Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004132

Physical Location & Seq

Genomic Coordinates Forward (+)

58730515 .. 58735248

Gene Structure 4734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG350500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGCCACAAAATAGCAATACAAACCCAATCACCTCACATTCGGATTCAGATCCCAACACCAACCAACTCGCCATGGTTCAAGATGGCGACGCGTCTTCGCAAACTCCATACGAGGCGGCGCTGGAGGCTCTCTCCTCCTTGATCACAAAACGCAGCCGCGCCGATAAGAGCAACAAAGGCGACCGCTTCGACCTCCTCTTTGACTATCTCAGAATTCTGGAATTAGAGGAGCCGATTGCGCAGATGAAGATCATTCATGTGGCTGGTACCAAAGGAAAGGGATCCACATGCACCTTCTCTGAATCAATACTACGTCATTGTGGCTTCCGCACTGGACTTTTCACATCTCCTCATCTGATCGATGTTCGCGAAAGATTTCGATTGGATGGAGTGGACATCAGTGAAGAGAAATTCTTGGAGTATTTCTGGTGGTCTTTTAATAGACTAAAGGAAAAAGCTAATGATGATATACCAATGCCTACCTACTTTCGCTTCCTTGCCTTACTTGCCTTCAAGATATTTGCAGGAGAGAAGGTAGATGTTGCTATTTTAGAGGTCGGGTTAGGCGGAAAGTTTGACGCAACAAATGTGGTTCAGGCACCCGTTGTTTGTGGCATATCATCCCTTGGATATGATCACATGGAGATTCTTGGATATACTCTGGGAGCAATTGCTGGGGAGAAGGCTGGAATCTTCAAGCATGGGGTTCCTGCCTTCACTGTGCCTCAACCTGATGAAGCAATGCGGGTACTTGAAGAGAAAGCTTCTCAATTGGATGTACCTCTTCAAACAGTACCACCAGTGGATACTAATTTGCTGAATGGCTTAAAACTTGGGCTTGAAGGTGAGCACCAATATGTTAATGCTGGCCTTGCTGTTGCACTGTGCTCTACATGGCTTCAAAGGACCGGTCATCTTGACATCACACACCCAGAAAATACTACCTCTCTGCCGGAGCAGTTTATAAAAGGACTAACGGCTACTGTCAGTTTACAAGGCCGAGCTCAAATTGTTCCAGATCACTATATTAACAATGAAAGCGCAGGAGATCTGACATTCTATTTAGATGGCGCCCATAGCCCCGAAAGCATGGAAATATGTGCAAGATGGTTTTCTCTTTCCACTAAAGAGAATTCTCAGGAAAAGACGCTGGATTCCTCTAGATCACATGACTTCGTACAAAGGCATACAGATGTGGAAGCCAAGAAGAACTCACAGATACTGCTGTTTAATTGTATGTCAGTGAGGGATCCTCAATTGCTTCTTCCGAACCTGATGAAAACATGTGCTAGTCATGGTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010449 GO:0016049 GO:0016053 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019438 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046900 GO:0046901 GO:0048364 GO:0048468 GO:0048469 GO:0048507 GO:0048532 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051186 GO:0051188 GO:0060560 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1904961 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko01523 map00790 map01100 map01523

Pfam Domains

Protein Families

Mur_ligase_M

Protein Analysis

434

Amino Acids

48.09

Weight (kDa)

