Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004132

Physical Location & Seq

Genomic Coordinates Forward (+)

44717103 .. 44721810

Gene Structure 4708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG313800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGCCACAAAATAGCAATACAAACCCAATCACCTCATATTCGGATTCAGATCCCAACACCAACCAACTCGCCATGGTTCAAGATGGCGACGCGTCTTCGCAAACTCCATACGAGGCGGCACTGGAGGCTCTCTCCTCCTTGATCACAAAACGCAGTCGCGCCGATAAGAGCAACAAAGGCGACCGCTTCGACCTCCTCTTTGACTATCTCAGAATTCTGGAATTAGAGGAGCCGATTGCGCAGATGAAGATCATTCATGTGGCTGGTACCAAAGGAAAGGGATCCACATGCACCTTCTCTGAATCAATACTACGTCATTGTGGCTTCCGCACTGGACTTTTCACTTCTCCTCATCTGATCGATGTTCGGGAAAGATTTCGGTTGGATGGAGTGGACATCAGTGAAGAGAAATTCTTGGAGTATTTCTGGTGGTCTTTTAATAGACTAAAGGAAAAAGCTAATGATGATATACCAATGCCTACCTACTTTCGCTTCCTTGCCTTACTTGCCTTCAAGATATTTGCAGGAGAGAAGGTAGATGTTGCTATTTTAGAGGTTGGGTTAGGCGGGAAGTTTGACGCAACAAATGTGGTTCAGGCACCCGTTGTTTGTGGCATATCATCCCTTGGATATGATCACATGGAGATTCTTGGATATACTCTGGGAGCAATTGCTGGGGAGAAGGCTGGAATCTTCAAGCATGGGGTTCCTGCCTTCACTGTGCCTCAACCTGATGAAGCAATGCGGGTACTTGAAGAGAAAGCTTCTCAATTGGATGTACCTCTTCAAACAGTACCACCAGTGGATGCTAATTTGCTGAATGGCTTAAAACTTGGCCTTGAAGGTGAGCACCAATATGTTAATGCTGGCCTTGCTGTTGCACTGTGCTCTGCATGGCTTCAAAGGACTGGTCATCTTGACATCACACACCCAGAAAATACTACCTCTCTGCCGGAGCAGTTTATAAAAGGACTAACGGCTACTGTCAGTTTACAAGGCCGAGCTCAAATTGTTCCAGATCACTATATTAACAATGAAAGCCCAGGAGACCCAGGAGATCTGACATTCTATTTAGATGGTGCCCATAGCCCCGAAAGCATGGAAATATGTGCAAGATGGTTTTCTCTTTCCACTAAAGAGAATTCTCACGAAAATACGCTGGATTCCTCTAGATCGCATGACTTCGTACAAAGGCATACTGATGTGGAAGCCAAGAAGAACTCACAGATACTGCTGTTTAATTGTATGTCAGTGAGGGATCCTCAATTGCTTCTTCCGAACCTGATGAAAACATGTGCTAGTCATGGTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004326 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009396 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010449 GO:0016049 GO:0016053 GO:0016874 GO:0016879 GO:0016881 GO:0018130 GO:0019438 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0035266 GO:0040007 GO:0042398 GO:0042558 GO:0042559 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0046900 GO:0046901 GO:0048364 GO:0048468 GO:0048469 GO:0048507 GO:0048532 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051186 GO:0051188 GO:0060560 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1904961 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko01523 map00790 map01100 map01523

Pfam Domains

Protein Families

Mur_ligase_M

Protein Analysis

437

Amino Acids

48.35

Weight (kDa)

