RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g24820 |
| malus_domestica | MD01G1156100.v1.1 MD07G1224800.v1.1 |
| prunus_persica | Prupe.2G253400_v2.0.a1 |
| pyrus_communis | pycom01g17300 |
| rosa_chinensis | RchiOBHm_Chr1g0370691 |
| rosa_laevigata | RLG00000027017 |
| rosa_multiflora | Rmu_sc0004550.1_g000011 |
| rosa_roxburghii | Rroxscaffold_4G00286300 |
| rosa_rugosa | Rorug01G0358500 |
| rosa_samantha | Rh1DG363200 |
| rosa_wichuraiana | Rw1G032400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 966 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1079 |
| AccI | GTMKAC | 2 cut(s) | 558, 1662 |
| AccII | CGCG | 2 cut(s) | 1391, 1954 |
| AciI | CCGC | 7 cut(s) | 672, 1175, 1389, 1700, 1739, 1952, 1954 |
| AclWI | GGATC | 7 cut(s) | 893, 962, 1090, 1161, 1355, 1986, 1999 |
| AcsI | RAATTY | 5 cut(s) | 863, 937, 1368, 1425, 1879 |
| AcuI | CTGAAG | 5 cut(s) | 21, 1052, 1086, 1335, 1812 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 150, 481, 986, 1079 |
| AflIII | ACRYGT | 1 cut(s) | 345 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 16, 48 |
| Alw21I | GWGCWC | 2 cut(s) | 243, 373 |
| AlwI | GGATC | 7 cut(s) | 893, 962, 1090, 1161, 1355, 1986, 1999 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2046 |
| AoxI | GGCC | 2 cut(s) | 202, 1008 |
| ApoI | RAATTY | 5 cut(s) | 863, 937, 1368, 1425, 1879 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 111, 186 |
| AspLEI | GCGC | 1 cut(s) | 1393 |
| AspS9I | GGNCC | 2 cut(s) | 203, 1009 |
| AsuC2I | CCSGG | 1 cut(s) | 1696 |
| AsuHPI | GGTGA | 8 cut(s) | 226, 431, 496, 583, 1080, 1227, 1378, 1564 |
| AsuII | TTCGAA | 3 cut(s) | 180, 256, 756 |
| BaeGI | GKGCMC | 1 cut(s) | 969 |
| BamHI | GGATCC | 1 cut(s) | 1991 |
| BanI | GGYRCC | 1 cut(s) | 966 |
| BanII | GRGCYC | 1 cut(s) | 243 |
| BbsI | GAAGAC | 2 cut(s) | 780, 1820 |
| Bbv12I | GWGCWC | 2 cut(s) | 243, 373 |
| BccI | CCATC | 8 cut(s) | 223, 313, 508, 1099, 1415, 1720, 1907, 1982 |
| BceAI | ACGGC | 2 cut(s) | 217, 423 |
| BciVI | GTATCC | 1 cut(s) | 1970 |
| BclI | TGATCA | 1 cut(s) | 817 |
| BcnI | CCSGG | 1 cut(s) | 1696 |
| BfaI | CTAG | 6 cut(s) | 638, 788, 884, 1223, 1818, 1826 |
| BfmI | CTRYAG | 2 cut(s) | 292, 1440 |
| BfuI | GTATCC | 1 cut(s) | 1970 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1583 |
| Bme1390I | CCNGG | 1 cut(s) | 1696 |
| BmgT120I | GGNCC | 2 cut(s) | 203, 1009 |
| BmiI | GGNNCC | 3 cut(s) | 968, 1704, 1993 |
| BmrFI | CCNGG | 1 cut(s) | 1696 |
| BmrI | ACTGGG | 1 cut(s) | 63 |
| BmsI | GCATC | 8 cut(s) | 860, 923, 1054, 1174, 1744, 1775, 2008, 2033 |
