Rh3DG312000

Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0017590
Physical Location & Seq
Reverse (-)
33523803 .. 33524801
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG312000.1

Sequence Viewer

Length: 999 bp
ATGGGCATCAGGGATAGTTTTTATGAATATGGAGGGTTTGATAATCTTAACTACACACCAAAACCAACCTCAACGATGGTACCTGACGAGAATATCCCAGAACCAGAACCAAAGTTGTACGGAGAGATCGAAGAAATACAATCTGTGGTTGAGAGAAAGTTCCAAGAGTTCAAGAACTTTGACATACTAGGTTATTACCCTAATGATCATCACTTTGTTTACAGGAGAGGAAAACCACGTATTGAAAGTGAATGGGAATTTATCCGTGTTAGACTACCACCGGAACCCAAACTTGCTGGTTCGAATTTTGTTAGGGTTTATGACCAGAGGATTGATCTTATGAGTGTTATGATAGTTGGTCGGGAAAGTCCTCCTTATCACCAAGGCTTGTTTTTCTTTGACATATTCTTTCCCAGCAATTATTTCAAACTGCCTCAGCAGGAAACCGAGGATGTTCCCCCACTCTTTTACCATTCTTTTGACTTTGATTTGAACCCGAACTTGCGTAAAAACGGCACCGTTTCGCTCGACAAGACACAAAAGTGCAAGAACACATTGGAGTTACTCTCTTCACTTAAAGATCTGGTTGTGAATGACAAATCCTACATTGATGCCGAAAAGGGCATGAAATCAAACAGAAAGGTTTTCATGCAGACTTTTGAGTCCATGCTTAAGATGCTCAAGCGCCCACCTAGGCCGTTTAAAGATTTTGTGCTGGGGTATTTTCGAACAAGAGCTCATGATATTCTTCTCAACTATAAAGCTTGTGCTGATCTTGAAGATAATGCAATGAACTTGTTATTCTTCAAGCTGGTGAGGGCATTTGAAGCTAACGGAACTTATTGCCAGCATCATTATAATCAGAAGAAGTACGATCGGGCATTGAAAGAAGAAAAGGAGCTCTTAAACCAGAGCCGGGAGAAATATGGATATGAAAAATTTTTGTACTCACCACCAAAGATGAACAAAGCAAAGGATTGGCTTTATTTTGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
UQ_con

Protein Analysis

332

Amino Acids

39.49

Weight (kDa)