5.23

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55630 AT3G55630 AT3G55630 AT3G55630 AT3G55630 AT3G55630 AT3G55630 AT5G05980 AT5G05980
fragaria_vesca	FvH4_7g23490 FvH4_7g23490 FvH4_7g23490 FvH4_7g23490 FvH4_7g23490 FvH4_7g23490 FvH4_7g23490 FvH4_7g23490
malus_domestica	MD01G1140600.v1.1 MD07G1204900.v1.1
prunus_persica	Prupe.2G241100_v2.0.a1 Prupe.2G241100_v2.0.a1
pyrus_communis	pycom01g16120 pycom07g19140
rosa_chinensis	RchiOBHm_Chr1g0368621
rosa_laevigata	RLG00000027200
rosa_multiflora	Rmu_sc0011394.1_g000002
rosa_roxburghii	Rroxscaffold_4G00288400
rosa_rugosa	Rorug01G0343200
rosa_samantha	Rh1AG350500 Rh1BG313800 Rh1CG328400 Rh1DG345200
rosa_wichuraiana	Rw0G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	965
Acc16I	TGCGCA	1 cut(s)	240
Acc65I	GGTACC	1 cut(s)	266
AccB1I	GGYRCC	3 cut(s)	266, 598, 1079
AccII	CGCG	2 cut(s)	92, 159
AciI	CCGC	5 cut(s)	116, 184, 328, 567, 745
AclWI	GGATC	5 cut(s)	44, 276, 289, 1253, 1266
AcsI	RAATTY	3 cut(s)	213, 410, 1141
AfaI	GTAC	5 cut(s)	268, 750, 780, 795, 1188
AflIII	ACRYGT	2 cut(s)	90, 1292
AgsI	TTSAA	7 cut(s)	80, 514, 697, 755, 788, 842, 902
AjnI	CCWGG	2 cut(s)	1042, 1051
AluBI	AGCT	3 cut(s)	458, 764, 1004
AluI	AGCT	3 cut(s)	458, 764, 1004
Alw21I	GWGCWC	3 cut(s)	852, 890, 1006
Alw26I	GTCTC	1 cut(s)	1041
AlwI	GGATC	5 cut(s)	44, 276, 289, 1253, 1266
AlwNI	CAGNNNCTG	1 cut(s)	1231
AoxI	GGCC	3 cut(s)	835, 868, 997
ApoI	RAATTY	3 cut(s)	213, 410, 1141
ArsI	GACNNNNNNTTYG	4 cut(s)	182, 214, 895, 927
Asp700I	GAANNNNTTC	1 cut(s)	375
Asp718I	GGTACC	1 cut(s)	266
AspLEI	GCGC	2 cut(s)	161, 241
AsuHPI	GGTGA	2 cut(s)	22, 857
BaeGI	GKGCMC	1 cut(s)	1084
BaeI	ACNNNNGTAYC	2 cut(s)	1220, 1253
BamHI	GGATCC	2 cut(s)	281, 1258
BanI	GGYRCC	3 cut(s)	266, 598, 1079
BanII	GRGCYC	1 cut(s)	1006
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	3 cut(s)	852, 890, 1006
BccI	CCATC	4 cut(s)	77, 380, 1070, 1110
BceAI	ACGGC	1 cut(s)	993
BciT130I	CCWGG	2 cut(s)	1044, 1053
BclI	TGATCA	2 cut(s)	141, 634
BcoDI	GTCTC	1 cut(s)	1041
BfaI	CTAG	2 cut(s)	1170, 1299
BglII	AGATCT	1 cut(s)	1057
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	1044, 1053
BmiI	GGNNCC	7 cut(s)	231, 268, 283, 600, 708, 1081, 1260
BmrFI	CCNGG	2 cut(s)	1044, 1053
BmsI	GCATC	1 cut(s)	796
BpiI	GAAGAC	1 cut(s)	87
BplI	GAGNNNNNCTC	4 cut(s)	116, 148, 1246, 1278
BpmI	CTGGAG	1 cut(s)	143
Bsa29I	ATCGAT	1 cut(s)	360
BsaBI	GATNNNNATC	2 cut(s)	48, 248
BsaI	GGTCTC	1 cut(s)	1041
BsaJI	CCNNGG	4 cut(s)	72, 625, 1042, 1051
BsaXI	ACNNNNNCTCC	2 cut(s)	519, 549
Bse1I	ACTGG	4 cut(s)	126, 337, 800, 913
Bse3DI	GCAATG	1 cut(s)	747
Bse8I	GATNNNNATC	2 cut(s)	48, 248
BseBI	CCWGG	2 cut(s)	1044, 1053
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	4 cut(s)	72, 625, 1042, 1051
BseGI	GGATG	4 cut(s)	391, 620, 781, 811
BseJI	GATNNNNATC	2 cut(s)	48, 248
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	1 cut(s)	223
BseNI	ACTGG	4 cut(s)	126, 337, 800, 913
BseRI	GAGGAG	4 cut(s)	124, 185, 242, 339
BseSI	GKGCMC	1 cut(s)	1084
BseYI	CCCAGC	1 cut(s)	674
Bsh1236I	CGCG	2 cut(s)	92, 159
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	3 cut(s)	837, 870, 999
BshNI	GGYRCC	3 cut(s)	266, 598, 1079