| BmuI | ACTGGG | 1 cut(s) | 63 |
| BpiI | GAAGAC | 2 cut(s) | 780, 1820 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 83, 115, 230, 262 |
| Bpu14I | TTCGAA | 3 cut(s) | 180, 256, 756 |
| BpuEI | CTTGAG | 1 cut(s) | 604 |
| BpuMI | CCSGG | 1 cut(s) | 1696 |
| Bsa29I | ATCGAT | 1 cut(s) | 1464 |
| BsaAI | YACGTR | 1 cut(s) | 346 |
| BsaJI | CCNNGG | 4 cut(s) | 102, 1695, 1758, 1952 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1911, 1941 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 150, 481, 986, 1079 |
| Bse118I | RCCGGY | 1 cut(s) | 441 |
| Bse1I | ACTGG | 1 cut(s) | 58 |
| Bse3DI | GCAATG | 4 cut(s) | 94, 942, 1343, 1638 |
| BseCI | ATCGAT | 1 cut(s) | 1464 |
| BseDI | CCNNGG | 4 cut(s) | 102, 1695, 1758, 1952 |
| BseGI | GGATG | 4 cut(s) | 10, 852, 1735, 1790 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 150, 481, 986, 1079 |
| BseMI | GCAATG | 4 cut(s) | 94, 942, 1343, 1638 |
| BseMII | CTCAG | 4 cut(s) | 962, 1194, 1340, 1841 |
| BseNI | ACTGG | 1 cut(s) | 58 |
| BseRI | GAGGAG | 5 cut(s) | 814, 1129, 1817, 1932, 1937 |
| BseSI | GKGCMC | 1 cut(s) | 969 |
| Bsh1236I | CGCG | 2 cut(s) | 1391, 1954 |
| BshFI | GGCC | 2 cut(s) | 204, 1010 |
| BshNI | GGYRCC | 1 cut(s) | 966 |
| BshVI | ATCGAT | 1 cut(s) | 1464 |
| BsiHKAI | GWGCWC | 2 cut(s) | 243, 373 |
| BsiSI | CCGG | 4 cut(s) | 442, 1583, 1616, 1695 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 150, 481, 986, 1079 |
| BsmI | GAATGC | 1 cut(s) | 1510 |
| BsnI | GGCC | 2 cut(s) | 204, 1010 |
| Bsp119I | TTCGAA | 3 cut(s) | 180, 256, 756 |
| Bsp1286I | GDGCHC | 3 cut(s) | 243, 373, 969 |
| Bsp19I | CCATGG | 1 cut(s) | 102 |
| BspACI | CCGC | 7 cut(s) | 672, 1175, 1389, 1700, 1739, 1952, 1954 |
| BspANI | GGCC | 2 cut(s) | 204, 1010 |
| BspCNI | CTCAG | 4 cut(s) | 961, 1195, 1341, 1842 |
| BspDI | ATCGAT | 1 cut(s) | 1464 |
| BspFNI | CGCG | 2 cut(s) | 1391, 1954 |
| BspLI | GGNNCC | 3 cut(s) | 968, 1704, 1993 |
| BspMAI | CTGCAG | 2 cut(s) | 296, 1444 |
| BspPI | GGATC | 7 cut(s) | 893, 962, 1090, 1161, 1355, 1986, 1999 |
| BspQI | GCTCTTC | 2 cut(s) | 248, 492 |
| BspT104I | TTCGAA | 3 cut(s) | 180, 256, 756 |
| BspT107I | GGYRCC | 1 cut(s) | 966 |
| BsrDI | GCAATG | 4 cut(s) | 94, 942, 1343, 1638 |
| BsrFI | RCCGGY | 1 cut(s) | 441 |
| BsrI | ACTGG | 1 cut(s) | 58 |
| BssAI | RCCGGY | 1 cut(s) | 441 |
| BssECI | CCNNGG | 4 cut(s) | 102, 1695, 1758, 1952 |
| BssT1I | CCWWGG | 2 cut(s) | 102, 1758 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1184, 1640, 1769 |
| BstBAI | YACGTR | 1 cut(s) | 346 |
| BstBI | TTCGAA | 3 cut(s) | 180, 256, 756 |
| BstC8I | GCNNGC | 2 cut(s) | 447, 660 |
