Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0017717

Physical Location & Seq

Genomic Coordinates Reverse (-)

47438706 .. 47439823

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0358500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAGTTCCTTGTCTGGAATCTTCAACGACCTCTCATTGCCGCCGCCGCTGTTGGCTTTGCTTCATTTTCTTCCGACTTCTCTCTCATACTGCCTTCTCACAAATCCAACCACTCTTCTACCTCCACCGACTTATCAACTTCTTCCTCATCATGCGTTTCAGCCATTTCGAATTCAAGTACCTGTTCCCAACATTAACTTCCCAATTCCCAATTCCGACTGCAATTCTGGTCCCAAATTGCTGTATTCTTTGGTTGCATCTTCCCCTGCTCTTCTTAAGTTGTATCACTCTGCAGACTTGGGCAAAGCGCCGAACCCAACTGCTTATAAACATGATATATCATCATCTACTTCCGTCCCTGAGGTCTCCTACAGATGGCATTTGCCTGAGCCAAATGCATTAGATGTTTCCGGTACCTCCGATTGTTCATCAGCAAAGATGAGGACTGTGGTGGTTTTGCTGGGATGGTTAGGACCAAAGCAAAAGCATCTTAAGAGGTATGCTGACTGGTATACTTCGCAGGGGTTTCACGCCATTACTTTTACTTTACCCATGGCTGAAATTCTTAAATACCAGCCTGGTGGTAAAGTGGAAGAGCATATTGACTTGCTTGTAACTCATTTGGCTGATTGGTTAGAAGAAGAGCCGGGAAAGAACTTACTTTTTCATACTTTTAGCAACACTGGATGGTTAACGTATGGTGTAATGTTGGAGAAGTTCCAGAAGAGGCACGATCCTTCAATAATGGGCAGGATTCGGGGATGCGTTGTGGATTCCGCACCTGTTGCAGCACCTGACCCGCAGGTCTGGGCCTCTGGTTTCTCTGCAGCCTTTCTGAAAAAGCATAGTGTAGCAACAAAAGGGACCACCAGAGTAGACGCTAGTGAGTCAGGCATGGATGTTTTGATTGACAGCAAAGGAGTGGCACCTAAACCTGCAGTAACTGAGGCAGCTTTGCTTTTAGTTTTGGAGAAGTTCTTTGAGGTGGTTTTGAATCTTCTTACAGTGAACAGGAGGCTTTCTGATATTTTGGGCTTACTGTCAGCACGACAACCAAGCTGTCCGCAATTATATATCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009610 GO:0009617 GO:0009620 GO:0009877 GO:0009987 GO:0010033 GO:0010941 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0036377 GO:0042221 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

360

Amino Acids

39.56

Weight (kDa)

