Rh1CG444000

S-norcoclaurine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0007531
Physical Location & Seq
Reverse (-)
69606484 .. 69607036
553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG444000.1

Sequence Viewer

Length: 474 bp
ATGGCTGTTGGCGGGCAAGTTTCGCATGAGTTAGAGGTTCAAGTGTGTGCAAGCCAAGCATGGGAGCTGATGGGCACACTTGAGTTCGCAAAACTCATCCAACAAACCCTCACCGATGTAATTGACAATATTGAAGTCGTACAAGGCGATGGACAAGCCGGAACTATTATCAAATTAACATTTGCACCGGGAGTACCGGGACCTAGATGGCAAAAGGAGAAGTTCACAATGGTAGATAATGAAAAGCGGGTGAAAGAAGTGGAGGTGATTGAAGGTGGATATCTGGAATTAGGGTTTACCCTTTTCCGAGTTCGAGGCGAAATCATAGAGTCCTCCTCCTGCTGTTGCATTATCAAATCAACCATTAAGTATGAGCTCAAGGAAGATGCTGCTGCCAACGTCTCACTTGTGTCCGCGCACCCTTTCGCAAAAATTGCAGAGATCGCCAAAAACCATCTCCTCCTCCAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

157

Amino Acids

17.26

Weight (kDa)