8.16

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017590)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26991
malus_domestica MD17G1277900.v1.1
prunus_persica Prupe.3G008800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487241
rosa_laevigata RLG00000023020
rosa_multiflora Rmu_ssc0000366.1_g000013
rosa_roxburghii Rroxscaffold_6G00394980
rosa_samantha Rh3AG280500 Rh3BG316400 Rh3CG314500 Rh3DG312000
rosa_wichuraiana Rw3G024840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 858
AasI GACNNNNNNGTC 1 cut(s) 661
Acc65I GGTACC 1 cut(s) 79
AccB1I GGYRCC 2 cut(s) 79, 515
AcsI RAATTY 3 cut(s) 257, 304, 938
AfaI GTAC 4 cut(s) 81, 119, 872, 947
AfiI CCNNNNNNNGG 1 cut(s) 916
AflII CTTAAG 1 cut(s) 671
AgsI TTSAA 8 cut(s) 172, 245, 427, 493, 779, 808, 827, 886
AleI CACNNNNGTG 1 cut(s) 541
AluBI AGCT 5 cut(s) 737, 764, 811, 830, 901
AluI AGCT 5 cut(s) 737, 764, 811, 830, 901
Alw21I GWGCWC 2 cut(s) 739, 903
AoxI GGCC 1 cut(s) 695
ApoI RAATTY 3 cut(s) 257, 304, 938
Asp718I GGTACC 1 cut(s) 79
AspA2I CCTAGG 1 cut(s) 692
AspLEI GCGC 1 cut(s) 687
AsuC2I CCSGG 1 cut(s) 917
AsuHPI GGTGA 3 cut(s) 371, 826, 942
AsuII TTCGAA 2 cut(s) 302, 727
AvrII CCTAGG 1 cut(s) 692
BaeI ACNNNNGTAYC 2 cut(s) 63, 96
BanI GGYRCC 2 cut(s) 79, 515
BanII GRGCYC 2 cut(s) 739, 903
Bbv12I GWGCWC 2 cut(s) 739, 903
BbvCI CCTCAGC 1 cut(s) 435
BccI CCATC 1 cut(s) 70
BceAI ACGGC 2 cut(s) 529, 682
BclI TGATCA 1 cut(s) 205
BcnI CCSGG 1 cut(s) 917
BfaI CTAG 2 cut(s) 188, 693
BfoI RGCGCY 1 cut(s) 688
BfrI CTTAAG 1 cut(s) 671
BglII AGATCT 1 cut(s) 580
BlnI CCTAGG 1 cut(s) 692
Bme1390I CCNGG 1 cut(s) 917
BmiI GGNNCC 3 cut(s) 81, 285, 517
BmrFI CCNGG 1 cut(s) 917
BmsI GCATC 4 cut(s) 15, 601, 666, 859
BplI GAGNNNNNCTC 2 cut(s) 551, 583
Bpu10I CCTNAGC 1 cut(s) 435
Bpu14I TTCGAA 2 cut(s) 302, 727
BpuEI CTTGAG 1 cut(s) 665
BpuMI CCSGG 1 cut(s) 917
BsaAI YACGTR 1 cut(s) 239
BsaJI CCNNGG 3 cut(s) 382, 447, 692
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 1 cut(s) 916
Bse3DI GCAATG 1 cut(s) 795
BseDI CCNNGG 3 cut(s) 382, 447, 692
BseGI GGATG 1 cut(s) 457
BseLI CCNNNNNNNGG 1 cut(s) 916
BseMI GCAATG 1 cut(s) 795
BseMII CTCAG 1 cut(s) 449
BseYI CCCAGC 2 cut(s) 413, 715
Bsh1285I CGRYCG 1 cut(s) 877
BshFI GGCC 1 cut(s) 697
BshNI GGYRCC 2 cut(s) 79, 515
BsiEI CGRYCG 1 cut(s) 877
BsiHKAI GWGCWC 2 cut(s) 739, 903
BsiSI CCGG 2 cut(s) 281, 916
BslI CCNNNNNNNGG 1 cut(s) 916
BsnI GGCC 1 cut(s) 697
Bsp119I TTCGAA 2 cut(s) 302, 727
Bsp1286I GDGCHC 2 cut(s) 739, 903
Bsp143I GATC 6 cut(s) 126, 205, 334, 580, 772, 874
BspANI GGCC 1 cut(s) 697
BspCNI CTCAG 1 cut(s) 448