5.48

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55630 AT3G55630 AT3G55630 AT3G55630 AT3G55630 AT3G55630 AT3G55630 AT5G05980 AT5G05980
fragaria_vesca	FvH4_7g23490 FvH4_7g23490 FvH4_7g23490 FvH4_7g23490 FvH4_7g23490 FvH4_7g23490 FvH4_7g23490 FvH4_7g23490
malus_domestica	MD01G1140600.v1.1 MD07G1204900.v1.1
prunus_persica	Prupe.2G241100_v2.0.a1 Prupe.2G241100_v2.0.a1
pyrus_communis	pycom01g16120 pycom07g19140
rosa_chinensis	RchiOBHm_Chr1g0368621
rosa_laevigata	RLG00000027200
rosa_multiflora	Rmu_sc0011394.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288400
rosa_rugosa	Rorug01G0343200
rosa_samantha	Rh1AG350500 Rh1BG313800 Rh1CG328400 Rh1DG345200
rosa_wichuraiana	Rw0G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	965
Acc16I	TGCGCA	1 cut(s)	240
Acc65I	GGTACC	1 cut(s)	266
AccB1I	GGYRCC	3 cut(s)	266, 598, 1070
AccII	CGCG	3 cut(s)	92, 159, 369
AciI	CCGC	6 cut(s)	116, 157, 184, 328, 567, 745
AclWI	GGATC	5 cut(s)	44, 276, 289, 1244, 1257
AcsI	RAATTY	3 cut(s)	213, 410, 1132
AcyI	GRCGYC	1 cut(s)	1071
AfaI	GTAC	5 cut(s)	268, 750, 780, 795, 1179
AflIII	ACRYGT	2 cut(s)	90, 1283
AgeI	ACCGGT	1 cut(s)	908
AgsI	TTSAA	7 cut(s)	80, 514, 697, 755, 788, 842, 902
AluBI	AGCT	3 cut(s)	458, 764, 1004
AluI	AGCT	3 cut(s)	458, 764, 1004
Alw21I	GWGCWC	3 cut(s)	852, 890, 1006
AlwI	GGATC	5 cut(s)	44, 276, 289, 1244, 1257
AlwNI	CAGNNNCTG	1 cut(s)	1222
AoxI	GGCC	2 cut(s)	868, 997
ApeKI	GCWGC	1 cut(s)	153
ApoI	RAATTY	3 cut(s)	213, 410, 1132
ArsI	GACNNNNNNTTYG	4 cut(s)	182, 214, 895, 927
AsiGI	ACCGGT	1 cut(s)	908
Asp700I	GAANNNNTTC	1 cut(s)	375
Asp718I	GGTACC	1 cut(s)	266
AspLEI	GCGC	5 cut(s)	121, 161, 241, 1043, 1073
AspS9I	GGNCC	1 cut(s)	906
AsuHPI	GGTGA	2 cut(s)	22, 857
AvaII	GGWCC	1 cut(s)	906
BaeI	ACNNNNGTAYC	2 cut(s)	1211, 1244
BamHI	GGATCC	2 cut(s)	281, 1249
BanI	GGYRCC	3 cut(s)	266, 598, 1070
BanII	GRGCYC	1 cut(s)	1006
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	3 cut(s)	852, 890, 1006
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	4 cut(s)	77, 380, 1061, 1101
BceAI	ACGGC	1 cut(s)	993
BciVI	GTATCC	1 cut(s)	799
BclI	TGATCA	2 cut(s)	141, 634
BfaI	CTAG	2 cut(s)	1161, 1290
BfoI	RGCGCY	2 cut(s)	122, 1074
BfuI	GTATCC	1 cut(s)	799
BglII	AGATCT	1 cut(s)	1048
BisI	GCNGC	3 cut(s)	117, 154, 157
BlsI	GCNGC	3 cut(s)	118, 155, 158
Bme18I	GGWCC	1 cut(s)	906
BmgT120I	GGNCC	1 cut(s)	906
BmiI	GGNNCC	7 cut(s)	231, 268, 283, 600, 708, 1072, 1251
BpiI	GAAGAC	1 cut(s)	87
BplI	GAGNNNNNCTC	4 cut(s)	116, 148, 1237, 1269
BpmI	CTGGAG	1 cut(s)	143
