Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007531

Physical Location & Seq

Genomic Coordinates Reverse (-)

30166465 .. 30167650

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G327600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCGATTGGGCAAGTTTTGCATGAGTTGGAAGTGAACGTGTCTGCAAGCCAAGCATGGGATCTCTACGGCTCACTTGAACTGGCAAAACTCGTGGAACAAGCACTTCCAAATCTGATTGACAAAGTTGAACTCATACAAGGTGATGGAGGGGTTGGCACTATTCTCAAAGTAACATTTGCATCTGGTTCTGGTGTGCATAAGGAAAAGTTCACAAAAGTGGATCATGAAAAGCGGGTCAAGGAAGTAGAGGTGATTGAAGGTGGACTTGTGGAGCTTGGATTGAGCCTTTACAGAGTTCGCTTCGAAATCATTGAGAAAGTAGAAGCTGATTATTCCTCCTGCTGCTGCATCATCAAAACCACAATTGAGTTTGATGTCAAGGAAGACGCTGCTCCCAACACCTCCTCCCTTGTGTCTATCGACCCTTTCAAAAACATTGCAGAGGTCGCAAAGACCCATCTCCTCAACAAACAATCTCTACCTCTACCCAGGCCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

168

Amino Acids

18.29

Weight (kDa)

5.14

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g34110 FvH4_7g34120
malus_domestica	MD09G1243700.v1.1
prunus_persica	Prupe.2G327600_v2.0.a1
pyrus_communis	pycom09g16230
rosa_chinensis	RchiOBHm_Chr1g0384401 RchiOBHm_Chr1g0384411 RchiOBHm_Chr1g0384431
rosa_laevigata	RLG00000026041 RLG00000026042
rosa_multiflora	Rmu_sc0013987.1_g000002 Rmu_sc0016737.1_g000011 Rmu_sc0016737.1_g000012
rosa_roxburghii	Rroxscaffold_4G00276710
rosa_rugosa	Rorug01G0446800 Rorug01G0447400.1 Rorug01G0447600
rosa_samantha	Rh1AG472800 Rh1AG472900 Rh1BG430700 Rh1CG443600 Rh1CG443700 Rh1CG444000 Rh1DG463300
rosa_wichuraiana	Rw1G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	235
AclWI	GGATC	2 cut(s)	69, 231
AfiI	CCNNNNNNNGG	1 cut(s)	58
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	4 cut(s)	80, 131, 260, 433
AjnI	CCWGG	1 cut(s)	491
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	2 cut(s)	277, 329
AluI	AGCT	2 cut(s)	277, 329
AlwI	GGATC	2 cut(s)	69, 231
AoxI	GGCC	1 cut(s)	494
ApeKI	GCWGC	3 cut(s)	345, 348, 392
AspS9I	GGNCC	1 cut(s)	495
AsuHPI	GGTGA	2 cut(s)	155, 265
AsuII	TTCGAA	1 cut(s)	306
BauI	CACGAG	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	393
BbvI	GCAGC	3 cut(s)	332, 335, 379
BccI	CCATC	2 cut(s)	140, 468
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	493
BisI	GCNGC	3 cut(s)	346, 349, 393
BlsI	GCNGC	3 cut(s)	347, 350, 394
Bme1390I	CCNGG	1 cut(s)	493
BmgT120I	GGNCC	1 cut(s)	495
BmrFI	CCNGG	1 cut(s)	493
BmsI	GCATC	2 cut(s)	191, 360
BpiI	GAAGAC	1 cut(s)	393
Bpu14I	TTCGAA	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	491
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	493
BseDI	CCNNGG	1 cut(s)	491
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	1 cut(s)	438
BseNI	ACTGG	1 cut(s)	87
BseRI	GAGGAG	2 cut(s)	397, 455
BseXI	GCAGC	3 cut(s)	332, 335, 379
BshFI	GGCC	1 cut(s)	496
BslI	CCNNNNNNNGG	1 cut(s)	58
BsnI	GGCC	1 cut(s)	496
Bsp119I	TTCGAA	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	61, 223
BspACI	CCGC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	496
BspHI	TCATGA	1 cut(s)	226
BspPI	GGATC	2 cut(s)	69, 231
BspT104I	TTCGAA	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	491
BssMI	GATC	2 cut(s)	61, 223
BssSI	CACGAG	1 cut(s)	92
