Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004132

Physical Location & Seq

Genomic Coordinates Reverse (-)

9230225 .. 9234900

Gene Structure 4676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00288400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAGATTCTTGGATATACTCTGGGAGCAATTGCTGGGGAGAAGGCTGGAATCTTCAAGCATGGGGTTCCTGCCTTCACTGTGCCTCAACCTGATGAAGCAATGCGGGTACTTGAAGAGAAAGCTTCTCAATTGGATGTACCTCTTCAAACAGTACCACCAGTGGATGCTAATTTGCTGAATGGCTTAAAACTTGGGCTTGAAGGTGAGCACCAATATGTTAATGCTGGCCTTGCTGTTGCACTGTGCTCTACATGGCTTCAAAGGACTGGTCATCTTGACATCACACACCCAGAAAATACTACCTCTCTGCCGGAGCAGTTTATAAAAGGACTAACGGCTACTGTCAGTTTACAAGGCCGAGCTCAAATTGTTCCAGATCACTATATTAACAATGAAAGCGCAGGAGATCTGACATTCTATTTAGATGGTGCCCATAGCCCCGAAAGCATGGAAATATGTGCAAGATGGTTTTCTCTTTCCACTAAAGAGAATTCTCAGGAAAAGACGCTGGATTCCTCTAGATCACATGACTTCGTACAAAGGCATACAGATGTGGAAGCCAAGAACTCACAGATACTGCTGTTTAATTGTATGTCAGTGAGGGATCCTCAATTGCTTCTTCCGAACCTGATGAAAACATGTGCTAGTCATGGTGTCTACTTCAAGAAGGCGCTGTTTGTACCAAACACTTCAGTGTATCACAAGGTTGGTTCACATTCCTTACCTCCCACTGATCCTCAAGTTGATTTGTCGTGGCAATTCTCTCTTCAGAGAGTATGGGAAAATCTAATGGGAAATAAAGGAGGTGATGATAGGATCCCAGATACTCTTCCTGAAGAATTAAGAGATGATGTGGAAATGGCTGTCAAAAATTGTGAAAATAGTGCAGTTTTTTCCTCACTCCCATCAGCTATAAAGTGGCTCAGGGACAGTGTCCGACATAATCAATCTGCTCGTTTTCAGGTCCTTGTAACTGGGTCGCTACATCTTGTTGGTGATGTGTTGAGATTAGTCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010449 GO:0016049 GO:0016053 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019438 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046900 GO:0046901 GO:0048364 GO:0048468 GO:0048469 GO:0048507 GO:0048532 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051186 GO:0051188 GO:0060560 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1904961 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko01523 map00790 map01100 map01523

Pfam Domains

Protein Families

Mur_ligase_M

Protein Analysis

341

Amino Acids

37.79

Weight (kDa)

