RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g24820 |
| malus_domestica | MD01G1156100.v1.1 MD07G1224800.v1.1 |
| prunus_persica | Prupe.2G253400_v2.0.a1 |
| pyrus_communis | pycom01g17300 |
| rosa_chinensis | RchiOBHm_Chr1g0370691 |
| rosa_laevigata | RLG00000027017 |
| rosa_multiflora | Rmu_sc0004550.1_g000011 |
| rosa_roxburghii | Rroxscaffold_4G00286300 |
| rosa_rugosa | Rorug01G0358500 |
| rosa_samantha | Rh1DG363200 |
| rosa_wichuraiana | Rw1G032400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 963 |
| AccII | CGCG | 1 cut(s) | 1951 |
| AciI | CCGC | 5 cut(s) | 206, 865, 1436, 1697, 1949 |
| AclI | AACGTT | 1 cut(s) | 1065 |
| AclWI | GGATC | 9 cut(s) | 164, 217, 268, 835, 890, 959, 1344, 1983, 1996 |
| AcoI | YGGCCR | 1 cut(s) | 916 |
| AcsI | RAATTY | 5 cut(s) | 752, 860, 934, 1365, 1876 |
| AcuI | CTGAAG | 2 cut(s) | 1809, 1952 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 150, 983, 984 |
| AflII | CTTAAG | 1 cut(s) | 398 |
| AgsI | TTSAA | 8 cut(s) | 182, 191, 333, 758, 1079, 1600, 1996, 2051 |
| Alw26I | GTCTC | 2 cut(s) | 1122, 1924 |
| AlwI | GGATC | 9 cut(s) | 164, 217, 268, 835, 890, 959, 1344, 1983, 1996 |
| AoxI | GGCC | 2 cut(s) | 202, 916 |
| ApoI | RAATTY | 5 cut(s) | 752, 860, 934, 1365, 1876 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 111, 186, 501 |
| AspLEI | GCGC | 2 cut(s) | 1390, 1566 |
| AspS9I | GGNCC | 1 cut(s) | 203 |
| AsuC2I | CCSGG | 1 cut(s) | 1693 |
| AsuHPI | GGTGA | 6 cut(s) | 226, 577, 1077, 1224, 1348, 1687 |
| AsuII | TTCGAA | 1 cut(s) | 256 |
| BaeGI | GKGCMC | 2 cut(s) | 373, 966 |
| BamHI | GGATCC | 1 cut(s) | 1988 |
| BanI | GGYRCC | 1 cut(s) | 963 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1945, 1977 |
| BbsI | GAAGAC | 1 cut(s) | 1086 |
| BbvCI | CCTCAGC | 1 cut(s) | 1311 |
| BceAI | ACGGC | 2 cut(s) | 1212, 1949 |
| BclI | TGATCA | 4 cut(s) | 147, 814, 1150, 1428 |
| BcnI | CCSGG | 1 cut(s) | 1693 |
| BcoDI | GTCTC | 2 cut(s) | 1122, 1924 |
| BfaI | CTAG | 6 cut(s) | 129, 350, 506, 638, 1220, 1569 |
| BfmI | CTRYAG | 1 cut(s) | 122 |
| BfoI | RGCGCY | 1 cut(s) | 1567 |
| BfrI | CTTAAG | 1 cut(s) | 398 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1580 |
| Bme1390I | CCNGG | 1 cut(s) | 1693 |
| BmgT120I | GGNCC | 1 cut(s) | 203 |
| BmiI | GGNNCC | 3 cut(s) | 965, 1701, 1990 |
| BmrFI | CCNGG | 1 cut(s) | 1693 |
| BmsI | GCATC | 5 cut(s) | 600, 920, 1171, 1618, 2005 |
| BpiI | GAAGAC | 1 cut(s) | 1086 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 83, 115, 230, 262 |