BspHI TCATGA 1 cut(s) 739
BspLI GGNNCC 3 cut(s) 81, 285, 517
BspT104I TTCGAA 2 cut(s) 302, 727
BspT107I GGYRCC 2 cut(s) 79, 515
BspTI CTTAAG 1 cut(s) 671
BsrDI GCAATG 1 cut(s) 795
BssECI CCNNGG 3 cut(s) 382, 447, 692
BssMI GATC 6 cut(s) 126, 205, 334, 580, 772, 874
BssT1I CCWWGG 2 cut(s) 382, 692
Bst4CI ACNGT 1 cut(s) 520
Bst6I CTCTTC 1 cut(s) 574
BstAFI CTTAAG 1 cut(s) 671
BstBAI YACGTR 1 cut(s) 239
BstBI TTCGAA 2 cut(s) 302, 727
BstC8I GCNNGC 1 cut(s) 848
BstDEI CTNAG 1 cut(s) 435
BstF5I GGATG 1 cut(s) 457
BstH2I RGCGCY 1 cut(s) 688
BstHHI GCGC 1 cut(s) 687
BstKTI GATC 6 cut(s) 129, 208, 337, 583, 775, 877
BstMBI GATC 6 cut(s) 126, 205, 334, 580, 772, 874
BstMCI CGRYCG 1 cut(s) 877
BstMWI GCNNNNNNNGC 2 cut(s) 676, 827
BstSCI CCNGG 1 cut(s) 915
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
BsuRI GGCC 1 cut(s) 697
BtsCI GGATG 1 cut(s) 457
Cac8I GCNNGC 1 cut(s) 848
CciI TCATGA 1 cut(s) 739
CfoI GCGC 1 cut(s) 687
Csp6I GTAC 4 cut(s) 80, 118, 871, 946
CviAII CATG 4 cut(s) 625, 649, 667, 740
CviJI RGCY 9 cut(s) 387, 697, 737, 764, 811, 830, 901, 915, 982
CviKI_1 RGCY 9 cut(s) 387, 697, 737, 764, 811, 830, 901, 915, 982
CviQI GTAC 4 cut(s) 80, 118, 871, 946
DdeI CTNAG 1 cut(s) 435
DpnI GATC 6 cut(s) 128, 207, 336, 582, 774, 876
DpnII GATC 6 cut(s) 126, 205, 334, 580, 772, 874
DraI TTTAAA 1 cut(s) 703
DrdI GACNNNNNNGTC 1 cut(s) 661
DseDI GACNNNNNNGTC 1 cut(s) 661
Eam1104I CTCTTC 1 cut(s) 574
EarI CTCTTC 1 cut(s) 574
Ecl136II GAGCTC 2 cut(s) 737, 901
Eco130I CCWWGG 2 cut(s) 382, 692
Eco24I GRGCYC 2 cut(s) 739, 903
Eco53kI GAGCTC 2 cut(s) 737, 901
EcoICRI GAGCTC 2 cut(s) 737, 901
EcoT14I CCWWGG 2 cut(s) 382, 692
EcoT38I GRGCYC 2 cut(s) 739, 903
ErhI CCWWGG 2 cut(s) 382, 692
FaeI CATG 4 cut(s) 628, 652, 670, 743
FalI AAGNNNNNCTT 4 cut(s) 358, 390, 887, 919
FatI CATG 4 cut(s) 624, 648, 666, 739
FbaI TGATCA 1 cut(s) 205
FokI GGATG 1 cut(s) 464
FriOI GRGCYC 2 cut(s) 739, 903
FspBI CTAG 2 cut(s) 188, 693
GlaI GCGC 1 cut(s) 686
GsaI CCCAGC 2 cut(s) 417, 719
HaeII RGCGCY 1 cut(s) 688
HaeIII GGCC 1 cut(s) 697
HapII CCGG 2 cut(s) 281, 916
HhaI GCGC 1 cut(s) 687
Hin1II CATG 4 cut(s) 628, 652, 670, 743
Hin6I GCGC 1 cut(s) 685
HinP1I GCGC 1 cut(s) 685
HindIII AAGCTT 1 cut(s) 762
HinfI GANTC 1 cut(s) 662
HpaII CCGG 2 cut(s) 281, 916
HphI GGTGA 3 cut(s) 371, 826, 942
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 864
Hpy188III TCNNGA 4 cut(s) 172, 362, 740, 776
Hpy8I GTNNAC 1 cut(s) 220
HpyCH4III ACNGT 1 cut(s) 520
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 3 cut(s) 546, 652, 788
HpyF10VI GCNNNNNNNGC 2 cut(s) 676, 827
