Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0017717

Physical Location & Seq

Genomic Coordinates Forward (+)

58982630 .. 58984699

Gene Structure 2070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG363200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGATGTGGCTCTAATTCCTCCAATGTTGGTTTCTTCAGGCTTTTTGCCTACTGGGTCATTCTTAGAGTCATTGATTCACATATGCAATGACATTTGCTCCATGGAAAAGCTTCCTTTTCTTCAGGTCAGGAACATCTCCACCATGATAAGGAGGATTAAGCTTCTTTCTTCTTTGTTCGAAGAGATTCAAGAAACTAACGGCCCTCTCCCTCCATCTTCAATCCTGTGCCTCACCGAGCTCTTCTCCGTGATTCGAAGAATCAAGTTTTTGATTCAAGAGTGTAAGGACTGCAGCTTTTTGTGGGAACTTATGCAGATGGAGCTGGTTTCAAATCAGTTCTACGTGTTGGTCAAGGAGTTAGGGAGAGCACTTGATATTTTGCCTGTGAGTTTGCTCAATATTACGGCAGATATTAGAGAGCAGATTGAGCTTCTTCACCGGCAAGCGAAAAAGGCAGAGTTGTTTATTGACCTTAAAGAGGTGAAGAGAAGAGAAGAGCTTTTGGTATTGATGGGGAGCAACAATGAGAGGAACAAGAAGAACAAAGGGTTTGTAGACTTGGGCAAGGTGAAGGATATCTTGAGCAGCATTGGTTTGAGAAGCTCAATGGATTACGAGGAAGAGATTTCAAAGCTAGAGGCAGAAGCTCAAAAGCAAGCAGGGAGTGGCGGACTCATTGTGGAAAATGCTGTCACCGCGCTACTCAACCTTTCCATCTTCAACAACAACAAAATTTTGATAATGGCTGCAGGAGCAATTGATTACATAATCGATGTGTTGGAATCAGGGAACACAATGGAAGCAAGAGAGAATGCAGCAGCAGCAATTTTCAGCTTGTCCATTATTGATGACTGCAAGGTGACAATTGGAAAAAGACCAAGAGCCATTCCGGCATTGGTGGGGCTTTTGAAAGAAGGAACTCCTGCTGGTAAAAAGGACGCAGCCATTGCTCTCTTCAACCTTGCAGTCTACAATGCTAACAAGGTCAGTCTGGTGGTTGCTGGGGCGGTTCCCCTGCTCATTGATCTGTTGATGGATGACAAGGCGGGGATAACAGATGATGCCTTGGCAGTTCTTGCTCAACTTTTGGGATGCTCTGAAGGGTTGGAGGAGATTGGGAAGAGTAGGGTTCTAGTGCCAATTCTCATTGATCTTCTGAGATTTGGTTCTCCAAAAGGGAAGGAGAATTCAATAACTCTTCTGTTGGGGTTGTGCAAAGATGGAGGAGAGGAGGTTGCAAGACGACTATTGATGAACCCGCGGAGTATCCCTTCTCTTCAAAGCTTGGCTGCTGATGGATCCTTGAAAGCTCGAAGAAAAGCCGATGCACTGCTTAGATTACTGAACAGACGCTGCTTTCAATCTCAGAATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009610 GO:0009617 GO:0009620 GO:0009877 GO:0009987 GO:0010033 GO:0010941 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0036377 GO:0042221 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

459

Amino Acids

50.41

Weight (kDa)