| BpmI | CTGGAG | 3 cut(s) | 1461, 1596, 1817 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1311 |
| Bpu14I | TTCGAA | 1 cut(s) | 256 |
| BpuEI | CTTGAG | 1 cut(s) | 1013 |
| BpuMI | CCSGG | 1 cut(s) | 1693 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1427 |
| BsaJI | CCNNGG | 5 cut(s) | 102, 609, 1485, 1692, 1755 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1908, 1938 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 150, 983, 984 |
| Bse1I | ACTGG | 2 cut(s) | 116, 1231 |
| Bse3DI | GCAATG | 2 cut(s) | 94, 1340 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1427 |
| BseDI | CCNNGG | 5 cut(s) | 102, 609, 1485, 1692, 1755 |
| BseGI | GGATG | 3 cut(s) | 911, 1633, 1732 |
| BseJI | GATNNNNATC | 1 cut(s) | 1427 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 150, 983, 984 |
| BseMI | GCAATG | 2 cut(s) | 94, 1340 |
| BseMII | CTCAG | 7 cut(s) | 380, 590, 1113, 1191, 1302, 1337, 2069 |
| BseNI | ACTGG | 2 cut(s) | 116, 1231 |
| BseRI | GAGGAG | 6 cut(s) | 12, 1070, 1126, 1814, 1929, 1934 |
| BseSI | GKGCMC | 2 cut(s) | 373, 966 |
| BseYI | CCCAGC | 2 cut(s) | 361, 764 |
| Bsh1236I | CGCG | 1 cut(s) | 1951 |
| BshFI | GGCC | 2 cut(s) | 204, 918 |
| BshNI | GGYRCC | 1 cut(s) | 963 |
| BsiSI | CCGG | 3 cut(s) | 915, 1580, 1692 |
| BslFI | GGGAC | 1 cut(s) | 836 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 150, 983, 984 |
| BsmAI | GTCTC | 2 cut(s) | 1122, 1924 |
| BsmBI | CGTCTC | 1 cut(s) | 1924 |
| BsmFI | GGGAC | 1 cut(s) | 836 |
| BsmI | GAATGC | 2 cut(s) | 1507, 1956 |
| BsnI | GGCC | 2 cut(s) | 204, 918 |
| Bsp119I | TTCGAA | 1 cut(s) | 256 |
| Bsp1286I | GDGCHC | 2 cut(s) | 373, 966 |
| Bsp19I | CCATGG | 2 cut(s) | 609, 1485 |
| BspACI | CCGC | 5 cut(s) | 206, 865, 1436, 1697, 1949 |
| BspANI | GGCC | 2 cut(s) | 204, 918 |
| BspCNI | CTCAG | 7 cut(s) | 381, 591, 1112, 1192, 1303, 1338, 2068 |
| BspFNI | CGCG | 1 cut(s) | 1951 |
| BspLI | GGNNCC | 3 cut(s) | 965, 1701, 1990 |
| BspMAI | CTGCAG | 1 cut(s) | 126 |
| BspPI | GGATC | 9 cut(s) | 164, 217, 268, 835, 890, 959, 1344, 1983, 1996 |
| BspQI | GCTCTTC | 3 cut(s) | 253, 492, 1805 |
| BspT104I | TTCGAA | 1 cut(s) | 256 |
| BspT107I | GGYRCC | 1 cut(s) | 963 |
| BspTI | CTTAAG | 1 cut(s) | 398 |
| BsrDI | GCAATG | 2 cut(s) | 94, 1340 |
| BsrI | ACTGG | 2 cut(s) | 116, 1231 |
| BssECI | CCNNGG | 5 cut(s) | 102, 609, 1485, 1692, 1755 |
| BssT1I | CCWWGG | 3 cut(s) | 609, 1485, 1755 |
