) 1280
PciI ACATGT 1 cut(s) 1226
PciSI GCTCTTC 2 cut(s) 28, 1403
PctI GAATGC 1 cut(s) 1303
PdmI GAANNNNTTC 2 cut(s) 306, 755
PfeI GAWTC 4 cut(s) 233, 577, 621, 1322
PflFI GACNNNGTC 1 cut(s) 1526
PfoI TCCNGGA 1 cut(s) 1142
PkrI GCNGC 1 cut(s) 457
PleI GAGTC 1 cut(s) 1049
PpsI GAGTC 1 cut(s) 1049
Ppu21I YACGTR 1 cut(s) 825
PpuMI RGGWCCY 1 cut(s) 1558
PscI ACATGT 1 cut(s) 1226
PshBI ATTAAT 1 cut(s) 1604
Psp5II RGGWCCY 1 cut(s) 1558
Psp6I CCWGG 3 cut(s) 631, 1059, 1142
PspFI CCCAGC 2 cut(s) 605, 1381
PspGI CCWGG 3 cut(s) 631, 1059, 1142
PspN4I GGNNCC 5 cut(s) 199, 531, 639, 994, 1194
PspPI GGNCC 1 cut(s) 1558
PspPPI RGGWCCY 1 cut(s) 1558
PstI CTGCAG 1 cut(s) 460
PstNI CAGNNNCTG 3 cut(s) 1087, 1165, 1421
PsuI RGATCY 3 cut(s) 212, 970, 1192
PsyI GACNNNGTC 1 cut(s) 1526
RsaI GTAC 5 cut(s) 681, 711, 726, 1119, 1269
RsaNI GTAC 5 cut(s) 680, 710, 725, 1118, 1268
RseI CAYNNNNRTG 2 cut(s) 786, 1280
SapI GCTCTTC 2 cut(s) 28, 1403
SaqAI TTAA 6 cut(s) 71, 525, 792, 1047, 1173, 1604
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 4 cut(s) 212, 970, 1100, 1192
Sau96I GGNCC 1 cut(s) 1558
SchI GAGTC 1 cut(s) 1049
ScrFI CCNGG 3 cut(s) 633, 1061, 1144
SduI GDGCHC 5 cut(s) 657, 783, 937, 997, 1415
SfaNI GCATC 4 cut(s) 46, 499, 727, 1081
SfcI CTRYAG 2 cut(s) 456, 912
SfuI TTCGAA 2 cut(s) 26, 120
SinI GGWCC 1 cut(s) 1558
SmiMI CAYNNNNRTG 2 cut(s) 786, 1280
SmlI CTYRAG 2 cut(s) 1072, 1326
SmoI CTYRAG 2 cut(s) 1072, 1326
Sse9I AATT 8 cut(s) 165, 341, 600, 742, 939, 1150, 1174, 1601
SspI AATATT 2 cut(s) 147, 240
SspMI CTAG 2 cut(s) 390, 1233
StyD4I CCNGG 3 cut(s) 631, 1059, 1142
StyI CCWWGG 1 cut(s) 556
TaaI ACNGT 5 cut(s) 174, 652, 816, 916, 1526
TaiI ACGT 1 cut(s) 827
TaqI TCGA 3 cut(s) 26, 120, 298
TasI AATT 8 cut(s) 165, 341, 600, 742, 939, 1150, 1174, 1601
TatI WGTACW 1 cut(s) 679
TfiI GAWTC 4 cut(s) 233, 577, 621, 1322
Tru1I TTAA 6 cut(s) 71, 525, 792, 1047, 1173, 1604
Tru9I TTAA 6 cut(s) 71, 525, 792, 1047, 1173, 1604
TscAI CASTG 5 cut(s) 819, 1092, 1191, 1287, 1531
TseFI GTSAC 2 cut(s) 1052, 1385
TseI GCWGC 1 cut(s) 455
Tsp45I GTSAC 2 cut(s) 1052, 1385
TspDTI ATGAA 6 cut(s) 57, 176, 681, 883, 972, 1235
TspGWI ACGGA 1 cut(s) 1463
TspRI CASTG 5 cut(s) 819, 1092, 1191, 1287, 1531
Tth111I GACNNNGTC 1 cut(s) 1526
VpaK11BI GGWCC 1 cut(s) 1558
VspI ATTAAT 1 cut(s) 1604
XapI RAATTY 2 cut(s) 341, 1150
XceI RCATGY 1 cut(s) 1230
XmiI GTMKAC 2 cut(s) 400, 1245
XmnI GAANNNNTTC 2 cut(s) 306, 755
XspI CTAG 2 cut(s) 390, 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.