6.32

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCAfunc	PF19584	43 - 152	6.5e-07	MCAfunc domain
PUB10_N	PF25368	46 - 153	1.3e-14	PUB10-like, N-terminal domain
ARM_PUB	PF25598	178 - 453	4.2e-19	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	233 - 435	5.9e-07	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017717)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g24820
malus_domestica	MD01G1156100.v1.1 MD07G1224800.v1.1
prunus_persica	Prupe.2G253400_v2.0.a1
pyrus_communis	pycom01g17300
rosa_chinensis	RchiOBHm_Chr1g0370691
rosa_laevigata	RLG00000027017
rosa_multiflora	Rmu_sc0004550.1_g000011
rosa_roxburghii	Rroxscaffold_4G00286300
rosa_rugosa	Rorug01G0358500
rosa_samantha	Rh1DG363200
rosa_wichuraiana	Rw1G032400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	558, 972
AccII	CGCG	2 cut(s)	701, 1264
AciI	CCGC	6 cut(s)	672, 699, 1010, 1049, 1262, 1264
AclWI	GGATC	2 cut(s)	1296, 1309
AcsI	RAATTY	2 cut(s)	735, 1189
AcuI	CTGAAG	3 cut(s)	21, 107, 1122
AfiI	CCNNNNNNNGG	2 cut(s)	150, 481
AflIII	ACRYGT	1 cut(s)	345
AjuI	GAANNNNNNNTTGG	2 cut(s)	16, 48
Alw21I	GWGCWC	2 cut(s)	243, 373
AlwI	GGATC	2 cut(s)	1296, 1309
AlwNI	CAGNNNCTG	1 cut(s)	1356
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	9 cut(s)	294, 588, 749, 818, 821, 824, 944, 1292, 1356
ApoI	RAATTY	2 cut(s)	735, 1189
Asp700I	GAANNNNTTC	2 cut(s)	111, 186
AspLEI	GCGC	1 cut(s)	703
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	6 cut(s)	226, 431, 496, 583, 688, 874
AsuII	TTCGAA	2 cut(s)	180, 256
BamHI	GGATCC	1 cut(s)	1301
BanII	GRGCYC	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	243, 373
BbvI	GCAGC	9 cut(s)	306, 600, 736, 830, 833, 836, 956, 1279, 1343
BccI	CCATC	7 cut(s)	223, 313, 508, 725, 1030, 1217, 1292
BceAI	ACGGC	2 cut(s)	217, 423
BciVI	GTATCC	1 cut(s)	1280
BfaI	CTAG	2 cut(s)	638, 1136
BfmI	CTRYAG	2 cut(s)	292, 750
BfuI	GTATCC	1 cut(s)	1280
BglI	GCCNNNNNGGC	1 cut(s)	893
BisI	GCNGC	9 cut(s)	295, 589, 750, 819, 822, 825, 945, 1293, 1357
BlsI	GCNGC	9 cut(s)	296, 590, 751, 820, 823, 826, 946, 1294, 1358
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	2 cut(s)	1014, 1303
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	3 cut(s)	1054, 1085, 1318
BmuI	ACTGGG	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
Bpu14I	TTCGAA	2 cut(s)	180, 256
BpuEI	CTTGAG	1 cut(s)	604
Bsa29I	ATCGAT	1 cut(s)	774
BsaAI	YACGTR	1 cut(s)	346
BsaJI	CCNNGG	3 cut(s)	102, 1068, 1262
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 1221, 1251
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 481
