RchiOBHm_Chr1g0384431

S-norcoclaurine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007531
Physical Location & Seq
Reverse (-)
68279655 .. 68280045
391 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60726

Sequence Viewer

Length: 312 bp
ATGGTTGTTGGCGGGCAAGTTTTGCATGAGTTAGAGGTCAAGTGTGTGCGCGCAAGCCAAGCATGGGAGCTGACGGACACACTTGAGCTCGCTAAACTCATCCAACAAACCCTCACCGATATAATTGACAATATTGAAGTCGTACAAGGCGATGGACAAGCCGGAACTATTATCAAATTAACATTTGCACCGGGAGTACCGGGCCCTAGATGGCAAGAGGAGAAGTTCACAATGGTAGATAATGAAAAGCGGGTGAAAGAAGTAGAGGTAATTGAAGGTGGATCTCTGGAATTAGGGTTTACCCTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

103

Amino Acids

11.4

Weight (kDa)

4.5

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 51
AciI CCGC 2 cut(s) 12, 250
AclWI GGATC 1 cut(s) 289
AfaI GTAC 2 cut(s) 144, 198
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 2 cut(s) 137, 275
AluBI AGCT 2 cut(s) 70, 88
AluI AGCT 2 cut(s) 70, 88
Alw21I GWGCWC 1 cut(s) 90
AlwI GGATC 1 cut(s) 289
AoxI GGCC 1 cut(s) 202
ApaI GGGCCC 1 cut(s) 206
AspLEI GCGC 2 cut(s) 51, 53
AspS9I GGNCC 2 cut(s) 202, 203
AsuC2I CCSGG 2 cut(s) 192, 201
AsuHPI GGTGA 2 cut(s) 106, 265
BaeGI GKGCMC 1 cut(s) 206
BanII GRGCYC 2 cut(s) 90, 206
Bbv12I GWGCWC 1 cut(s) 90
BccI CCATC 2 cut(s) 146, 204
BcnI CCSGG 2 cut(s) 192, 201
BfaI CTAG 1 cut(s) 207
Bme1390I CCNGG 2 cut(s) 192, 201
BmgT120I GGNCC 2 cut(s) 202, 203
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 2 cut(s) 192, 201
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 2 cut(s) 192, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 64
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 64
BsePI GCGCGC 1 cut(s) 49
BseRI GAGGAG 1 cut(s) 233
BseSI GKGCMC 1 cut(s) 206
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 3 cut(s) 162, 191, 200
BslI CCNNNNNNNGG 1 cut(s) 64
BsnI GGCC 1 cut(s) 204
Bsp120I GGGCCC 1 cut(s) 202
Bsp1286I GDGCHC 2 cut(s) 90, 206
Bsp143I GATC 1 cut(s) 281
BspACI CCGC 2 cut(s) 12, 250
BspANI GGCC 1 cut(s) 204
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 1 cut(s) 289
BssHII GCGCGC 1 cut(s) 49
BssMI GATC 1 cut(s) 281
BstAPI GCANNNNNTGC 1 cut(s) 22
BstC8I GCNNGC 4 cut(s) 14, 51, 55, 90
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 2 cut(s) 51, 53
BstKTI GATC 1 cut(s) 284
BstMBI GATC 1 cut(s) 281
BstMWI GCNNNNNNNGC 2 cut(s) 22, 59
BstSCI CCNGG 2 cut(s) 190, 199
BstSLI GKGCMC 1 cut(s) 206
BstUI CGCG 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BsuRI GGCC 1 cut(s) 204
BtgZI GCGATG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 99
Cac8I GCNNGC 4 cut(s) 14, 51, 55, 90
CfoI GCGC 2 cut(s) 51, 53
Cfr13I GGNCC 2 cut(s) 202, 203
Csp6I GTAC 2 cut(s) 143, 197
CviAII CATG 2 cut(s) 26, 63
CviJI RGCY 5 cut(s) 57, 70, 88, 161, 204
CviKI_1 RGCY 5 cut(s) 57, 70, 88, 161, 204
CviQI GTAC 2 cut(s) 143, 197
DpnI GATC 1 cut(s) 283
DpnII GATC 1 cut(s) 281
Ecl136II GAGCTC 1 cut(s) 88
Eco24I GRGCYC 2 cut(s) 90, 206
Eco53kI GAGCTC 1 cut(s) 88
EcoICRI GAGCTC 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 203
EcoT38I GRGCYC 2 cut(s) 90, 206
FaeI CATG 2 cut(s) 29, 66
FaiI YATR 3 cut(s) 27, 64, 122
FatI CATG 2 cut(s) 25, 62
FauI CCCGC 2 cut(s) 5, 243
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 2 cut(s) 90, 206
FspBI CTAG 1 cut(s) 207
GlaI GCGC 2 cut(s) 50, 52
HaeIII GGCC 1 cut(s) 204
HapII CCGG 3 cut(s) 162, 191, 200
HhaI GCGC 2 cut(s) 51, 53
Hin1II CATG 2 cut(s) 29, 66
Hin6I GCGC 2 cut(s) 49, 51
HinP1I GCGC 2 cut(s) 49, 51
HpaII CCGG 3 cut(s) 162, 191, 200
HphI GGTGA 2 cut(s) 106, 265
Hpy166II GTNNAC 2 cut(s) 228, 300
Hpy188I TCNGA 1 cut(s) 311
Hpy188III TCNNGA 1 cut(s) 287
Hpy8I GTNNAC 2 cut(s) 228, 300
HpyAV CCTTC 1 cut(s) 269
HpyCH4V TGCA 2 cut(s) 25, 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 59
Hsp92II CATG 2 cut(s) 29, 66
HspAI GCGC 2 cut(s) 49, 51
Kzo9I GATC 1 cut(s) 281
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 4 cut(s) 175, 204, 213, 272
MaeI CTAG 1 cut(s) 207
MalI GATC 1 cut(s) 283
MboI GATC 1 cut(s) 281
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 2 cut(s) 90, 206
MluCI AATT 4 cut(s) 123, 176, 270, 290
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 4 cut(s) 28, 122, 211, 259
MseI TTAA 1 cut(s) 179
MspI CCGG 3 cut(s) 162, 191, 200
MspR9I CCNGG 2 cut(s) 192, 201
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 2 cut(s) 22, 59
NciI CCSGG 2 cut(s) 192, 201
NdeII GATC 1 cut(s) 281
NlaIII CATG 2 cut(s) 29, 66
NlaIV GGNNCC 1 cut(s) 204
PauI GCGCGC 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 147
Psp124BI GAGCTC 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 204
PspOMI GGGCCC 1 cut(s) 202
PspPI GGNCC 2 cut(s) 202, 203
PsuI RGATCY 1 cut(s) 281
PteI GCGCGC 1 cut(s) 49
RsaI GTAC 2 cut(s) 144, 198
RsaNI GTAC 2 cut(s) 143, 197
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 179
Sau3AI GATC 1 cut(s) 281
Sau96I GGNCC 2 cut(s) 202, 203
ScrFI CCNGG 2 cut(s) 192, 201
SduI GDGCHC 2 cut(s) 90, 206
SetI ASST 5 cut(s) 39, 72, 90, 270, 280
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 4 cut(s) 123, 176, 270, 290
SsiI CCGC 2 cut(s) 12, 250
SspI AATATT 1 cut(s) 133
SspMI CTAG 1 cut(s) 207
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 2 cut(s) 190, 199
TasI AATT 4 cut(s) 123, 176, 270, 290
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 258
TspGWI ACGGA 1 cut(s) 89
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.