Bsa29I	ATCGAT	1 cut(s)	360
BsaBI	GATNNNNATC	2 cut(s)	48, 248
BsaHI	GRCGYC	1 cut(s)	1071
BsaJI	CCNNGG	2 cut(s)	72, 625
BsaWI	WCCGGW	1 cut(s)	908
BsaXI	ACNNNNNCTCC	2 cut(s)	519, 549
Bse118I	RCCGGY	1 cut(s)	908
Bse1I	ACTGG	2 cut(s)	337, 800
Bse3DI	GCAATG	1 cut(s)	747
Bse8I	GATNNNNATC	2 cut(s)	48, 248
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	72, 625
BseGI	GGATG	3 cut(s)	391, 620, 781
BseJI	GATNNNNATC	2 cut(s)	48, 248
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	2 cut(s)	223, 1151
BseNI	ACTGG	2 cut(s)	337, 800
BseRI	GAGGAG	4 cut(s)	124, 185, 242, 339
BseXI	GCAGC	1 cut(s)	165
BseYI	CCCAGC	1 cut(s)	674
Bsh1236I	CGCG	3 cut(s)	92, 159, 369
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	2 cut(s)	870, 999
BshNI	GGYRCC	3 cut(s)	266, 598, 1070
BshTI	ACCGGT	1 cut(s)	908
BshVI	ATCGAT	1 cut(s)	360
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	3 cut(s)	852, 890, 1006
BsiSI	CCGG	2 cut(s)	909, 953
BsnI	GGCC	2 cut(s)	870, 999
Bsp1286I	GDGCHC	3 cut(s)	852, 890, 1006
Bsp19I	CCATGG	1 cut(s)	72
Bsp68I	TCGCGA	1 cut(s)	369
BspACI	CCGC	6 cut(s)	116, 157, 184, 328, 567, 745
BspANI	GGCC	2 cut(s)	870, 999
BspCNI	CTCAG	2 cut(s)	222, 1150
BspDI	ATCGAT	1 cut(s)	360
BspFNI	CGCG	3 cut(s)	92, 159, 369
BspLI	GGNNCC	7 cut(s)	231, 268, 283, 600, 708, 1072, 1251
BspPI	GGATC	5 cut(s)	44, 276, 289, 1244, 1257
BspT107I	GGYRCC	3 cut(s)	266, 598, 1070
BsrDI	GCAATG	1 cut(s)	747
BsrFI	RCCGGY	1 cut(s)	908
BsrI	ACTGG	2 cut(s)	337, 800
BssAI	RCCGGY	1 cut(s)	908
BssECI	CCNNGG	2 cut(s)	72, 625
BssNI	GRCGYC	1 cut(s)	1071
BssT1I	CCWWGG	2 cut(s)	72, 625
Bst4CI	ACNGT	4 cut(s)	721, 793, 885, 985
Bst6I	CTCTTC	3 cut(s)	399, 750, 789
BstACI	GRCGYC	1 cut(s)	1071
BstC8I	GCNNGC	1 cut(s)	868
BstDEI	CTNAG	2 cut(s)	209, 1137
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	3 cut(s)	391, 620, 781
BstFNI	CGCG	3 cut(s)	92, 159, 369
BstH2I	RGCGCY	2 cut(s)	122, 1074
BstHHI	GCGC	5 cut(s)	121, 161, 241, 1043, 1073
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	7 cut(s)	125, 177, 238, 506, 872, 1077, 1086
BstNSI	RCATGY	2 cut(s)	291, 1287
BstUI	CGCG	3 cut(s)	92, 159, 369
BstV1I	GCAGC	1 cut(s)	165
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	4 cut(s)	49, 281, 1048, 1249
BstYI	RGATCY	4 cut(s)	49, 281, 1048, 1249
Bsu15I	ATCGAT	1 cut(s)	360
BsuI	GTATCC	1 cut(s)	799
BsuRI	GGCC	2 cut(s)	870, 999
BsuTUI	ATCGAT	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	3 cut(s)	391, 620, 781
BtsIMutI	CAGTG	6 cut(s)	330, 406, 717, 807, 881, 1248