Bse118I	RCCGGY	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	58
Bse3DI	GCAATG	2 cut(s)	94, 948
BseCI	ATCGAT	1 cut(s)	774
BseDI	CCNNGG	3 cut(s)	102, 1068, 1262
BseGI	GGATG	3 cut(s)	10, 1045, 1100
BseLI	CCNNNNNNNGG	2 cut(s)	150, 481
BseMI	GCAATG	2 cut(s)	94, 948
BseMII	CTCAG	1 cut(s)	1151
BseNI	ACTGG	1 cut(s)	58
BseRI	GAGGAG	3 cut(s)	1127, 1242, 1247
BseXI	GCAGC	9 cut(s)	306, 600, 736, 830, 833, 836, 956, 1279, 1343
BseYI	CCCAGC	1 cut(s)	1004
Bsh1236I	CGCG	2 cut(s)	701, 1264
BshFI	GGCC	1 cut(s)	204
BshVI	ATCGAT	1 cut(s)	774
BsiHKAI	GWGCWC	2 cut(s)	243, 373
BsiSI	CCGG	2 cut(s)	442, 893
BslI	CCNNNNNNNGG	2 cut(s)	150, 481
BsmI	GAATGC	1 cut(s)	820
BsnI	GGCC	1 cut(s)	204
Bsp119I	TTCGAA	2 cut(s)	180, 256
Bsp1286I	GDGCHC	2 cut(s)	243, 373
Bsp143I	GATC	3 cut(s)	1027, 1153, 1301
Bsp19I	CCATGG	1 cut(s)	102
BspACI	CCGC	6 cut(s)	672, 699, 1010, 1049, 1262, 1264
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	1 cut(s)	1152
BspDI	ATCGAT	1 cut(s)	774
BspFNI	CGCG	2 cut(s)	701, 1264
BspLI	GGNNCC	2 cut(s)	1014, 1303
BspMAI	CTGCAG	2 cut(s)	296, 754
BspPI	GGATC	2 cut(s)	1296, 1309
BspQI	GCTCTTC	2 cut(s)	248, 492
BspT104I	TTCGAA	2 cut(s)	180, 256
BsrDI	GCAATG	2 cut(s)	94, 948
BsrFI	RCCGGY	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	58
BssAI	RCCGGY	1 cut(s)	441
BssECI	CCNNGG	3 cut(s)	102, 1068, 1262
BssMI	GATC	3 cut(s)	1027, 1153, 1301
BssT1I	CCWWGG	2 cut(s)	102, 1068
BstAPI	GCANNNNNTGC	2 cut(s)	950, 1079
BstBAI	YACGTR	1 cut(s)	346
BstBI	TTCGAA	2 cut(s)	180, 256
BstC8I	GCNNGC	2 cut(s)	447, 660
BstDEI	CTNAG	4 cut(s)	64, 1160, 1337, 1368
BstDSI	CCRYGG	2 cut(s)	102, 1262
BstENI	CCTNNNNNAGG	1 cut(s)	479
BstF5I	GGATG	3 cut(s)	10, 1045, 1100
BstFNI	CGCG	2 cut(s)	701, 1264
BstHHI	GCGC	1 cut(s)	703
BstKTI	GATC	3 cut(s)	1030, 1156, 1304
BstMBI	GATC	3 cut(s)	1027, 1153, 1301
BstMWI	GCNNNNNNNGC	9 cut(s)	322, 430, 455, 698, 755, 824, 893, 950, 1079
BstSFI	CTRYAG	2 cut(s)	292, 750
BstUI	CGCG	2 cut(s)	701, 1264
BstV1I	GCAGC	9 cut(s)	306, 600, 736, 830, 833, 836, 956, 1279, 1343
BstX2I	RGATCY	1 cut(s)	1301
BstYI	RGATCY	1 cut(s)	1301
Bsu15I	ATCGAT	1 cut(s)	774
BsuI	GTATCC	1 cut(s)	1280
BsuRI	GGCC	1 cut(s)	204
BsuTUI	ATCGAT	1 cut(s)	774
BtgI	CCRYGG	2 cut(s)	102, 1262
BtsCI	GGATG	3 cut(s)	10, 1045, 1100
BtsI	GCAGTG	1 cut(s)	1331
BtsIMutI	CAGTG	1 cut(s)	1331
Cac8I	GCNNGC	2 cut(s)	447, 660
CaiI	CAGNNNCTG	1 cut(s)	1356
CfoI	GCGC	1 cut(s)	703
Cfr10I	RCCGGY	1 cut(s)	441
Cfr13I	GGNCC	1 cut(s)	203
Cfr42I	CCGCGG	1 cut(s)	1265
ClaI	ATCGAT	1 cut(s)	774
CseI	GACGC	2 cut(s)	950, 1362
CviAII	CATG	2 cut(s)	103, 145