| Bst4CI | ACNGT | 2 cut(s) | 527, 725 |
| Bst6I | CTCTTC | 7 cut(s) | 177, 253, 487, 492, 1805, 1893, 1971 |
| BstAFI | CTTAAG | 1 cut(s) | 398 |
| BstBI | TTCGAA | 1 cut(s) | 256 |
| BstC8I | GCNNGC | 8 cut(s) | 126, 206, 447, 660, 1143, 1251, 1738, 1767 |
| BstDSI | CCRYGG | 3 cut(s) | 102, 609, 1485 |
| BstEII | GGTNACC | 1 cut(s) | 1549 |
| BstF5I | GGATG | 3 cut(s) | 911, 1633, 1732 |
| BstFNI | CGCG | 1 cut(s) | 1951 |
| BstH2I | RGCGCY | 1 cut(s) | 1567 |
| BstHHI | GCGC | 2 cut(s) | 1390, 1566 |
| BstMAI | GTCTC | 2 cut(s) | 1122, 1924 |
| BstNSI | RCATGY | 2 cut(s) | 975, 1145 |
| BstPI | GGTNACC | 1 cut(s) | 1549 |
| BstSCI | CCNGG | 1 cut(s) | 1691 |
| BstSFI | CTRYAG | 1 cut(s) | 122 |
| BstSLI | GKGCMC | 2 cut(s) | 373, 966 |
| BstUI | CGCG | 1 cut(s) | 1951 |
| BstV2I | GAAGAC | 1 cut(s) | 1086 |
| BstX2I | RGATCY | 3 cut(s) | 895, 1349, 1988 |
| BstYI | RGATCY | 3 cut(s) | 895, 1349, 1988 |
| BsuRI | GGCC | 2 cut(s) | 204, 918 |
| BtgI | CCRYGG | 3 cut(s) | 102, 609, 1485 |
| BtsCI | GGATG | 3 cut(s) | 911, 1633, 1732 |
| BtsI | GCAGTG | 2 cut(s) | 1383, 2018 |
| BtsIMutI | CAGTG | 3 cut(s) | 532, 1383, 2018 |
| Cac8I | GCNNGC | 8 cut(s) | 126, 206, 447, 660, 1143, 1251, 1738, 1767 |
| CfoI | GCGC | 2 cut(s) | 1390, 1566 |
| Cfr13I | GGNCC | 1 cut(s) | 203 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 438, 473 |
| CviAII | CATG | 7 cut(s) | 145, 610, 972, 1003, 1142, 1432, 1486 |
| DraI | TTTAAA | 1 cut(s) | 633 |
| EaeI | YGGCCR | 1 cut(s) | 916 |
| Eam1104I | CTCTTC | 7 cut(s) | 177, 253, 487, 492, 1805, 1893, 1971 |
| EarI | CTCTTC | 7 cut(s) | 177, 253, 487, 492, 1805, 1893, 1971 |
| Eco130I | CCWWGG | 3 cut(s) | 609, 1485, 1755 |
| Eco32I | GATATC | 2 cut(s) | 415, 1240 |
| Eco57I | CTGAAG | 2 cut(s) | 1809, 1952 |
| Eco91I | GGTNACC | 1 cut(s) | 1549 |
| EcoO65I | GGTNACC | 1 cut(s) | 1549 |
| EcoRI | GAATTC | 3 cut(s) | 860, 1365, 1876 |
| EcoRV | GATATC | 2 cut(s) | 415, 1240 |
| EcoT14I | CCWWGG | 3 cut(s) | 609, 1485, 1755 |
| ErhI | CCWWGG | 3 cut(s) | 609, 1485, 1755 |
| Esp3I | CGTCTC | 1 cut(s) | 1924 |
| FaeI | CATG | 7 cut(s) | 148, 613, 975, 1006, 1145, 1435, 1489 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 567, 599 |
| FaqI | GGGAC | 1 cut(s) | 836 |
| FatI | CATG | 7 cut(s) | 144, 609, 971, 1002, 1141, 1431, 1485 |
| FauI | CCCGC | 2 cut(s) | 213, 1956 |
| FauNDI | CATATG | 2 cut(s) | 83, 1258 |
| FbaI | TGATCA | 4 cut(s) | 147, 814, 1150, 1428 |
| FokI | GGATG | 3 cut(s) | 898, 1640, 1739 |
