Prupe.3G008800_v2.0.a1

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0017590
Physical Location & Seq
Reverse (-)
536421 .. 537667
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G008800.1

Sequence Viewer

Length: 1020 bp
ATGGAATTTGAAGACGAGGTTGGTAATTATTATAGGTCGTCGTACAAACCATCGATCAAGAAGGAAGTGGATGAGACTGCAACATCAGAGATTCATGGGGAAGTTGAAGAAGAAGTAGATGGGGTTGAGAGGAGGCTCAAAGAGTTGAAGAACTTTGATGAGCTTCCTAACCCTCCTTTTAATCATCACTTCATCAACAAGCCATATAATATACAAGCATCGCTAGCCAAAAGGATTCAAGGAGAATGGGAATCAATAAGACAACTTCCCCCAAGTTCAATTTTGGTTAGGGGTTATACTTCAAGGATTGATCTTATGAGAGCTGTGATAGTTGGTGGAGGTGACTTCATACGTCTTCCAAAACGTGACAAGATCAAGATAATGGGTCGAAAAGGTGTCGTGATAGTTGATGATGATCGAGAAGATGATGAGATGATAACTTGTCGAGAAGGTCCTCCTTATCACCAAGGCTTGTTCTTCTTCGACATATTCTTTCCAAGCAATTATCCGACAGAGCCTCCCCAACTCTTTTTCCGCTCTTATGGCCTTGATCTAAACCCTAACTTGCCCAAAAACGGCAAAGTTTTGCTTGACGCCAATCTACAACAGTCAAACATATGGGACACACTTGTTTCAATTCGGGAATTGATTCTCGTGGATGGTATTGATCGTGACAGAGAGATATCTTCGAAATTAAGCAAAAGGGTTTTTGTGCAAACTTGGGAAGCCATGCTGCATATGTTGGAGTGCGCACCTATCCATTTTCAAGCTTTAGTTTTGGGGTATTTTCGAGTAAGATCTCATCAGATTCTACTCGACTACAAAGCTTATGCCGATGTTCAGGATCCGGCGATGAAGTTGTTATTCTTCAAGCTTGTGAAGGCCTTTGAAACTAATGGAACTTATTGCCGACATCATTATAATCAGAAGGAGTATGATTTGGCATTAGAAAAAAAGGAGCCTTTAGAAGATTATAGCAATAATATTCGTAGTTTTTGGTACCCTTCACTAAAAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
UQ_con

Protein Analysis

340

Amino Acids

39.68

Weight (kDa)