| BstDEI | CTNAG | 8 cut(s) | 64, 948, 1203, 1336, 1349, 1850, 2027, 2058 |
| BstDSI | CCRYGG | 2 cut(s) | 102, 1952 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 479 |
| BstF5I | GGATG | 4 cut(s) | 10, 852, 1735, 1790 |
| BstFNI | CGCG | 2 cut(s) | 1391, 1954 |
| BstHHI | GCGC | 1 cut(s) | 1393 |
| BstNSI | RCATGY | 1 cut(s) | 978 |
| BstSCI | CCNGG | 1 cut(s) | 1694 |
| BstSFI | CTRYAG | 2 cut(s) | 292, 1440 |
| BstSLI | GKGCMC | 1 cut(s) | 969 |
| BstUI | CGCG | 2 cut(s) | 1391, 1954 |
| BstV2I | GAAGAC | 2 cut(s) | 780, 1820 |
| BstX2I | RGATCY | 2 cut(s) | 898, 1991 |
| BstYI | RGATCY | 2 cut(s) | 898, 1991 |
| Bsu15I | ATCGAT | 1 cut(s) | 1464 |
| BsuI | GTATCC | 1 cut(s) | 1970 |
| BsuRI | GGCC | 2 cut(s) | 204, 1010 |
| BsuTUI | ATCGAT | 1 cut(s) | 1464 |
| BtgI | CCRYGG | 2 cut(s) | 102, 1952 |
| BtsCI | GGATG | 4 cut(s) | 10, 852, 1735, 1790 |
| BtsI | GCAGTG | 1 cut(s) | 2021 |
| BtsIMutI | CAGTG | 3 cut(s) | 956, 1028, 2021 |
| Cac8I | GCNNGC | 2 cut(s) | 447, 660 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2046 |
| CfoI | GCGC | 1 cut(s) | 1393 |
| Cfr10I | RCCGGY | 1 cut(s) | 441 |
| Cfr13I | GGNCC | 2 cut(s) | 203, 1009 |
| Cfr42I | CCGCGG | 1 cut(s) | 1955 |
| ClaI | ATCGAT | 1 cut(s) | 1464 |
| CseI | GACGC | 1 cut(s) | 1640 |
| CviAII | CATG | 7 cut(s) | 103, 145, 733, 975, 1006, 1291, 1358 |
| DdeI | CTNAG | 8 cut(s) | 64, 948, 1203, 1336, 1349, 1850, 2027, 2058 |
| EciI | GGCGGA | 1 cut(s) | 687 |
| Ecl136II | GAGCTC | 1 cut(s) | 241 |
| Eco130I | CCWWGG | 2 cut(s) | 102, 1758 |
| Eco24I | GRGCYC | 1 cut(s) | 243 |
| Eco32I | GATATC | 2 cut(s) | 580, 1243 |
| Eco53kI | GAGCTC | 1 cut(s) | 241 |
| Eco57I | CTGAAG | 5 cut(s) | 21, 1052, 1086, 1335, 1812 |
| EcoICRI | GAGCTC | 1 cut(s) | 241 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 479 |
| EcoRI | GAATTC | 2 cut(s) | 1368, 1879 |
| EcoRV | GATATC | 2 cut(s) | 580, 1243 |
| EcoT14I | CCWWGG | 2 cut(s) | 102, 1758 |
| EcoT38I | GRGCYC | 1 cut(s) | 243 |
| ErhI | CCWWGG | 2 cut(s) | 102, 1758 |
| FaeI | CATG | 7 cut(s) | 106, 148, 736, 978, 1009, 1294, 1361 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 566, 598, 761, 793 |
| FatI | CATG | 7 cut(s) | 102, 144, 732, 974, 1005, 1290, 1357 |
| FauI | CCCGC | 2 cut(s) | 1732, 1959 |
| FauNDI | CATATG | 2 cut(s) | 83, 928 |
| FbaI | TGATCA | 1 cut(s) | 817 |
| FblI | GTMKAC | 2 cut(s) | 558, 1662 |
| FokI | GGATG | 4 cut(s) | 17, 839, 1742, 1797 |
| FriOI | GRGCYC | 1 cut(s) | 243 |
| FspBI | CTAG | 6 cut(s) | 638, 788, 884, 1223, 1818, 1826 |
| GlaI | GCGC | 1 cut(s) | 1392 |