BshVI	ATCGAT	1 cut(s)	360
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	3 cut(s)	852, 890, 1006
BsiSI	CCGG	1 cut(s)	953
BsmAI	GTCTC	1 cut(s)	1041
BsnI	GGCC	3 cut(s)	837, 870, 999
Bso31I	GGTCTC	1 cut(s)	1041
Bsp1286I	GDGCHC	4 cut(s)	852, 890, 1006, 1084
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	5 cut(s)	116, 184, 328, 567, 745
BspANI	GGCC	3 cut(s)	837, 870, 999
BspCNI	CTCAG	1 cut(s)	222
BspDI	ATCGAT	1 cut(s)	360
BspFNI	CGCG	2 cut(s)	92, 159
BspLI	GGNNCC	7 cut(s)	231, 268, 283, 600, 708, 1081, 1260
BspPI	GGATC	5 cut(s)	44, 276, 289, 1253, 1266
BspT107I	GGYRCC	3 cut(s)	266, 598, 1079
BspTNI	GGTCTC	1 cut(s)	1041
BsrDI	GCAATG	1 cut(s)	747
BsrI	ACTGG	4 cut(s)	126, 337, 800, 913
BssECI	CCNNGG	4 cut(s)	72, 625, 1042, 1051
BssT1I	CCWWGG	2 cut(s)	72, 625
Bst2UI	CCWGG	2 cut(s)	1044, 1053
Bst4CI	ACNGT	4 cut(s)	721, 793, 885, 985
Bst6I	CTCTTC	3 cut(s)	399, 750, 789
BstC8I	GCNNGC	1 cut(s)	868
BstDEI	CTNAG	1 cut(s)	209
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	4 cut(s)	391, 620, 781, 811
BstFNI	CGCG	2 cut(s)	92, 159
BstHHI	GCGC	2 cut(s)	161, 241
BstMAI	GTCTC	1 cut(s)	1041
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 177, 238, 506, 872, 1095
BstNI	CCWGG	2 cut(s)	1044, 1053
BstNSI	RCATGY	2 cut(s)	291, 1296
BstSCI	CCNGG	2 cut(s)	1042, 1051
BstSLI	GKGCMC	1 cut(s)	1084
BstUI	CGCG	2 cut(s)	92, 159
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	4 cut(s)	49, 281, 1057, 1258
BstYI	RGATCY	4 cut(s)	49, 281, 1057, 1258
Bsu15I	ATCGAT	1 cut(s)	360
BsuRI	GGCC	3 cut(s)	837, 870, 999
BsuTUI	ATCGAT	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	4 cut(s)	391, 620, 781, 811
BtsIMutI	CAGTG	7 cut(s)	119, 330, 406, 717, 807, 881, 1257
Cac8I	GCNNGC	1 cut(s)	868
CaiI	CAGNNNCTG	1 cut(s)	1231
CfoI	GCGC	2 cut(s)	161, 241
ClaI	ATCGAT	1 cut(s)	360
CseI	GACGC	3 cut(s)	81, 98, 587
Csp6I	GTAC	5 cut(s)	267, 749, 779, 794, 1187
CspCI	CAANNNNNGTGG	2 cut(s)	570, 605
CviQI	GTAC	5 cut(s)	267, 749, 779, 794, 1187
DdeI	CTNAG	1 cut(s)	209
Eam1104I	CTCTTC	3 cut(s)	399, 750, 789
EarI	CTCTTC	3 cut(s)	399, 750, 789
Ecl136II	GAGCTC	1 cut(s)	1004
Eco130I	CCWWGG	2 cut(s)	72, 625
Eco24I	GRGCYC	1 cut(s)	1006
Eco31I	GGTCTC	1 cut(s)	1041
Eco53kI	GAGCTC	1 cut(s)	1004
EcoICRI	GAGCTC	1 cut(s)	1004
EcoRI	GAATTC	2 cut(s)	213, 1141
EcoRII	CCWGG	2 cut(s)	1042, 1051
EcoT14I	CCWWGG	2 cut(s)	72, 625
EcoT38I	GRGCYC	1 cut(s)	1006
ErhI	CCWWGG	2 cut(s)	72, 625
FauI	CCCGC	2 cut(s)	560, 738
FbaI	TGATCA	2 cut(s)	141, 634
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	4 cut(s)	398, 607, 788, 818
FriOI	GRGCYC	1 cut(s)	1006
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	2 cut(s)	1170, 1299
FspI	TGCGCA	1 cut(s)	240
GlaI	GCGC	2 cut(s)	160, 240
GluI	GCNGC	1 cut(s)	117
GsaI	CCCAGC	1 cut(s)	678
GsuI	CTGGAG	1 cut(s)	143
HaeIII	GGCC	3 cut(s)	837, 870, 999
HapII	CCGG	1 cut(s)	953
HgaI	GACGC	3 cut(s)	81, 98, 587
HhaI	GCGC	2 cut(s)	161, 241
Hin6I	GCGC	2 cut(s)	159, 239
HinP1I	GCGC	2 cut(s)	159, 239
HindIII	AAGCTT	1 cut(s)	762
HinfI	GANTC	5 cut(s)	44, 302, 646, 690, 1163
HpaII	CCGG	1 cut(s)	953
HphI	GGTGA	2 cut(s)	22, 857
Hpy166II	GTNNAC	2 cut(s)	394, 992