5.8

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017590)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26991
malus_domestica MD17G1277900.v1.1
prunus_persica Prupe.3G008800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487241
rosa_laevigata RLG00000023020
rosa_multiflora Rmu_ssc0000366.1_g000013
rosa_roxburghii Rroxscaffold_6G00394980
rosa_samantha Rh3AG280500 Rh3BG316400 Rh3CG314500 Rh3DG312000
rosa_wichuraiana Rw3G024840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 921
Acc16I TGCGCA 1 cut(s) 751
Acc65I GGTACC 1 cut(s) 999
AccB1I GGYRCC 1 cut(s) 999
AccBSI CCGCTC 1 cut(s) 537
AciI CCGC 1 cut(s) 535
AclWI GGATC 2 cut(s) 839, 852
AcsI RAATTY 1 cut(s) 5
AcyI GRCGYC 1 cut(s) 594
AfaI GTAC 2 cut(s) 44, 1001
AfiI CCNNNNNNNGG 1 cut(s) 575
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AluBI AGCT 5 cut(s) 163, 323, 770, 827, 874
AluI AGCT 5 cut(s) 163, 323, 770, 827, 874
Alw26I GTCTC 1 cut(s) 68
AlwI GGATC 2 cut(s) 839, 852
AoxI GGCC 2 cut(s) 544, 882
ApeKI GCWGC 1 cut(s) 733
ApoI RAATTY 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 648
Asp718I GGTACC 1 cut(s) 999
AspLEI GCGC 1 cut(s) 752
AspS9I GGNCC 1 cut(s) 452
AsuHPI GGTGA 2 cut(s) 353, 455
AsuII TTCGAA 1 cut(s) 689
AsuNHI GCTAGC 1 cut(s) 223
AvaII GGWCC 1 cut(s) 452
BamHI GGATCC 1 cut(s) 844
BanI GGYRCC 1 cut(s) 999
BauI CACGAG 1 cut(s) 653
BbsI GAAGAC 2 cut(s) 18, 347
BbvI GCAGC 1 cut(s) 720
BccI CCATC 3 cut(s) 58, 113, 653
BceAI ACGGC 1 cut(s) 592
BcoDI GTCTC 1 cut(s) 68
BfaI CTAG 1 cut(s) 224
BglII AGATCT 1 cut(s) 797
BisI GCNGC 1 cut(s) 734
BlsI GCNGC 1 cut(s) 735
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 3 cut(s) 846, 960, 1001
BmsI GCATC 1 cut(s) 227
BmtI GCTAGC 1 cut(s) 227
BpiI GAAGAC 2 cut(s) 18, 347
Bpu14I TTCGAA 1 cut(s) 689
Bsa29I ATCGAT 1 cut(s) 53
BsaBI GATNNNNATC 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 594
BsaJI CCNNGG 1 cut(s) 466
BsaXI ACNNNNNCTCC 2 cut(s) 502, 532
Bsc4I CCNNNNNNNGG 1 cut(s) 575
Bse8I GATNNNNATC 1 cut(s) 414
BseCI ATCGAT 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 466
BseGI GGATG 2 cut(s) 76, 664
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 1 cut(s) 575
BseRI GAGGAG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 720
BshFI GGCC 2 cut(s) 546, 884
BshNI GGYRCC 1 cut(s) 999
BshVI ATCGAT 1 cut(s) 53
BsiSI CCGG 1 cut(s) 848
BslFI GGGAC 1 cut(s) 635
BslI CCNNNNNNNGG 1 cut(s) 575
BsmAI GTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 635
BsnI GGCC 2 cut(s) 546, 884
Bsp119I TTCGAA 1 cut(s) 689
Bsp143I GATC 8 cut(s) 54, 310, 372, 415, 550, 667, 797, 844
BspACI CCGC 1 cut(s) 535
BspANI GGCC 2 cut(s) 546, 884
BspDI ATCGAT 1 cut(s) 53
BspLI GGNNCC 3 cut(s) 846, 960, 1001
BspOI GCTAGC 1 cut(s) 227
BspPI GGATC 2 cut(s) 839, 852
BspT104I TTCGAA 1 cut(s) 689
BspT107I GGYRCC 1 cut(s) 999
BsrBI CCGCTC 1 cut(s) 537
BssECI CCNNGG 1 cut(s) 466
BssMI GATC 8 cut(s) 54, 310, 372, 415, 550, 667, 797, 844
BssNI GRCGYC 1 cut(s) 594
BssSI CACGAG 1 cut(s) 653
BssT1I CCWWGG 1 cut(s) 466
Bst2BI CACGAG 1 cut(s) 653
Bst4CI ACNGT 1 cut(s) 609
BstACI GRCGYC 1 cut(s) 594
BstBI TTCGAA 1 cut(s) 689
BstC8I GCNNGC 1 cut(s) 225
BstF5I GGATG 2 cut(s) 76, 664
BstHHI GCGC 1 cut(s) 752
BstKTI GATC 8 cut(s) 57, 313, 375, 418, 553, 670, 800, 847
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 8 cut(s) 54, 310, 372, 415, 550, 667, 797, 844
BstMWI GCNNNNNNNGC 2 cut(s) 224, 543
BstV1I GCAGC 1 cut(s) 720
BstV2I GAAGAC 2 cut(s) 18, 347
BstX2I RGATCY 2 cut(s) 797, 844
BstYI RGATCY 2 cut(s) 797, 844
Bsu15I ATCGAT 1 cut(s) 53
BsuRI GGCC 2 cut(s) 546, 884
BsuTUI ATCGAT 1 cut(s) 53
BtgZI GCGATG 2 cut(s) 204, 866
BtsCI GGATG 2 cut(s) 76, 664
Cac8I GCNNGC 1 cut(s) 225
CfoI GCGC 1 cut(s) 752
Cfr13I GGNCC 1 cut(s) 452
ClaI ATCGAT 1 cut(s) 53
CseI GACGC 1 cut(s) 602
Csp6I GTAC 2 cut(s) 43, 1000
CviAII CATG 2 cut(s) 95, 730
CviQI GTAC 2 cut(s) 43, 1000