7.69

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF829	PF05705	149 - 359	7.5e-42	Eukaryotic protein of unknown function (DUF829)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017717)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g24820
malus_domestica	MD01G1156100.v1.1 MD07G1224800.v1.1
prunus_persica	Prupe.2G253400_v2.0.a1
pyrus_communis	pycom01g17300
rosa_chinensis	RchiOBHm_Chr1g0370691
rosa_laevigata	RLG00000027017
rosa_multiflora	Rmu_sc0004550.1_g000011
rosa_roxburghii	Rroxscaffold_4G00286300
rosa_rugosa	Rorug01G0358500
rosa_samantha	Rh1DG363200
rosa_wichuraiana	Rw1G032400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AasI	GACNNNNNNGTC	1 cut(s)	803
Acc36I	ACCTGC	2 cut(s)	793, 943
Acc65I	GGTACC	1 cut(s)	413
AccB1I	GGYRCC	2 cut(s)	413, 925
AccI	GTMKAC	2 cut(s)	512, 876
AciI	CCGC	6 cut(s)	41, 44, 47, 777, 800, 1064
AclWI	GGATC	1 cut(s)	728
AcsI	RAATTY	2 cut(s)	171, 561
AfaI	GTAC	2 cut(s)	180, 415
AfiI	CCNNNNNNNGG	1 cut(s)	375
AflII	CTTAAG	2 cut(s)	275, 491
AgsI	TTSAA	4 cut(s)	25, 176, 741, 994
AjnI	CCWGG	1 cut(s)	577
AjuI	GAANNNNNNNTTGG	4 cut(s)	182, 196, 214, 228
AluBI	AGCT	2 cut(s)	953, 1059
AluI	AGCT	2 cut(s)	953, 1059
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	1 cut(s)	728
AlwNI	CAGNNNCTG	2 cut(s)	794, 944
AoxI	GGCC	1 cut(s)	810
ApeKI	GCWGC	3 cut(s)	788, 827, 950
ApoI	RAATTY	2 cut(s)	171, 561
Asp718I	GGTACC	1 cut(s)	413
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	4 cut(s)	230, 473, 810, 864
AsuC2I	CCSGG	1 cut(s)	648
AsuII	TTCGAA	1 cut(s)	169
AvaII	GGWCC	3 cut(s)	230, 473, 864
AxyI	CCTNAGG	1 cut(s)	360
BanI	GGYRCC	2 cut(s)	413, 925
BbvI	GCAGC	3 cut(s)	800, 839, 962
BccI	CCATC	3 cut(s)	369, 459, 681
BciT130I	CCWGG	1 cut(s)	579
BcnI	CCSGG	1 cut(s)	648
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	1 cut(s)	882
BfmI	CTRYAG	4 cut(s)	291, 370, 825, 936
BfoI	RGCGCY	1 cut(s)	311
BfrI	CTTAAG	2 cut(s)	275, 491
BfuAI	ACCTGC	2 cut(s)	793, 943
BisI	GCNGC	6 cut(s)	41, 44, 47, 789, 828, 951
BlsI	GCNGC	6 cut(s)	42, 45, 48, 790, 829, 952
Bme1390I	CCNGG	2 cut(s)	579, 648
Bme18I	GGWCC	3 cut(s)	230, 473, 864
BmgT120I	GGNCC	4 cut(s)	230, 473, 810, 864
BmiI	GGNNCC	4 cut(s)	232, 415, 865, 927
BmrFI	CCNGG	2 cut(s)	579, 648
BmsI	GCATC	3 cut(s)	266, 496, 752
Bpu10I	CCTNAGC	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	169
BpuMI	CCSGG	1 cut(s)	648
BsaI	GGTCTC	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	552
BsaWI	WCCGGW	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
Bse1I	ACTGG	2 cut(s)	512, 688
Bse21I	CCTNAGG	1 cut(s)	360
Bse3DI	GCAATG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	4 cut(s)	470, 692, 767, 904
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseMI	GCAATG	1 cut(s)	35
BseMII	CTCAG	3 cut(s)	351, 378, 936
BseNI	ACTGG	2 cut(s)	512, 688
BseXI	GCAGC	3 cut(s)	800, 839, 962
BseYI	CCCAGC	1 cut(s)	460
BshFI	GGCC	1 cut(s)	812
BshNI	GGYRCC	2 cut(s)	413, 925
BsiSI	CCGG	2 cut(s)	411, 647
BslFI	GGGAC	3 cut(s)	216, 341, 877
BslI	CCNNNNNNNGG	1 cut(s)	375
BsmAI	GTCTC	1 cut(s)	370
BsmFI	GGGAC	3 cut(s)	216, 341, 877
BsnI	GGCC	1 cut(s)	812
Bso31I	GGTCTC	1 cut(s)	370
Bsp119I	TTCGAA	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	733
Bsp19I	CCATGG	1 cut(s)	552