Hpy188I	TCNGA	7 cut(s)	43, 49, 212, 301, 357, 1062, 1278
Hpy188III	TCNNGA	8 cut(s)	80, 218, 368, 514, 917, 1016, 1148, 1170
Hpy8I	GTNNAC	2 cut(s)	394, 992
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	6 cut(s)	304, 520, 526, 676, 724, 836
HpyCH4III	ACNGT	4 cut(s)	721, 793, 885, 985
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	5 cut(s)	291, 524, 881, 893, 1112
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 177, 238, 506, 872, 1095
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	313
HspAI	GCGC	2 cut(s)	159, 239
KpnI	GGTACC	1 cut(s)	270
Ksp22I	TGATCA	2 cut(s)	141, 634
LmnI	GCTCC	3 cut(s)	229, 665, 955
LweI	GCATC	1 cut(s)	796
MaeI	CTAG	2 cut(s)	1170, 1299
MaeII	ACGT	1 cut(s)	313
MboII	GAAGA	8 cut(s)	87, 259, 416, 685, 767, 776, 1228, 1265
MfeI	CAATTG	3 cut(s)	669, 770, 1265
MflI	RGATCY	4 cut(s)	49, 281, 1057, 1258
MhlI	GDGCHC	4 cut(s)	852, 890, 1006, 1084
MluI	ACGCGT	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	363
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	5 cut(s)	438, 827, 861, 1029, 1239
MslI	CAYNNNNRTG	3 cut(s)	257, 855, 1200
MspI	CCGG	1 cut(s)	953
MspR9I	CCNGG	2 cut(s)	1044, 1053
MunI	CAATTG	3 cut(s)	669, 770, 1265
MvaI	CCWGG	2 cut(s)	1044, 1053
MvnI	CGCG	2 cut(s)	92, 159
MwoI	GCNNNNNNNGC	6 cut(s)	125, 177, 238, 506, 872, 1095
NcoI	CCATGG	1 cut(s)	72
NlaIV	GGNNCC	7 cut(s)	231, 268, 283, 600, 708, 1081, 1260
NmeAIII	GCCGAG	1 cut(s)	1025
NsbI	TGCGCA	1 cut(s)	240
NspI	RCATGY	2 cut(s)	291, 1296
PciI	ACATGT	1 cut(s)	1292
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	5 cut(s)	44, 302, 646, 690, 1163
PkrI	GCNGC	1 cut(s)	118
PscI	ACATGT	1 cut(s)	1292
PsiI	TTATAA	1 cut(s)	965
Psp124BI	GAGCTC	1 cut(s)	1006
Psp6I	CCWGG	2 cut(s)	1042, 1051
PspFI	CCCAGC	1 cut(s)	674
PspGI	CCWGG	2 cut(s)	1042, 1051
PspN4I	GGNNCC	7 cut(s)	231, 268, 283, 600, 708, 1081, 1260
PstNI	CAGNNNCTG	1 cut(s)	1231
PsuI	RGATCY	4 cut(s)	49, 281, 1057, 1258
RsaI	GTAC	5 cut(s)	268, 750, 780, 795, 1188
RsaNI	GTAC	5 cut(s)	267, 749, 779, 794, 1187
RseI	CAYNNNNRTG	3 cut(s)	257, 855, 1200
SacI	GAGCTC	1 cut(s)	1006
SaqAI	TTAA	5 cut(s)	438, 827, 861, 1029, 1239
SatI	GCNGC	1 cut(s)	117
ScrFI	CCNGG	2 cut(s)	1044, 1053
SduI	GDGCHC	4 cut(s)	852, 890, 1006, 1084
SfaNI	GCATC	1 cut(s)	796
SmiMI	CAYNNNNRTG	3 cut(s)	257, 855, 1200
SsiI	CCGC	5 cut(s)	116, 184, 328, 567, 745
SspMI	CTAG	2 cut(s)	1170, 1299
SstI	GAGCTC	1 cut(s)	1006
StyD4I	CCNGG	2 cut(s)	1042, 1051
StyI	CCWWGG	2 cut(s)	72, 625
TaaI	ACNGT	4 cut(s)	721, 793, 885, 985
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	2 cut(s)	189, 360
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	5 cut(s)	44, 302, 646, 690, 1163
Tru1I	TTAA	5 cut(s)	438, 827, 861, 1029, 1239
Tru9I	TTAA	5 cut(s)	438, 827, 861, 1029, 1239
TscAI	CASTG	7 cut(s)	126, 337, 406, 724, 807, 888, 1257
TspDTI	ATGAA	5 cut(s)	245, 260, 750, 1050, 1301
TspRI	CASTG	7 cut(s)	126, 337, 406, 724, 807, 888, 1257
XapI	RAATTY	3 cut(s)	213, 410, 1141
XbaI	TCTAGA	1 cut(s)	1169
XceI	RCATGY	2 cut(s)	291, 1296
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	2 cut(s)	1170, 1299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.