BtuMI	TCGCGA	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	868
CaiI	CAGNNNCTG	1 cut(s)	1222
CfoI	GCGC	5 cut(s)	121, 161, 241, 1043, 1073
Cfr10I	RCCGGY	1 cut(s)	908
Cfr13I	GGNCC	1 cut(s)	906
ClaI	ATCGAT	1 cut(s)	360
CseI	GACGC	4 cut(s)	81, 98, 587, 1156
Csp6I	GTAC	5 cut(s)	267, 749, 779, 794, 1178
CspAI	ACCGGT	1 cut(s)	908
CspCI	CAANNNNNGTGG	2 cut(s)	570, 605
CviQI	GTAC	5 cut(s)	267, 749, 779, 794, 1178
DdeI	CTNAG	2 cut(s)	209, 1137
DinI	GGCGCC	1 cut(s)	1072
Eam1104I	CTCTTC	3 cut(s)	399, 750, 789
EarI	CTCTTC	3 cut(s)	399, 750, 789
EciI	GGCGGA	1 cut(s)	582
Ecl136II	GAGCTC	1 cut(s)	1004
Eco130I	CCWWGG	2 cut(s)	72, 625
Eco24I	GRGCYC	1 cut(s)	1006
Eco47I	GGWCC	1 cut(s)	906
Eco53kI	GAGCTC	1 cut(s)	1004
EcoICRI	GAGCTC	1 cut(s)	1004
EcoRI	GAATTC	2 cut(s)	213, 1132
EcoT14I	CCWWGG	2 cut(s)	72, 625
EcoT38I	GRGCYC	1 cut(s)	1006
EgeI	GGCGCC	1 cut(s)	1072
EheI	GGCGCC	1 cut(s)	1072
ErhI	CCWWGG	2 cut(s)	72, 625
FauI	CCCGC	1 cut(s)	738
FbaI	TGATCA	2 cut(s)	141, 634
Fnu4HI	GCNGC	3 cut(s)	117, 154, 157
FokI	GGATG	3 cut(s)	398, 607, 788
FriOI	GRGCYC	1 cut(s)	1006
Fsp4HI	GCNGC	3 cut(s)	117, 154, 157
FspBI	CTAG	2 cut(s)	1161, 1290
FspI	TGCGCA	1 cut(s)	240
GlaI	GCGC	5 cut(s)	120, 160, 240, 1042, 1072
GluI	GCNGC	3 cut(s)	117, 154, 157
GsaI	CCCAGC	1 cut(s)	678
GsuI	CTGGAG	1 cut(s)	143
HaeII	RGCGCY	2 cut(s)	122, 1074
HaeIII	GGCC	2 cut(s)	870, 999
HapII	CCGG	2 cut(s)	909, 953
HgaI	GACGC	4 cut(s)	81, 98, 587, 1156
HhaI	GCGC	5 cut(s)	121, 161, 241, 1043, 1073
Hin1I	GRCGYC	1 cut(s)	1071
Hin6I	GCGC	5 cut(s)	119, 159, 239, 1041, 1071
HinP1I	GCGC	5 cut(s)	119, 159, 239, 1041, 1071
HindIII	AAGCTT	1 cut(s)	762
HinfI	GANTC	5 cut(s)	44, 302, 646, 690, 1154
HpaII	CCGG	2 cut(s)	909, 953
HphI	GGTGA	2 cut(s)	22, 857
Hpy166II	GTNNAC	2 cut(s)	394, 992
Hpy188I	TCNGA	7 cut(s)	43, 49, 212, 301, 357, 1053, 1269
Hpy188III	TCNNGA	8 cut(s)	80, 218, 368, 514, 917, 1016, 1139, 1161
Hpy8I	GTNNAC	2 cut(s)	394, 992
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	6 cut(s)	304, 520, 526, 676, 724, 836
HpyCH4III	ACNGT	4 cut(s)	721, 793, 885, 985
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	4 cut(s)	291, 524, 881, 1103
HpyF10VI	GCNNNNNNNGC	7 cut(s)	125, 177, 238, 506, 872, 1077, 1086
HpyF3I	CTNAG	2 cut(s)	209, 1137
HpySE526I	ACGT	1 cut(s)	313
Hsp92I	GRCGYC	1 cut(s)	1071
HspAI	GCGC	5 cut(s)	119, 159, 239, 1041, 1071
KasI	GGCGCC	1 cut(s)	1070
KpnI	GGTACC	1 cut(s)	270
Ksp22I	TGATCA	2 cut(s)	141, 634
LmnI	GCTCC	3 cut(s)	229, 665, 955
Lsp1109I	GCAGC	1 cut(s)	165
MaeI	CTAG	2 cut(s)	1161, 1290
MaeII	ACGT	1 cut(s)	313