BspACI	CCGC	6 cut(s)	41, 44, 47, 777, 800, 1064
BspANI	GGCC	1 cut(s)	812
BspCNI	CTCAG	3 cut(s)	352, 379, 937
BspLI	GGNNCC	4 cut(s)	232, 415, 865, 927
BspMAI	CTGCAG	3 cut(s)	295, 829, 940
BspMI	ACCTGC	2 cut(s)	793, 943
BspPI	GGATC	1 cut(s)	728
BspQI	GCTCTTC	3 cut(s)	276, 588, 636
BspT104I	TTCGAA	1 cut(s)	169
BspT107I	GGYRCC	2 cut(s)	413, 925
BspTI	CTTAAG	2 cut(s)	275, 491
BspTNI	GGTCTC	1 cut(s)	370
BsrDI	GCAATG	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	512, 688
BssECI	CCNNGG	1 cut(s)	552
BssMI	GATC	1 cut(s)	733
BssNAI	GTATAC	1 cut(s)	513
BssT1I	CCWWGG	1 cut(s)	552
Bst1107I	GTATAC	1 cut(s)	513
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	3 cut(s)	448, 1006, 1041
Bst6I	CTCTTC	5 cut(s)	120, 276, 588, 636, 719
BstAFI	CTTAAG	2 cut(s)	275, 491
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstBI	TTCGAA	1 cut(s)	169
BstDEI	CTNAG	3 cut(s)	360, 387, 945
BstDSI	CCRYGG	1 cut(s)	552
BstF5I	GGATG	4 cut(s)	470, 692, 767, 904
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	1 cut(s)	736
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	1 cut(s)	733
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 785
BstNI	CCWGG	1 cut(s)	579
BstSCI	CCNGG	2 cut(s)	577, 646
BstSFI	CTRYAG	4 cut(s)	291, 370, 825, 936
BstV1I	GCAGC	3 cut(s)	800, 839, 962
BstXI	CCANNNNNNTGG	1 cut(s)	581
BstZ17I	GTATAC	1 cut(s)	513
Bsu36I	CCTNAGG	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	812
BtgI	CCRYGG	1 cut(s)	552
BtsCI	GGATG	4 cut(s)	470, 692, 767, 904
BtsIMutI	CAGTG	2 cut(s)	681, 1011
BveI	ACCTGC	2 cut(s)	793, 943
CaiI	CAGNNNCTG	2 cut(s)	794, 944
CfoI	GCGC	1 cut(s)	310
Cfr13I	GGNCC	4 cut(s)	230, 473, 810, 864
CseI	GACGC	1 cut(s)	887
Csp6I	GTAC	2 cut(s)	179, 414
CviAII	CATG	4 cut(s)	152, 332, 553, 895
CviQI	GTAC	2 cut(s)	179, 414
DdeI	CTNAG	3 cut(s)	360, 387, 945
DpnI	GATC	1 cut(s)	735
DpnII	GATC	1 cut(s)	733
DrdI	GACNNNNNNGTC	1 cut(s)	803
DseDI	GACNNNNNNGTC	1 cut(s)	803
Eam1104I	CTCTTC	5 cut(s)	120, 276, 588, 636, 719
EarI	CTCTTC	5 cut(s)	120, 276, 588, 636, 719
Eco130I	CCWWGG	1 cut(s)	552
Eco31I	GGTCTC	1 cut(s)	370
Eco47I	GGWCC	3 cut(s)	230, 473, 864
Eco81I	CCTNAGG	1 cut(s)	360
EcoRI	GAATTC	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	552
EcoT22I	ATGCAT	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	4 cut(s)	155, 335, 556, 898
FaqI	GGGAC	3 cut(s)	216, 341, 877
FatI	CATG	4 cut(s)	151, 331, 552, 894
FauI	CCCGC	1 cut(s)	807
FblI	GTMKAC	2 cut(s)	512, 876
Fnu4HI	GCNGC	6 cut(s)	41, 44, 47, 789, 828, 951
FokI	GGATG	4 cut(s)	477, 699, 774, 911
Fsp4HI	GCNGC	6 cut(s)	41, 44, 47, 789, 828, 951
FspBI	CTAG	1 cut(s)	882
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	6 cut(s)	41, 44, 47, 789, 828, 951
GsaI	CCCAGC	1 cut(s)	464
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	1 cut(s)	812
HapII	CCGG	2 cut(s)	411, 647
HgaI	GACGC	1 cut(s)	887
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	4 cut(s)	155, 335, 556, 898
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HincII	GTYRAC	1 cut(s)	693
HindII	GTYRAC	1 cut(s)	693
HinfI	GANTC	5 cut(s)	18, 754, 773, 887, 994
HpaI	GTTAAC	1 cut(s)	693
HpaII	CCGG	2 cut(s)	411, 647
Hpy166II	GTNNAC	4 cut(s)	513, 693, 877, 1009
Hpy188I	TCNGA	5 cut(s)	75, 217, 421, 837, 1024