DpnI GATC 8 cut(s) 56, 312, 374, 417, 552, 669, 799, 846
DpnII GATC 8 cut(s) 54, 310, 372, 415, 550, 667, 797, 844
Eco130I CCWWGG 1 cut(s) 466
Eco147I AGGCCT 1 cut(s) 884
Eco32I GATATC 1 cut(s) 684
Eco47I GGWCC 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 452
EcoRV GATATC 1 cut(s) 684
EcoT14I CCWWGG 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 466
FaeI CATG 2 cut(s) 98, 733
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FaqI GGGAC 1 cut(s) 635
FatI CATG 2 cut(s) 94, 729
FauNDI CATATG 2 cut(s) 617, 738
Fnu4HI GCNGC 1 cut(s) 734
FokI GGATG 2 cut(s) 83, 671
Fsp4HI GCNGC 1 cut(s) 734
FspAI RTGCGCAY 1 cut(s) 751
FspBI CTAG 1 cut(s) 224
FspI TGCGCA 1 cut(s) 751
GlaI GCGC 1 cut(s) 751
GluI GCNGC 1 cut(s) 734
HaeIII GGCC 2 cut(s) 546, 884
HapII CCGG 1 cut(s) 848
HgaI GACGC 1 cut(s) 602
HhaI GCGC 1 cut(s) 752
Hin1I GRCGYC 1 cut(s) 594
Hin1II CATG 2 cut(s) 98, 733
Hin6I GCGC 1 cut(s) 750
HinP1I GCGC 1 cut(s) 750
HindIII AAGCTT 3 cut(s) 768, 825, 872
HinfI GANTC 5 cut(s) 91, 235, 251, 649, 808
HpaII CCGG 1 cut(s) 848
HphI GGTGA 2 cut(s) 353, 455
Hpy188I TCNGA 4 cut(s) 88, 510, 807, 927
Hpy188III TCNNGA 8 cut(s) 58, 376, 400, 419, 446, 641, 671, 842
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 5 cut(s) 55, 443, 874, 922, 1014
HpyCH4III ACNGT 1 cut(s) 609
HpyCH4IV ACGT 2 cut(s) 352, 364
HpyCH4V TGCA 3 cut(s) 80, 715, 736
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 543
HpySE526I ACGT 2 cut(s) 352, 364
Hsp92I GRCGYC 1 cut(s) 594
Hsp92II CATG 2 cut(s) 98, 733
HspAI GCGC 1 cut(s) 750
KpnI GGTACC 1 cut(s) 1003
Kzo9I GATC 8 cut(s) 54, 310, 372, 415, 550, 667, 797, 844
LmnI GCTCC 1 cut(s) 958
LpnPI CCDG 2 cut(s) 827, 861
Lsp1109I GCAGC 1 cut(s) 720
LweI GCATC 1 cut(s) 227
MaeI CTAG 1 cut(s) 224
MaeII ACGT 2 cut(s) 352, 364
MaeIII GTNAC 3 cut(s) 341, 365, 671
MalI GATC 8 cut(s) 56, 312, 374, 417, 552, 669, 799, 846
MbiI CCGCTC 1 cut(s) 537
MboI GATC 8 cut(s) 54, 310, 372, 415, 550, 667, 797, 844
MflI RGATCY 2 cut(s) 797, 844
MluCI AATT 7 cut(s) 5, 25, 279, 502, 636, 644, 692
MmeI TCCRAC 2 cut(s) 533, 723
MnlI CCTC 7 cut(s) 10, 123, 126, 183, 332, 465, 528
MroXI GAANNNNTTC 1 cut(s) 648
MseI TTAA 2 cut(s) 180, 695
MspI CCGG 1 cut(s) 848
MwoI GCNNNNNNNGC 2 cut(s) 224, 543
NdeI CATATG 2 cut(s) 617, 738
NdeII GATC 8 cut(s) 54, 310, 372, 415, 550, 667, 797, 844
NheI GCTAGC 1 cut(s) 223
NlaIII CATG 2 cut(s) 98, 733
NlaIV GGNNCC 3 cut(s) 846, 960, 1001
NmuCI GTSAC 3 cut(s) 341, 365, 671
NsbI TGCGCA 1 cut(s) 751
NspV TTCGAA 1 cut(s) 689
PceI AGGCCT 1 cut(s) 884
PdmI GAANNNNTTC 1 cut(s) 648
PfeI GAWTC 5 cut(s) 91, 235, 251, 649, 808
PkrI GCNGC 1 cut(s) 735
PpuMI RGGWCCY 1 cut(s) 452
PsiI TTATAA 1 cut(s) 921
Psp5II RGGWCCY 1 cut(s) 452
PspN4I GGNNCC 3 cut(s) 846, 960, 1001
PspPI GGNCC 1 cut(s) 452
PspPPI RGGWCCY 1 cut(s) 452
PsuI RGATCY 2 cut(s) 797, 844
RsaI GTAC 2 cut(s) 44, 1001
RsaNI GTAC 2 cut(s) 43, 1000
SaqAI TTAA 2 cut(s) 180, 695
SatI GCNGC 1 cut(s) 734
Sau3AI GATC 8 cut(s) 54, 310, 372, 415, 550, 667, 797, 844
Sau96I GGNCC 1 cut(s) 452
SfaNI GCATC 1 cut(s) 227
SfuI TTCGAA 1 cut(s) 689
SinI GGWCC 1 cut(s) 452
Sse9I AATT 7 cut(s) 5, 25, 279, 502, 636, 644, 692
SseBI AGGCCT 1 cut(s) 884
SsiI CCGC 1 cut(s) 535
SspI AATATT 1 cut(s) 985
SspMI CTAG 1 cut(s) 224
StuI AGGCCT 1 cut(s) 884
StyI CCWWGG 1 cut(s) 466
TaaI ACNGT 1 cut(s) 609
TaiI ACGT 2 cut(s) 355, 367
TaqI TCGA 8 cut(s) 53, 388, 418, 445, 483, 689, 790, 816
TasI AATT 7 cut(s) 5, 25, 279, 502, 636, 644, 692
TfiI GAWTC 5 cut(s) 91, 235, 251, 649, 808
Tru1I TTAA 2 cut(s) 180, 695
Tru9I TTAA 2 cut(s) 180, 695
TseFI GTSAC 3 cut(s) 341, 365, 671
TseI GCWGC 1 cut(s) 733
Tsp45I GTSAC 3 cut(s) 341, 365, 671
TspDTI ATGAA 4 cut(s) 83, 181, 337, 869
VpaK11BI GGWCC 1 cut(s) 452
XapI RAATTY 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 648
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.