| HaeIII | GGCC | 2 cut(s) | 204, 1010 |
| HapII | CCGG | 4 cut(s) | 442, 1583, 1616, 1695 |
| HgaI | GACGC | 1 cut(s) | 1640 |
| HhaI | GCGC | 1 cut(s) | 1393 |
| Hin1II | CATG | 7 cut(s) | 106, 148, 736, 978, 1009, 1294, 1361 |
| Hin6I | GCGC | 1 cut(s) | 1391 |
| HinP1I | GCGC | 1 cut(s) | 1391 |
| HincII | GTYRAC | 1 cut(s) | 1197 |
| HindII | GTYRAC | 1 cut(s) | 1197 |
| HindIII | AAGCTT | 4 cut(s) | 110, 161, 995, 1975 |
| HpaI | GTTAAC | 1 cut(s) | 1197 |
| HpaII | CCGG | 4 cut(s) | 442, 1583, 1616, 1695 |
| HphI | GGTGA | 8 cut(s) | 226, 431, 496, 583, 1080, 1227, 1378, 1564 |
| Hpy166II | GTNNAC | 5 cut(s) | 559, 989, 1197, 1235, 1663 |
| Hpy188I | TCNGA | 4 cut(s) | 1105, 1792, 1851, 2061 |
| Hpy188III | TCNNGA | 6 cut(s) | 130, 191, 278, 583, 1073, 1373 |
| Hpy8I | GTNNAC | 5 cut(s) | 559, 989, 1197, 1235, 1663 |
| HpyAV | CCTTC | 5 cut(s) | 568, 1601, 1787, 1867, 1974 |
| HpyCH4IV | ACGT | 1 cut(s) | 345 |
| HpyF3I | CTNAG | 8 cut(s) | 64, 948, 1203, 1336, 1349, 1850, 2027, 2058 |
| HpySE526I | ACGT | 1 cut(s) | 345 |
| Hsp92II | CATG | 7 cut(s) | 106, 148, 736, 978, 1009, 1294, 1361 |
| HspAI | GCGC | 1 cut(s) | 1391 |
| Ksp22I | TGATCA | 1 cut(s) | 817 |
| KspAI | GTTAAC | 1 cut(s) | 1197 |
| KspI | CCGCGG | 1 cut(s) | 1955 |
| LguI | GCTCTTC | 2 cut(s) | 248, 492 |
| LmnI | GCTCC | 7 cut(s) | 104, 322, 519, 1116, 1122, 1322, 1445 |
| LweI | GCATC | 8 cut(s) | 860, 923, 1054, 1174, 1744, 1775, 2008, 2033 |
| MaeI | CTAG | 6 cut(s) | 638, 788, 884, 1223, 1818, 1826 |
| MaeII | ACGT | 1 cut(s) | 345 |
| MaeIII | GTNAC | 4 cut(s) | 1272, 1339, 1384, 1552 |
| MfeI | CAATTG | 2 cut(s) | 1449, 1557 |
| MflI | RGATCY | 2 cut(s) | 898, 1991 |
| MhlI | GDGCHC | 3 cut(s) | 243, 373, 969 |
| MlyI | GAGTC | 2 cut(s) | 77, 1045 |
| MmeI | TCCRAC | 3 cut(s) | 1060, 1452, 1779 |
| MroXI | GAANNNNTTC | 2 cut(s) | 111, 186 |
| MseI | TTAA | 3 cut(s) | 159, 477, 1196 |
| MslI | CAYNNNNRTG | 1 cut(s) | 927 |
| MspA1I | CMGCKG | 2 cut(s) | 1202, 1954 |
| MspI | CCGG | 4 cut(s) | 442, 1583, 1616, 1695 |
| MspR9I | CCNGG | 1 cut(s) | 1696 |
| MunI | CAATTG | 2 cut(s) | 1449, 1557 |
| Mva1269I | GAATGC | 1 cut(s) | 1510 |
| MvnI | CGCG | 2 cut(s) | 1391, 1954 |
| NciI | CCSGG | 1 cut(s) | 1696 |
| NcoI | CCATGG | 1 cut(s) | 102 |
| NdeI | CATATG | 2 cut(s) | 83, 928 |
| NlaIII | CATG | 7 cut(s) | 106, 148, 736, 978, 1009, 1294, 1361 |
| NlaIV | GGNNCC | 3 cut(s) | 968, 1704, 1993 |
| NmuCI | GTSAC | 3 cut(s) | 1339, 1384, 1552 |
| NspI | RCATGY | 1 cut(s) | 978 |
| NspV | TTCGAA | 3 cut(s) | 180, 256, 756 |
| PciSI | GCTCTTC | 2 cut(s) | 248, 492 |
| PctI | GAATGC | 1 cut(s) | 1510 |