Hpy188III	TCNNGA	2 cut(s)	15, 721
Hpy8I	GTNNAC	4 cut(s)	513, 693, 877, 1009
HpyAV	CCTTC	2 cut(s)	104, 747
HpyCH4III	ACNGT	3 cut(s)	448, 1006, 1041
HpyCH4IV	ACGT	1 cut(s)	695
HpyCH4V	TGCA	7 cut(s)	222, 257, 293, 398, 788, 827, 938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 785
HpyF3I	CTNAG	3 cut(s)	360, 387, 945
HpySE526I	ACGT	1 cut(s)	695
Hsp92II	CATG	4 cut(s)	155, 335, 556, 898
HspAI	GCGC	1 cut(s)	308
KpnI	GGTACC	1 cut(s)	417
KspAI	GTTAAC	1 cut(s)	693
Kzo9I	GATC	1 cut(s)	733
LguI	GCTCTTC	3 cut(s)	276, 588, 636
Lsp1109I	GCAGC	3 cut(s)	800, 839, 962
LweI	GCATC	3 cut(s)	266, 496, 752
MaeI	CTAG	1 cut(s)	882
MaeII	ACGT	1 cut(s)	695
MaeIII	GTNAC	2 cut(s)	613, 940
MalI	GATC	1 cut(s)	735
MboI	GATC	1 cut(s)	733
MluCI	AATT	7 cut(s)	171, 204, 211, 223, 236, 561, 1067
MlyI	GAGTC	1 cut(s)	896
MmeI	TCCRAC	4 cut(s)	98, 131, 240, 690
Mph1103I	ATGCAT	1 cut(s)	400
MseI	TTAA	6 cut(s)	195, 276, 492, 567, 692, 1081
MspA1I	CMGCKG	1 cut(s)	49
MspCI	CTTAAG	2 cut(s)	275, 491
MspI	CCGG	2 cut(s)	411, 647
MspR9I	CCNGG	2 cut(s)	579, 648
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	2 cut(s)	46, 785
NciI	CCSGG	1 cut(s)	648
NcoI	CCATGG	1 cut(s)	552
NdeII	GATC	1 cut(s)	733
NlaIII	CATG	4 cut(s)	155, 335, 556, 898
NlaIV	GGNNCC	4 cut(s)	232, 415, 865, 927
NsiI	ATGCAT	1 cut(s)	400
NspV	TTCGAA	1 cut(s)	169
PciSI	GCTCTTC	3 cut(s)	276, 588, 636
PfeI	GAWTC	4 cut(s)	18, 754, 773, 994
PkrI	GCNGC	6 cut(s)	42, 45, 48, 790, 829, 952
PleI	GAGTC	1 cut(s)	895
PpsI	GAGTC	1 cut(s)	895
PsiI	TTATAA	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	577
PspFI	CCCAGC	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	4 cut(s)	232, 415, 865, 927
PspPI	GGNCC	4 cut(s)	230, 473, 810, 864
PstI	CTGCAG	3 cut(s)	295, 829, 940
PstNI	CAGNNNCTG	2 cut(s)	794, 944
RsaI	GTAC	2 cut(s)	180, 415
RsaNI	GTAC	2 cut(s)	179, 414
SapI	GCTCTTC	3 cut(s)	276, 588, 636
SaqAI	TTAA	6 cut(s)	195, 276, 492, 567, 692, 1081
SatI	GCNGC	6 cut(s)	41, 44, 47, 789, 828, 951
Sau3AI	GATC	1 cut(s)	733
Sau96I	GGNCC	4 cut(s)	230, 473, 810, 864
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	2 cut(s)	579, 648
SfaNI	GCATC	3 cut(s)	266, 496, 752
SfcI	CTRYAG	4 cut(s)	291, 370, 825, 936
SfuI	TTCGAA	1 cut(s)	169
SinI	GGWCC	3 cut(s)	230, 473, 864
SmlI	CTYRAG	2 cut(s)	275, 491
SmoI	CTYRAG	2 cut(s)	275, 491
Sse9I	AATT	7 cut(s)	171, 204, 211, 223, 236, 561, 1067
SsiI	CCGC	6 cut(s)	41, 44, 47, 777, 800, 1064
SspMI	CTAG	1 cut(s)	882
StyD4I	CCNGG	2 cut(s)	577, 646
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	3 cut(s)	448, 1006, 1041
TaiI	ACGT	1 cut(s)	698
TaqI	TCGA	1 cut(s)	169
TasI	AATT	7 cut(s)	171, 204, 211, 223, 236, 561, 1067
TauI	GCSGC	3 cut(s)	43, 46, 49
TfiI	GAWTC	4 cut(s)	18, 754, 773, 994
Tru1I	TTAA	6 cut(s)	195, 276, 492, 567, 692, 1081
Tru9I	TTAA	6 cut(s)	195, 276, 492, 567, 692, 1081
TscAI	CASTG	2 cut(s)	688, 1011
TseI	GCWGC	3 cut(s)	788, 827, 950
TspDTI	ATGAA	3 cut(s)	53, 417, 656
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	2 cut(s)	688, 1011
Vha464I	CTTAAG	2 cut(s)	275, 491
VpaK11BI	GGWCC	3 cut(s)	230, 473, 864
XapI	RAATTY	2 cut(s)	171, 561
XmiI	GTMKAC	2 cut(s)	512, 876
XspI	CTAG	1 cut(s)	882
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.