5.1

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 5 - 154 6.9e-13 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 416
AciI CCGC 3 cut(s) 12, 247, 414
AfaI GTAC 2 cut(s) 141, 195
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 3 cut(s) 41, 134, 272
AluBI AGCT 2 cut(s) 67, 376
AluI AGCT 2 cut(s) 67, 376
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 1 cut(s) 406
ApeKI GCWGC 2 cut(s) 389, 392
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 1 cut(s) 200
AsuC2I CCSGG 2 cut(s) 189, 198
AsuHPI GGTGA 3 cut(s) 103, 262, 277
AvaII GGWCC 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 77
BanII GRGCYC 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 2 cut(s) 376, 379
BccI CCATC 4 cut(s) 64, 143, 201, 462
BcnI CCSGG 2 cut(s) 189, 198
BcoDI GTCTC 1 cut(s) 406
BfaI CTAG 1 cut(s) 204
BisI GCNGC 2 cut(s) 390, 393
BlsI GCNGC 2 cut(s) 391, 394
Bme1390I CCNGG 2 cut(s) 189, 198
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 2 cut(s) 189, 198
BmsI GCATC 1 cut(s) 376
BplI GAGNNNNNCTC 2 cut(s) 320, 352
BpuEI CTTGAG 2 cut(s) 101, 362
BpuMI CCSGG 2 cut(s) 189, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 61
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 61
BseRI GAGGAG 3 cut(s) 325, 449, 452
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 2 cut(s) 376, 379
Bsh1236I CGCG 1 cut(s) 416
BsiHKAI GWGCWC 1 cut(s) 378
BsiSI CCGG 3 cut(s) 159, 188, 197
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 406
BsmBI CGTCTC 1 cut(s) 406
BsmFI GGGAC 1 cut(s) 213
Bsp1286I GDGCHC 2 cut(s) 77, 378
Bsp143I GATC 1 cut(s) 441
BspACI CCGC 3 cut(s) 12, 247, 414
BspFNI CGCG 1 cut(s) 416
BspLI GGNNCC 1 cut(s) 201
BssMI GATC 1 cut(s) 441
BstAPI GCANNNNNTGC 1 cut(s) 434
BstC8I GCNNGC 2 cut(s) 14, 52
BstF5I GGATG 1 cut(s) 96
BstFNI CGCG 1 cut(s) 416
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 1 cut(s) 444
BstMAI GTCTC 1 cut(s) 406
BstMBI GATC 1 cut(s) 441
BstMWI GCNNNNNNNGC 4 cut(s) 22, 56, 434, 443
BstSCI CCNGG 2 cut(s) 187, 196
BstSLI GKGCMC 1 cut(s) 77
BstUI CGCG 1 cut(s) 416
BstV1I GCAGC 2 cut(s) 376, 379
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 96
Cac8I GCNNGC 2 cut(s) 14, 52
CfoI GCGC 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 2 cut(s) 140, 194
CviAII CATG 2 cut(s) 26, 60
CviJI RGCY 5 cut(s) 5, 54, 67, 158, 376
CviKI_1 RGCY 5 cut(s) 5, 54, 67, 158, 376
CviQI GTAC 2 cut(s) 140, 194
DpnI GATC 1 cut(s) 443
DpnII GATC 1 cut(s) 441
Ecl136II GAGCTC 1 cut(s) 376
Eco24I GRGCYC 1 cut(s) 378
Eco32I GATATC 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 376
EcoICRI GAGCTC 1 cut(s) 376
EcoO109I RGGNCCY 1 cut(s) 200
EcoRV GATATC 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 378
Esp3I CGTCTC 1 cut(s) 406
FaeI CATG 2 cut(s) 29, 63
FaiI YATR 4 cut(s) 27, 61, 326, 372
FaqI GGGAC 1 cut(s) 213
FatI CATG 2 cut(s) 25, 59
FauI CCCGC 2 cut(s) 5, 240
Fnu4HI GCNGC 2 cut(s) 390, 393
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 1 cut(s) 378
Fsp4HI GCNGC 2 cut(s) 390, 393
FspBI CTAG 1 cut(s) 204
GlaI GCGC 1 cut(s) 417
GluI GCNGC 2 cut(s) 390, 393
HapII CCGG 3 cut(s) 159, 188, 197
HhaI GCGC 1 cut(s) 418
Hin1II CATG 2 cut(s) 29, 63
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HinfI GANTC 1 cut(s) 329
HpaII CCGG 3 cut(s) 159, 188, 197
HphI GGTGA 3 cut(s) 103, 262, 277
Hpy166II GTNNAC 2 cut(s) 225, 297
Hpy188I TCNGA 1 cut(s) 308
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 2 cut(s) 225, 297
HpyAV CCTTC 1 cut(s) 266
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 4 cut(s) 50, 185, 348, 437
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 56, 434, 443
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 2 cut(s) 29, 63
HspAI GCGC 1 cut(s) 416
Kzo9I GATC 1 cut(s) 441
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 5 cut(s) 172, 201, 210, 269, 352
Lsp1109I GCAGC 2 cut(s) 376, 379
LweI GCATC 1 cut(s) 376
MaeI CTAG 1 cut(s) 204
MaeII ACGT 1 cut(s) 399
MalI GATC 1 cut(s) 443
MboI GATC 1 cut(s) 441
MboII GAAGA 1 cut(s) 395
MhlI GDGCHC 2 cut(s) 77, 378
MluCI AATT 5 cut(s) 120, 173, 287, 432, 469
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 8 cut(s) 28, 119, 256, 308, 343, 346, 470, 473
MseI TTAA 3 cut(s) 176, 366, 472
MspI CCGG 3 cut(s) 159, 188, 197
MspR9I CCNGG 2 cut(s) 189, 198
MvnI CGCG 1 cut(s) 416
MwoI GCNNNNNNNGC 4 cut(s) 22, 56, 434, 443
NciI CCSGG 2 cut(s) 189, 198
NdeII GATC 1 cut(s) 441
NlaIII CATG 2 cut(s) 29, 63
NlaIV GGNNCC 1 cut(s) 201
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PkrI GCNGC 2 cut(s) 391, 394
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
PpuMI RGGWCCY 1 cut(s) 200
Psp124BI GAGCTC 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 200
PspPPI RGGWCCY 1 cut(s) 200
RsaI GTAC 2 cut(s) 141, 195
RsaNI GTAC 2 cut(s) 140, 194
SacI GAGCTC 1 cut(s) 378
SaqAI TTAA 3 cut(s) 176, 366, 472
SatI GCNGC 2 cut(s) 390, 393
Sau3AI GATC 1 cut(s) 441
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 2 cut(s) 189, 198
SduI GDGCHC 2 cut(s) 77, 378
SetI ASST 7 cut(s) 39, 69, 205, 267, 277, 378, 402
SfaNI GCATC 1 cut(s) 376
SinI GGWCC 1 cut(s) 200
SmlI CTYRAG 2 cut(s) 80, 377
SmoI CTYRAG 2 cut(s) 80, 377
Sse9I AATT 5 cut(s) 120, 173, 287, 432, 469
SsiI CCGC 3 cut(s) 12, 247, 414
SspI AATATT 1 cut(s) 130
SspMI CTAG 1 cut(s) 204
SstI GAGCTC 1 cut(s) 378
StyD4I CCNGG 2 cut(s) 187, 196
TaiI ACGT 1 cut(s) 402
TaqI TCGA 1 cut(s) 313
TasI AATT 5 cut(s) 120, 173, 287, 432, 469
Tru1I TTAA 3 cut(s) 176, 366, 472
Tru9I TTAA 3 cut(s) 176, 366, 472
TseI GCWGC 2 cut(s) 389, 392
TspDTI ATGAA 1 cut(s) 255
VpaK11BI GGWCC 1 cut(s) 200
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.