5.8

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55630 AT3G55630 AT3G55630 AT3G55630 AT3G55630 AT3G55630 AT3G55630 AT5G05980 AT5G05980
fragaria_vesca	FvH4_7g23490 FvH4_7g23490 FvH4_7g23490 FvH4_7g23490 FvH4_7g23490 FvH4_7g23490 FvH4_7g23490 FvH4_7g23490
malus_domestica	MD01G1140600.v1.1 MD07G1204900.v1.1
prunus_persica	Prupe.2G241100_v2.0.a1 Prupe.2G241100_v2.0.a1
pyrus_communis	pycom01g16120 pycom07g19140
rosa_chinensis	RchiOBHm_Chr1g0368621
rosa_laevigata	RLG00000027200
rosa_multiflora	Rmu_sc0011394.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288400
rosa_rugosa	Rorug01G0343200
rosa_samantha	Rh1AG350500 Rh1BG313800 Rh1CG328400 Rh1DG345200
rosa_wichuraiana	Rw0G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
AccB1I	GGYRCC	1 cut(s)	431
AccI	GTMKAC	1 cut(s)	660
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	5 cut(s)	602, 615, 731, 814, 827
AcsI	RAATTY	1 cut(s)	493
AcuI	CTGAAG	3 cut(s)	678, 755, 858
AfaI	GTAC	5 cut(s)	111, 141, 156, 540, 684
AflIII	ACRYGT	1 cut(s)	641
AgsI	TTSAA	6 cut(s)	58, 116, 149, 203, 263, 667
AleI	CACNNNNGTG	1 cut(s)	695
AluBI	AGCT	3 cut(s)	125, 365, 914
AluI	AGCT	3 cut(s)	125, 365, 914
Alw21I	GWGCWC	3 cut(s)	213, 251, 367
AlwI	GGATC	5 cut(s)	602, 615, 731, 814, 827
AlwNI	CAGNNNCTG	1 cut(s)	580
AoxI	GGCC	2 cut(s)	229, 358
ApoI	RAATTY	1 cut(s)	493
ArsI	GACNNNNNNTTYG	2 cut(s)	256, 288
AspLEI	GCGC	2 cut(s)	404, 676
AspS9I	GGNCC	1 cut(s)	967
AsuHPI	GGTGA	3 cut(s)	218, 821, 1010
AvaII	GGWCC	1 cut(s)	967
BaeGI	GKGCMC	1 cut(s)	436
BaeI	ACNNNNGTAYC	2 cut(s)	569, 602
BamHI	GGATCC	2 cut(s)	607, 819
BanI	GGYRCC	1 cut(s)	431
BanII	GRGCYC	1 cut(s)	367
Bbv12I	GWGCWC	3 cut(s)	213, 251, 367
BccI	CCATC	3 cut(s)	422, 462, 916
BceAI	ACGGC	1 cut(s)	354
BfaI	CTAG	2 cut(s)	522, 648
BfoI	RGCGCY	1 cut(s)	677
BglII	AGATCT	1 cut(s)	409
Bme18I	GGWCC	1 cut(s)	967
BmgT120I	GGNCC	1 cut(s)	967
BmiI	GGNNCC	4 cut(s)	69, 433, 609, 821
BmrI	ACTGGG	1 cut(s)	987
BmsI	GCATC	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	987
BplI	GAGNNNNNCTC	2 cut(s)	595, 627
Bpu10I	CCTNAGC	1 cut(s)	926
BpuEI	CTTGAG	1 cut(s)	726
Bse1I	ACTGG	3 cut(s)	161, 274, 982
Bse3DI	GCAATG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	142, 172
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	2 cut(s)	512, 940
BseNI	ACTGG	3 cut(s)	161, 274, 982
BseSI	GKGCMC	1 cut(s)	436
BseYI	CCCAGC	1 cut(s)	35
BsgI	GTGCAG	1 cut(s)	909
BshFI	GGCC	2 cut(s)	231, 360
BshNI	GGYRCC	1 cut(s)	431
BsiHKAI	GWGCWC	3 cut(s)	213, 251, 367
BsiSI	CCGG	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	944
BsmFI	GGGAC	1 cut(s)	944
BsnI	GGCC	2 cut(s)	231, 360
Bsp1286I	GDGCHC	4 cut(s)	213, 251, 367, 436
Bsp143I	GATC	6 cut(s)	379, 409, 524, 607, 736, 819