DdeI	CTNAG	4 cut(s)	64, 1160, 1337, 1368
DpnI	GATC	3 cut(s)	1029, 1155, 1303
DpnII	GATC	3 cut(s)	1027, 1153, 1301
EciI	GGCGGA	1 cut(s)	687
Ecl136II	GAGCTC	1 cut(s)	241
Eco130I	CCWWGG	2 cut(s)	102, 1068
Eco24I	GRGCYC	1 cut(s)	243
Eco32I	GATATC	1 cut(s)	580
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	3 cut(s)	21, 107, 1122
EcoICRI	GAGCTC	1 cut(s)	241
EcoNI	CCTNNNNNAGG	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	1189
EcoRV	GATATC	1 cut(s)	580
EcoT14I	CCWWGG	2 cut(s)	102, 1068
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	2 cut(s)	102, 1068
FaeI	CATG	2 cut(s)	106, 148
FaiI	YATR	6 cut(s)	83, 85, 104, 146, 314, 770
FalI	AAGNNNNNCTT	2 cut(s)	566, 598
FatI	CATG	2 cut(s)	102, 144
FauI	CCCGC	2 cut(s)	1042, 1269
FauNDI	CATATG	1 cut(s)	83
FblI	GTMKAC	2 cut(s)	558, 972
Fnu4HI	GCNGC	9 cut(s)	295, 589, 750, 819, 822, 825, 945, 1293, 1357
FokI	GGATG	3 cut(s)	17, 1052, 1107
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	9 cut(s)	295, 589, 750, 819, 822, 825, 945, 1293, 1357
FspBI	CTAG	2 cut(s)	638, 1136
GlaI	GCGC	1 cut(s)	702
GluI	GCNGC	9 cut(s)	295, 589, 750, 819, 822, 825, 945, 1293, 1357
GsaI	CCCAGC	1 cut(s)	1008
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	2 cut(s)	442, 893
HgaI	GACGC	2 cut(s)	950, 1362
HhaI	GCGC	1 cut(s)	703
Hin1II	CATG	2 cut(s)	106, 148
Hin6I	GCGC	1 cut(s)	701
HinP1I	GCGC	1 cut(s)	701
HindIII	AAGCTT	3 cut(s)	110, 161, 1285
HinfI	GANTC	9 cut(s)	68, 76, 187, 253, 261, 274, 675, 785, 1372
HpaII	CCGG	2 cut(s)	442, 893
HphI	GGTGA	6 cut(s)	226, 431, 496, 583, 688, 874
Hpy166II	GTNNAC	2 cut(s)	559, 973
Hpy188I	TCNGA	3 cut(s)	1102, 1161, 1371
Hpy188III	TCNNGA	4 cut(s)	130, 191, 278, 583
Hpy8I	GTNNAC	2 cut(s)	559, 973
HpyAV	CCTTC	5 cut(s)	568, 911, 1097, 1177, 1284
HpyCH4IV	ACGT	1 cut(s)	345
HpyF10VI	GCNNNNNNNGC	9 cut(s)	322, 430, 455, 698, 755, 824, 893, 950, 1079
HpyF3I	CTNAG	4 cut(s)	64, 1160, 1337, 1368
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	106, 148
HspAI	GCGC	1 cut(s)	701
KspI	CCGCGG	1 cut(s)	1265
Kzo9I	GATC	3 cut(s)	1027, 1153, 1301
LguI	GCTCTTC	2 cut(s)	248, 492
LmnI	GCTCC	4 cut(s)	104, 322, 519, 755
Lsp1109I	GCAGC	9 cut(s)	306, 600, 736, 830, 833, 836, 956, 1279, 1343
LweI	GCATC	3 cut(s)	1054, 1085, 1318
MaeI	CTAG	2 cut(s)	638, 1136
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	2 cut(s)	694, 862
MalI	GATC	3 cut(s)	1029, 1155, 1303
MboI	GATC	3 cut(s)	1027, 1153, 1301
MfeI	CAATTG	2 cut(s)	759, 867
MflI	RGATCY	1 cut(s)	1301
MhlI	GDGCHC	2 cut(s)	243, 373
MluCI	AATT	7 cut(s)	15, 735, 759, 828, 867, 1143, 1189
MlyI	GAGTC	2 cut(s)	77, 669