| PdmI | GAANNNNTTC | 2 cut(s) | 111, 186 |
| PfeI | GAWTC | 8 cut(s) | 76, 187, 253, 261, 274, 1133, 1475, 2062 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1079 |
| PleI | GAGTC | 2 cut(s) | 76, 1044 |
| PpsI | GAGTC | 2 cut(s) | 76, 1044 |
| Ppu21I | YACGTR | 1 cut(s) | 346 |
| Psp124BI | GAGCTC | 1 cut(s) | 243 |
| PspN4I | GGNNCC | 3 cut(s) | 968, 1704, 1993 |
| PspPI | GGNCC | 2 cut(s) | 203, 1009 |
| PstI | CTGCAG | 2 cut(s) | 296, 1444 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2046 |
| PsuI | RGATCY | 2 cut(s) | 898, 1991 |
| PvuII | CAGCTG | 1 cut(s) | 1202 |
| RseI | CAYNNNNRTG | 1 cut(s) | 927 |
| SacI | GAGCTC | 1 cut(s) | 243 |
| SacII | CCGCGG | 1 cut(s) | 1955 |
| SapI | GCTCTTC | 2 cut(s) | 248, 492 |
| SaqAI | TTAA | 3 cut(s) | 159, 477, 1196 |
| Sau96I | GGNCC | 2 cut(s) | 203, 1009 |
| SchI | GAGTC | 2 cut(s) | 77, 1045 |
| ScrFI | CCNGG | 1 cut(s) | 1696 |
| SduI | GDGCHC | 3 cut(s) | 243, 373, 969 |
| SfaNI | GCATC | 8 cut(s) | 860, 923, 1054, 1174, 1744, 1775, 2008, 2033 |
| SfcI | CTRYAG | 2 cut(s) | 292, 1440 |
| Sfr303I | CCGCGG | 1 cut(s) | 1955 |
| SfuI | TTCGAA | 3 cut(s) | 180, 256, 756 |
| SgrBI | CCGCGG | 1 cut(s) | 1955 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 927 |
| SmlI | CTYRAG | 1 cut(s) | 583 |
| SmoI | CTYRAG | 1 cut(s) | 583 |
| SsiI | CCGC | 7 cut(s) | 672, 1175, 1389, 1700, 1739, 1952, 1954 |
| SspI | AATATT | 1 cut(s) | 403 |
| SspMI | CTAG | 6 cut(s) | 638, 788, 884, 1223, 1818, 1826 |
| SstI | GAGCTC | 1 cut(s) | 243 |
| StyD4I | CCNGG | 1 cut(s) | 1694 |
| StyI | CCWWGG | 2 cut(s) | 102, 1758 |
| TaiI | ACGT | 1 cut(s) | 348 |
| TaqI | TCGA | 7 cut(s) | 180, 256, 756, 868, 934, 1464, 2005 |
| TauI | GCSGC | 1 cut(s) | 1178 |
| TfiI | GAWTC | 8 cut(s) | 76, 187, 253, 261, 274, 1133, 1475, 2062 |
| Tru1I | TTAA | 3 cut(s) | 159, 477, 1196 |
| Tru9I | TTAA | 3 cut(s) | 159, 477, 1196 |
| TscAI | CASTG | 3 cut(s) | 956, 1035, 2028 |
| TseFI | GTSAC | 3 cut(s) | 1339, 1384, 1552 |
| Tsp45I | GTSAC | 3 cut(s) | 1339, 1384, 1552 |
| TspDTI | ATGAA | 3 cut(s) | 708, 876, 1961 |
| TspGWI | ACGGA | 1 cut(s) | 238 |
| TspRI | CASTG | 3 cut(s) | 956, 1035, 2028 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1079 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 479 |
| XapI | RAATTY | 5 cut(s) | 863, 937, 1368, 1425, 1879 |
| XceI | RCATGY | 1 cut(s) | 978 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1585 |
| XmiI | GTMKAC | 2 cut(s) | 558, 1662 |
| XmnI | GAANNNNTTC | 2 cut(s) | 111, 186 |
| XspI | CTAG | 6 cut(s) | 638, 788, 884, 1223, 1818, 1826 |