BspACI	CCGC	1 cut(s)	106
BspANI	GGCC	2 cut(s)	231, 360
BspCNI	CTCAG	2 cut(s)	511, 939
BspLI	GGNNCC	4 cut(s)	69, 433, 609, 821
BspPI	GGATC	5 cut(s)	602, 615, 731, 814, 827
BspT107I	GGYRCC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	108
BsrI	ACTGG	3 cut(s)	161, 274, 982
BssMI	GATC	6 cut(s)	379, 409, 524, 607, 736, 819
Bst4CI	ACNGT	5 cut(s)	82, 154, 246, 346, 935
Bst6I	CTCTTC	4 cut(s)	111, 150, 774, 837
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	498, 926
BstF5I	GGATG	2 cut(s)	142, 172
BstH2I	RGCGCY	1 cut(s)	677
BstHHI	GCGC	2 cut(s)	404, 676
BstKTI	GATC	6 cut(s)	382, 412, 527, 610, 739, 822
BstMBI	GATC	6 cut(s)	379, 409, 524, 607, 736, 819
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 447
BstNSI	RCATGY	1 cut(s)	645
BstSLI	GKGCMC	1 cut(s)	436
BstX2I	RGATCY	3 cut(s)	409, 607, 819
BstYI	RGATCY	3 cut(s)	409, 607, 819
BsuRI	GGCC	2 cut(s)	231, 360
BtsCI	GGATG	2 cut(s)	142, 172
BtsIMutI	CAGTG	7 cut(s)	78, 168, 242, 606, 702, 732, 940
Cac8I	GCNNGC	1 cut(s)	229
CaiI	CAGNNNCTG	1 cut(s)	580
CfoI	GCGC	2 cut(s)	404, 676
Cfr13I	GGNCC	1 cut(s)	967
CseI	GACGC	1 cut(s)	517
Csp6I	GTAC	5 cut(s)	110, 140, 155, 539, 683
CviAII	CATG	6 cut(s)	62, 255, 451, 530, 642, 653
CviQI	GTAC	5 cut(s)	110, 140, 155, 539, 683
DdeI	CTNAG	2 cut(s)	498, 926
DpnI	GATC	6 cut(s)	381, 411, 526, 609, 738, 821
DpnII	GATC	6 cut(s)	379, 409, 524, 607, 736, 819
Eam1104I	CTCTTC	4 cut(s)	111, 150, 774, 837
EarI	CTCTTC	4 cut(s)	111, 150, 774, 837
Ecl136II	GAGCTC	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	967
Eco53kI	GAGCTC	1 cut(s)	365
Eco57I	CTGAAG	3 cut(s)	678, 755, 858
EcoICRI	GAGCTC	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	967
EcoRI	GAATTC	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	367
FaeI	CATG	6 cut(s)	65, 258, 454, 533, 645, 656
FaqI	GGGAC	1 cut(s)	944
FatI	CATG	6 cut(s)	61, 254, 450, 529, 641, 652
FauI	CCCGC	1 cut(s)	99
FblI	GTMKAC	1 cut(s)	660
FokI	GGATG	2 cut(s)	149, 179
FriOI	GRGCYC	1 cut(s)	367
FspBI	CTAG	2 cut(s)	522, 648
GlaI	GCGC	2 cut(s)	403, 675
GsaI	CCCAGC	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	677
HaeIII	GGCC	2 cut(s)	231, 360
HapII	CCGG	1 cut(s)	314
HgaI	GACGC	1 cut(s)	517
HhaI	GCGC	2 cut(s)	404, 676
Hin1II	CATG	6 cut(s)	65, 258, 454, 533, 645, 656
Hin6I	GCGC	2 cut(s)	402, 674
HinP1I	GCGC	2 cut(s)	402, 674
HindIII	AAGCTT	1 cut(s)	123
HinfI	GANTC	3 cut(s)	7, 51, 515
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	3 cut(s)	218, 821, 1010
Hpy166II	GTNNAC	3 cut(s)	353, 661, 716
Hpy188I	TCNGA	4 cut(s)	414, 627, 774, 941
Hpy188III	TCNNGA	7 cut(s)	278, 377, 500, 522, 667, 836, 1018
Hpy8I	GTNNAC	3 cut(s)	353, 661, 716