MmeI	TCCRAC	2 cut(s)	762, 1089
MroXI	GAANNNNTTC	2 cut(s)	111, 186
MseI	TTAA	2 cut(s)	159, 477
MspA1I	CMGCKG	1 cut(s)	1264
MspI	CCGG	2 cut(s)	442, 893
MunI	CAATTG	2 cut(s)	759, 867
Mva1269I	GAATGC	1 cut(s)	820
MvnI	CGCG	2 cut(s)	701, 1264
MwoI	GCNNNNNNNGC	9 cut(s)	322, 430, 455, 698, 755, 824, 893, 950, 1079
NcoI	CCATGG	1 cut(s)	102
NdeI	CATATG	1 cut(s)	83
NdeII	GATC	3 cut(s)	1027, 1153, 1301
NlaIII	CATG	2 cut(s)	106, 148
NlaIV	GGNNCC	2 cut(s)	1014, 1303
NmuCI	GTSAC	2 cut(s)	694, 862
NspV	TTCGAA	2 cut(s)	180, 256
PciSI	GCTCTTC	2 cut(s)	248, 492
PctI	GAATGC	1 cut(s)	820
PdmI	GAANNNNTTC	2 cut(s)	111, 186
PfeI	GAWTC	7 cut(s)	76, 187, 253, 261, 274, 785, 1372
PkrI	GCNGC	9 cut(s)	296, 590, 751, 820, 823, 826, 946, 1294, 1358
PleI	GAGTC	2 cut(s)	76, 669
PpsI	GAGTC	2 cut(s)	76, 669
Ppu21I	YACGTR	1 cut(s)	346
Psp124BI	GAGCTC	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	1004
PspN4I	GGNNCC	2 cut(s)	1014, 1303
PspPI	GGNCC	1 cut(s)	203
PstI	CTGCAG	2 cut(s)	296, 754
PstNI	CAGNNNCTG	1 cut(s)	1356
PsuI	RGATCY	1 cut(s)	1301
SacI	GAGCTC	1 cut(s)	243
SacII	CCGCGG	1 cut(s)	1265
SapI	GCTCTTC	2 cut(s)	248, 492
SaqAI	TTAA	2 cut(s)	159, 477
SatI	GCNGC	9 cut(s)	295, 589, 750, 819, 822, 825, 945, 1293, 1357
Sau3AI	GATC	3 cut(s)	1027, 1153, 1301
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	2 cut(s)	77, 669
SduI	GDGCHC	2 cut(s)	243, 373
SfaNI	GCATC	3 cut(s)	1054, 1085, 1318
SfcI	CTRYAG	2 cut(s)	292, 750
Sfr303I	CCGCGG	1 cut(s)	1265
SfuI	TTCGAA	2 cut(s)	180, 256
SgrBI	CCGCGG	1 cut(s)	1265
SmlI	CTYRAG	1 cut(s)	583
SmoI	CTYRAG	1 cut(s)	583
Sse9I	AATT	7 cut(s)	15, 735, 759, 828, 867, 1143, 1189
SsiI	CCGC	6 cut(s)	672, 699, 1010, 1049, 1262, 1264
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	2 cut(s)	638, 1136
SstI	GAGCTC	1 cut(s)	243
StyI	CCWWGG	2 cut(s)	102, 1068
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	4 cut(s)	180, 256, 774, 1315
TasI	AATT	7 cut(s)	15, 735, 759, 828, 867, 1143, 1189
TfiI	GAWTC	7 cut(s)	76, 187, 253, 261, 274, 785, 1372
Tru1I	TTAA	2 cut(s)	159, 477
Tru9I	TTAA	2 cut(s)	159, 477
TscAI	CASTG	1 cut(s)	1338
TseFI	GTSAC	2 cut(s)	694, 862
TseI	GCWGC	9 cut(s)	294, 588, 749, 818, 821, 824, 944, 1292, 1356
Tsp45I	GTSAC	2 cut(s)	694, 862
TspDTI	ATGAA	1 cut(s)	1271
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	1 cut(s)	1338
XagI	CCTNNNNNAGG	1 cut(s)	479
XapI	RAATTY	2 cut(s)	735, 1189
XcmI	CCANNNNNNNNNTGG	1 cut(s)	895
XmiI	GTMKAC	2 cut(s)	558, 972
XmnI	GAANNNNTTC	2 cut(s)	111, 186
XspI	CTAG	2 cut(s)	638, 1136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.