Bst2BI	CACGAG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	493
BstAPI	GCANNNNNTGC	1 cut(s)	19
BstBI	TTCGAA	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	501
BstKTI	GATC	2 cut(s)	64, 226
BstMBI	GATC	2 cut(s)	61, 223
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 53, 449
BstNI	CCWGG	1 cut(s)	493
BstSCI	CCNGG	1 cut(s)	491
BstV1I	GCAGC	3 cut(s)	332, 335, 379
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	496
Cac8I	GCNNGC	1 cut(s)	49
CciI	TCATGA	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	495
CseI	GACGC	1 cut(s)	398
CspCI	CAANNNNNGTGG	2 cut(s)	75, 110
CviAII	CATG	3 cut(s)	23, 57, 227
CviJI	RGCY	6 cut(s)	51, 72, 277, 288, 329, 496
CviKI_1	RGCY	6 cut(s)	51, 72, 277, 288, 329, 496
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	2 cut(s)	63, 225
DpnII	GATC	2 cut(s)	61, 223
EcoO109I	RGGNCCY	1 cut(s)	495
EcoRII	CCWGG	1 cut(s)	491
FaeI	CATG	3 cut(s)	26, 60, 230
FaiI	YATR	5 cut(s)	24, 58, 137, 201, 228
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FatI	CATG	3 cut(s)	22, 56, 226
FauI	CCCGC	1 cut(s)	228
Fnu4HI	GCNGC	3 cut(s)	346, 349, 393
Fsp4HI	GCNGC	3 cut(s)	346, 349, 393
GluI	GCNGC	3 cut(s)	346, 349, 393
HaeIII	GGCC	1 cut(s)	496
HgaI	GACGC	1 cut(s)	398
Hin1II	CATG	3 cut(s)	26, 60, 230
HphI	GGTGA	2 cut(s)	155, 265
Hpy166II	GTNNAC	3 cut(s)	37, 213, 266
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	3 cut(s)	37, 213, 266
HpyAV	CCTTC	1 cut(s)	254
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	6 cut(s)	22, 47, 182, 199, 351, 443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 53, 449
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	26, 60, 230
Kzo9I	GATC	2 cut(s)	61, 223
LmnI	GCTCC	2 cut(s)	274, 400
LpnPI	CCDG	5 cut(s)	68, 171, 177, 355, 478
Lsp1109I	GCAGC	3 cut(s)	332, 335, 379
LweI	GCATC	2 cut(s)	191, 360
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	63, 225
MboI	GATC	2 cut(s)	61, 223
MboII	GAAGA	1 cut(s)	398
MfeI	CAATTG	1 cut(s)	366
MflI	RGATCY	1 cut(s)	61
MluCI	AATT	1 cut(s)	366
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	8 cut(s)	143, 244, 349, 415, 418, 439, 476, 495
MslI	CAYNNNNRTG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	493
MunI	CAATTG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	493
MwoI	GCNNNNNNNGC	3 cut(s)	19, 53, 449
NdeII	GATC	2 cut(s)	61, 223
NlaIII	CATG	3 cut(s)	26, 60, 230
NspV	TTCGAA	1 cut(s)	306
OliI	CACNNNNGTG	1 cut(s)	218
PagI	TCATGA	1 cut(s)	226
PkrI	GCNGC	3 cut(s)	347, 350, 394
Psp6I	CCWGG	1 cut(s)	491
PspGI	CCWGG	1 cut(s)	491
PspPI	GGNCC	1 cut(s)	495
PsuI	RGATCY	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	218
SatI	GCNGC	3 cut(s)	346, 349, 393
Sau3AI	GATC	2 cut(s)	61, 223
Sau96I	GGNCC	1 cut(s)	495
ScrFI	CCNGG	1 cut(s)	493
SetI	ASST	9 cut(s)	42, 145, 255, 265, 279, 331, 407, 450, 487
SfaNI	GCATC	2 cut(s)	191, 360
SfuI	TTCGAA	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	366
SsiI	CCGC	1 cut(s)	235
StyD4I	CCNGG	1 cut(s)	491
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	306, 423
TasI	AATT	1 cut(s)	366
TseI	GCWGC	3 cut(s)	345, 348, 392
TspDTI	ATGAA	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.