| FspBI | CTAG | 6 cut(s) | 129, 350, 506, 638, 1220, 1569 |
| GlaI | GCGC | 2 cut(s) | 1389, 1565 |
| GsaI | CCCAGC | 2 cut(s) | 365, 768 |
| GsuI | CTGGAG | 3 cut(s) | 1461, 1596, 1817 |
| HaeII | RGCGCY | 1 cut(s) | 1567 |
| HaeIII | GGCC | 2 cut(s) | 204, 918 |
| HapII | CCGG | 3 cut(s) | 915, 1580, 1692 |
| HhaI | GCGC | 2 cut(s) | 1390, 1566 |
| Hin1II | CATG | 7 cut(s) | 148, 613, 975, 1006, 1145, 1435, 1489 |
| Hin6I | GCGC | 2 cut(s) | 1388, 1564 |
| HinP1I | GCGC | 2 cut(s) | 1388, 1564 |
| HindIII | AAGCTT | 2 cut(s) | 110, 161 |
| HinfI | GANTC | 8 cut(s) | 76, 187, 194, 253, 1033, 1423, 1472, 2059 |
| HpaII | CCGG | 3 cut(s) | 915, 1580, 1692 |
| HphI | GGTGA | 6 cut(s) | 226, 577, 1077, 1224, 1348, 1687 |
| Hpy166II | GTNNAC | 2 cut(s) | 674, 1660 |
| Hpy188III | TCNNGA | 4 cut(s) | 151, 191, 1030, 1370 |
| Hpy8I | GTNNAC | 2 cut(s) | 674, 1660 |
| HpyAV | CCTTC | 7 cut(s) | 349, 360, 1293, 1598, 1784, 1864, 1971 |
| HpyCH4III | ACNGT | 2 cut(s) | 527, 725 |
| HpyCH4IV | ACGT | 1 cut(s) | 1065 |
| HpySE526I | ACGT | 1 cut(s) | 1065 |
| Hsp92II | CATG | 7 cut(s) | 148, 613, 975, 1006, 1145, 1435, 1489 |
| HspAI | GCGC | 2 cut(s) | 1388, 1564 |
| Ksp22I | TGATCA | 4 cut(s) | 147, 814, 1150, 1428 |
| LguI | GCTCTTC | 3 cut(s) | 253, 492, 1805 |
| LmnI | GCTCC | 5 cut(s) | 104, 358, 1113, 1319, 1442 |
| LweI | GCATC | 5 cut(s) | 600, 920, 1171, 1618, 2005 |
| MaeI | CTAG | 6 cut(s) | 129, 350, 506, 638, 1220, 1569 |
| MaeII | ACGT | 1 cut(s) | 1065 |
| MaeIII | GTNAC | 5 cut(s) | 63, 403, 1336, 1381, 1549 |
| MfeI | CAATTG | 1 cut(s) | 1446 |
| MflI | RGATCY | 3 cut(s) | 895, 1349, 1988 |
| MhlI | GDGCHC | 2 cut(s) | 373, 966 |
| MlyI | GAGTC | 1 cut(s) | 1042 |
| MroXI | GAANNNNTTC | 3 cut(s) | 111, 186, 501 |
| MseI | TTAA | 8 cut(s) | 399, 477, 632, 779, 1188, 1647, 1847, 1940 |
| MslI | CAYNNNNRTG | 1 cut(s) | 924 |
| MspA1I | CMGCKG | 2 cut(s) | 867, 1616 |
| MspCI | CTTAAG | 1 cut(s) | 398 |
| MspI | CCGG | 3 cut(s) | 915, 1580, 1692 |
| MspR9I | CCNGG | 1 cut(s) | 1693 |
| MunI | CAATTG | 1 cut(s) | 1446 |
| Mva1269I | GAATGC | 2 cut(s) | 1507, 1956 |
| MvnI | CGCG | 1 cut(s) | 1951 |
| NciI | CCSGG | 1 cut(s) | 1693 |
| NcoI | CCATGG | 2 cut(s) | 609, 1485 |
| NdeI | CATATG | 2 cut(s) | 83, 1258 |
| NlaIII | CATG | 7 cut(s) | 148, 613, 975, 1006, 1145, 1435, 1489 |
| NlaIV | GGNNCC | 3 cut(s) | 965, 1701, 1990 |
| NmuCI | GTSAC | 2 cut(s) | 1336, 1381 |
| NspI | RCATGY | 2 cut(s) | 975, 1145 |