MboII	GAAGA	8 cut(s)	87, 259, 416, 685, 767, 776, 1219, 1256
MfeI	CAATTG	3 cut(s)	669, 770, 1256
MflI	RGATCY	4 cut(s)	49, 281, 1048, 1249
MhlI	GDGCHC	3 cut(s)	852, 890, 1006
MluI	ACGCGT	1 cut(s)	90
Mly113I	GGCGCC	1 cut(s)	1071
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	5 cut(s)	438, 827, 861, 1029, 1230
MslI	CAYNNNNRTG	3 cut(s)	257, 855, 1191
MspI	CCGG	2 cut(s)	909, 953
MunI	CAATTG	3 cut(s)	669, 770, 1256
MvnI	CGCG	3 cut(s)	92, 159, 369
MwoI	GCNNNNNNNGC	7 cut(s)	125, 177, 238, 506, 872, 1077, 1086
NarI	GGCGCC	1 cut(s)	1071
NcoI	CCATGG	1 cut(s)	72
NlaIV	GGNNCC	7 cut(s)	231, 268, 283, 600, 708, 1072, 1251
NmeAIII	GCCGAG	1 cut(s)	1025
NruI	TCGCGA	1 cut(s)	369
NsbI	TGCGCA	1 cut(s)	240
NspI	RCATGY	2 cut(s)	291, 1287
PciI	ACATGT	1 cut(s)	1283
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	5 cut(s)	44, 302, 646, 690, 1154
PinAI	ACCGGT	1 cut(s)	908
PkrI	GCNGC	3 cut(s)	118, 155, 158
PluTI	GGCGCC	1 cut(s)	1074
PscI	ACATGT	1 cut(s)	1283
PsiI	TTATAA	1 cut(s)	965
Psp124BI	GAGCTC	1 cut(s)	1006
PspFI	CCCAGC	1 cut(s)	674
PspN4I	GGNNCC	7 cut(s)	231, 268, 283, 600, 708, 1072, 1251
PspPI	GGNCC	1 cut(s)	906
PstNI	CAGNNNCTG	1 cut(s)	1222
PsuI	RGATCY	4 cut(s)	49, 281, 1048, 1249
RruI	TCGCGA	1 cut(s)	369
RsaI	GTAC	5 cut(s)	268, 750, 780, 795, 1179
RsaNI	GTAC	5 cut(s)	267, 749, 779, 794, 1178
RseI	CAYNNNNRTG	3 cut(s)	257, 855, 1191
SacI	GAGCTC	1 cut(s)	1006
SaqAI	TTAA	5 cut(s)	438, 827, 861, 1029, 1230
SatI	GCNGC	3 cut(s)	117, 154, 157
Sau96I	GGNCC	1 cut(s)	906
SduI	GDGCHC	3 cut(s)	852, 890, 1006
SfoI	GGCGCC	1 cut(s)	1072
SinI	GGWCC	1 cut(s)	906
SmiMI	CAYNNNNRTG	3 cut(s)	257, 855, 1191
SsiI	CCGC	6 cut(s)	116, 157, 184, 328, 567, 745
SspDI	GGCGCC	1 cut(s)	1070
SspMI	CTAG	2 cut(s)	1161, 1290
SstI	GAGCTC	1 cut(s)	1006
StyI	CCWWGG	2 cut(s)	72, 625
TaaI	ACNGT	4 cut(s)	721, 793, 885, 985
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	3 cut(s)	189, 360, 379
TauI	GCSGC	2 cut(s)	119, 159
TfiI	GAWTC	5 cut(s)	44, 302, 646, 690, 1154
Tru1I	TTAA	5 cut(s)	438, 827, 861, 1029, 1230
Tru9I	TTAA	5 cut(s)	438, 827, 861, 1029, 1230
TscAI	CASTG	6 cut(s)	337, 406, 724, 807, 888, 1248
TseI	GCWGC	1 cut(s)	153
TspDTI	ATGAA	5 cut(s)	245, 260, 750, 1050, 1292
TspRI	CASTG	6 cut(s)	337, 406, 724, 807, 888, 1248
VpaK11BI	GGWCC	1 cut(s)	906
XapI	RAATTY	3 cut(s)	213, 410, 1132
XbaI	TCTAGA	1 cut(s)	1160
XceI	RCATGY	2 cut(s)	291, 1287
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	2 cut(s)	1161, 1290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.