HpyF3I CTNAG 1 cut(s) 435
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 4 cut(s) 628, 652, 670, 743
HspAI GCGC 1 cut(s) 685
KpnI GGTACC 1 cut(s) 83
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 6 cut(s) 126, 205, 334, 580, 772, 874
LmnI GCTCC 1 cut(s) 898
LweI GCATC 4 cut(s) 15, 601, 666, 859
MaeI CTAG 2 cut(s) 188, 693
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 561
MalI GATC 6 cut(s) 128, 207, 336, 582, 774, 876
MboI GATC 6 cut(s) 126, 205, 334, 580, 772, 874
MboII GAAGA 7 cut(s) 143, 561, 740, 791, 796, 877, 902
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 2 cut(s) 739, 903
MluCI AATT 4 cut(s) 257, 304, 418, 938
MlyI GAGTC 1 cut(s) 671
MnlI CCTC 8 cut(s) 26, 79, 221, 321, 381, 442, 444, 810
MseI TTAA 5 cut(s) 48, 576, 672, 702, 905
MslI CAYNNNNRTG 1 cut(s) 541
MspCI CTTAAG 1 cut(s) 671
MspI CCGG 2 cut(s) 281, 916
MspR9I CCNGG 1 cut(s) 917
MwoI GCNNNNNNNGC 2 cut(s) 676, 827
NciI CCSGG 1 cut(s) 917
NdeII GATC 6 cut(s) 126, 205, 334, 580, 772, 874
NlaIII CATG 4 cut(s) 628, 652, 670, 743
NlaIV GGNNCC 3 cut(s) 81, 285, 517
NspV TTCGAA 2 cut(s) 302, 727
OliI CACNNNNGTG 1 cut(s) 541
PagI TCATGA 1 cut(s) 739
PcsI WCGNNNNNNNCGW 1 cut(s) 126
Ple19I CGATCG 1 cut(s) 877
PleI GAGTC 1 cut(s) 670
PpsI GAGTC 1 cut(s) 670
Ppu21I YACGTR 1 cut(s) 239
PsiI TTATAA 1 cut(s) 858
Psp124BI GAGCTC 2 cut(s) 739, 903
PspFI CCCAGC 2 cut(s) 413, 715
PspN4I GGNNCC 3 cut(s) 81, 285, 517
PsuI RGATCY 1 cut(s) 580
PvuI CGATCG 1 cut(s) 877
RsaI GTAC 4 cut(s) 81, 119, 872, 947
RsaNI GTAC 4 cut(s) 80, 118, 871, 946
RseI CAYNNNNRTG 1 cut(s) 541
SacI GAGCTC 2 cut(s) 739, 903
SaqAI TTAA 5 cut(s) 48, 576, 672, 702, 905
Sau3AI GATC 6 cut(s) 126, 205, 334, 580, 772, 874
SchI GAGTC 1 cut(s) 671
ScrFI CCNGG 1 cut(s) 917
SduI GDGCHC 2 cut(s) 739, 903
SfaNI GCATC 4 cut(s) 15, 601, 666, 859
SfuI TTCGAA 2 cut(s) 302, 727
SmiMI CAYNNNNRTG 1 cut(s) 541
SmlI CTYRAG 2 cut(s) 671, 680
SmoI CTYRAG 2 cut(s) 671, 680
Sse9I AATT 4 cut(s) 257, 304, 418, 938
SspMI CTAG 2 cut(s) 188, 693
SstI GAGCTC 2 cut(s) 739, 903
StyD4I CCNGG 1 cut(s) 915
StyI CCWWGG 2 cut(s) 382, 692
TaaI ACNGT 1 cut(s) 520
TaiI ACGT 1 cut(s) 241
TaqI TCGA 4 cut(s) 129, 302, 528, 727
TasI AATT 4 cut(s) 257, 304, 418, 938
TatI WGTACW 1 cut(s) 945
Tru1I TTAA 5 cut(s) 48, 576, 672, 702, 905
Tru9I TTAA 5 cut(s) 48, 576, 672, 702, 905
TspDTI ATGAA 6 cut(s) 39, 637, 641, 806, 948, 977
TspGWI ACGGA 3 cut(s) 135, 254, 849
Vha464I CTTAAG 1 cut(s) 671
XapI RAATTY 3 cut(s) 257, 304, 938
XmaJI CCTAGG 1 cut(s) 692
XspI CTAG 2 cut(s) 188, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.