| NspV | TTCGAA | 1 cut(s) | 256 |
| PaeI | GCATGC | 1 cut(s) | 1145 |
| PciSI | GCTCTTC | 3 cut(s) | 253, 492, 1805 |
| PctI | GAATGC | 2 cut(s) | 1507, 1956 |
| PdmI | GAANNNNTTC | 3 cut(s) | 111, 186, 501 |
| PfeI | GAWTC | 7 cut(s) | 76, 187, 194, 253, 1423, 1472, 2059 |
| PleI | GAGTC | 1 cut(s) | 1041 |
| PpsI | GAGTC | 1 cut(s) | 1041 |
| Psp1406I | AACGTT | 1 cut(s) | 1065 |
| PspEI | GGTNACC | 1 cut(s) | 1549 |
| PspFI | CCCAGC | 2 cut(s) | 361, 764 |
| PspN4I | GGNNCC | 3 cut(s) | 965, 1701, 1990 |
| PspPI | GGNCC | 1 cut(s) | 203 |
| PstI | CTGCAG | 1 cut(s) | 126 |
| PsuI | RGATCY | 3 cut(s) | 895, 1349, 1988 |
| PvuII | CAGCTG | 1 cut(s) | 1616 |
| RseI | CAYNNNNRTG | 1 cut(s) | 924 |
| SapI | GCTCTTC | 3 cut(s) | 253, 492, 1805 |
| SaqAI | TTAA | 8 cut(s) | 399, 477, 632, 779, 1188, 1647, 1847, 1940 |
| Sau96I | GGNCC | 1 cut(s) | 203 |
| SchI | GAGTC | 1 cut(s) | 1042 |
| ScrFI | CCNGG | 1 cut(s) | 1693 |
| SduI | GDGCHC | 2 cut(s) | 373, 966 |
| SfaNI | GCATC | 5 cut(s) | 600, 920, 1171, 1618, 2005 |
| SfcI | CTRYAG | 1 cut(s) | 122 |
| SfuI | TTCGAA | 1 cut(s) | 256 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 924 |
| SmlI | CTYRAG | 2 cut(s) | 398, 1028 |
| SmoI | CTYRAG | 2 cut(s) | 398, 1028 |
| SphI | GCATGC | 1 cut(s) | 1145 |
| SsiI | CCGC | 5 cut(s) | 206, 865, 1436, 1697, 1949 |
| SspMI | CTAG | 6 cut(s) | 129, 350, 506, 638, 1220, 1569 |
| StyD4I | CCNGG | 1 cut(s) | 1691 |
| StyI | CCWWGG | 3 cut(s) | 609, 1485, 1755 |
| TaaI | ACNGT | 2 cut(s) | 527, 725 |
| TaiI | ACGT | 1 cut(s) | 1068 |
| TaqI | TCGA | 5 cut(s) | 221, 256, 938, 1880, 2002 |
| TaqII | GACCGA | 1 cut(s) | 584 |
| TauI | GCSGC | 1 cut(s) | 1439 |
| TfiI | GAWTC | 7 cut(s) | 76, 187, 194, 253, 1423, 1472, 2059 |
| Tru1I | TTAA | 8 cut(s) | 399, 477, 632, 779, 1188, 1647, 1847, 1940 |
| Tru9I | TTAA | 8 cut(s) | 399, 477, 632, 779, 1188, 1647, 1847, 1940 |
| TscAI | CASTG | 3 cut(s) | 532, 1390, 2025 |
| TseFI | GTSAC | 2 cut(s) | 1336, 1381 |
| Tsp45I | GTSAC | 2 cut(s) | 1336, 1381 |
| TspDTI | ATGAA | 7 cut(s) | 544, 708, 813, 867, 905, 1764, 1958 |
| TspGWI | ACGGA | 2 cut(s) | 119, 238 |
| TspRI | CASTG | 3 cut(s) | 532, 1390, 2025 |
| Vha464I | CTTAAG | 1 cut(s) | 398 |
| XapI | RAATTY | 5 cut(s) | 752, 860, 934, 1365, 1876 |
| XceI | RCATGY | 2 cut(s) | 975, 1145 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1285, 1582 |
| XmnI | GAANNNNTTC | 3 cut(s) | 111, 186, 501 |
| XspI | CTAG | 6 cut(s) | 129, 350, 506, 638, 1220, 1569 |