HpyAV	CCTTC	4 cut(s)	37, 85, 197, 664
HpyCH4III	ACNGT	5 cut(s)	82, 154, 246, 346, 935
HpyCH4V	TGCA	3 cut(s)	242, 464, 890
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 447
HpyF3I	CTNAG	2 cut(s)	498, 926
Hsp92II	CATG	6 cut(s)	65, 258, 454, 533, 645, 656
HspAI	GCGC	2 cut(s)	402, 674
Kzo9I	GATC	6 cut(s)	379, 409, 524, 607, 736, 819
LmnI	GCTCC	2 cut(s)	26, 316
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	2 cut(s)	522, 648
MaeIII	GTNAC	1 cut(s)	973
MalI	GATC	6 cut(s)	381, 411, 526, 609, 738, 821
MboI	GATC	6 cut(s)	379, 409, 524, 607, 736, 819
MboII	GAAGA	7 cut(s)	46, 128, 137, 614, 761, 824, 851
MfeI	CAATTG	3 cut(s)	30, 131, 614
MflI	RGATCY	3 cut(s)	409, 607, 819
MhlI	GDGCHC	4 cut(s)	213, 251, 367, 436
MmeI	TCCRAC	1 cut(s)	964
MseI	TTAA	5 cut(s)	188, 222, 390, 588, 845
MslI	CAYNNNNRTG	3 cut(s)	216, 552, 695
MspI	CCGG	1 cut(s)	314
MunI	CAATTG	3 cut(s)	30, 131, 614
MwoI	GCNNNNNNNGC	2 cut(s)	233, 447
NdeII	GATC	6 cut(s)	379, 409, 524, 607, 736, 819
NlaIII	CATG	6 cut(s)	65, 258, 454, 533, 645, 656
NlaIV	GGNNCC	4 cut(s)	69, 433, 609, 821
NmeAIII	GCCGAG	1 cut(s)	386
NspI	RCATGY	1 cut(s)	645
OliI	CACNNNNGTG	1 cut(s)	695
PciI	ACATGT	1 cut(s)	641
PfeI	GAWTC	3 cut(s)	7, 51, 515
PflFI	GACNNNGTC	1 cut(s)	935
PpuMI	RGGWCCY	1 cut(s)	967
PscI	ACATGT	1 cut(s)	641
PsiI	TTATAA	1 cut(s)	326
Psp124BI	GAGCTC	1 cut(s)	367
Psp5II	RGGWCCY	1 cut(s)	967
PspFI	CCCAGC	1 cut(s)	35
PspN4I	GGNNCC	4 cut(s)	69, 433, 609, 821
PspPI	GGNCC	1 cut(s)	967
PspPPI	RGGWCCY	1 cut(s)	967
PstNI	CAGNNNCTG	1 cut(s)	580
PsuI	RGATCY	3 cut(s)	409, 607, 819
PsyI	GACNNNGTC	1 cut(s)	935
RsaI	GTAC	5 cut(s)	111, 141, 156, 540, 684
RsaNI	GTAC	5 cut(s)	110, 140, 155, 539, 683
RseI	CAYNNNNRTG	3 cut(s)	216, 552, 695
SacI	GAGCTC	1 cut(s)	367
SaqAI	TTAA	5 cut(s)	188, 222, 390, 588, 845
Sau3AI	GATC	6 cut(s)	379, 409, 524, 607, 736, 819
Sau96I	GGNCC	1 cut(s)	967
SduI	GDGCHC	4 cut(s)	213, 251, 367, 436
SfaNI	GCATC	1 cut(s)	157
SinI	GGWCC	1 cut(s)	967
SmiMI	CAYNNNNRTG	3 cut(s)	216, 552, 695
SmlI	CTYRAG	1 cut(s)	741
SmoI	CTYRAG	1 cut(s)	741
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	2 cut(s)	522, 648
SstI	GAGCTC	1 cut(s)	367
TaaI	ACNGT	5 cut(s)	82, 154, 246, 346, 935
TfiI	GAWTC	3 cut(s)	7, 51, 515
Tru1I	TTAA	5 cut(s)	188, 222, 390, 588, 845
Tru9I	TTAA	5 cut(s)	188, 222, 390, 588, 845
TscAI	CASTG	7 cut(s)	85, 168, 249, 606, 702, 739, 940
TspDTI	ATGAA	3 cut(s)	111, 411, 650
TspRI	CASTG	7 cut(s)	85, 168, 249, 606, 702, 739, 940
Tth111I	GACNNNGTC	1 cut(s)	935
VpaK11BI	GGWCC	1 cut(s)	967
XapI	RAATTY	1 cut(s)	493
XbaI	TCTAGA	1 cut(s)	521
XceI	RCATGY	1 cut(s)	645
XmiI	GTMKAC	1 cut(s)	660
XspI	CTAG	2 cut(s)	522, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.