Rroxscaffold_6G00394980

Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0017590
Physical Location & Seq
Forward (+)
15830914 .. 15831918
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00394980.1

Sequence Viewer

Length: 1005 bp
ATGGGCATCAGGGCATGGGATAGTTTTTATGAATATGGAGGGTTTGATAATCATAGCTACACACCAAAACCAACCTCAACCATTTTACCTGACGAGAATATCCCAGAACCAGAACCAAAGTTGTACGGAGAGATCGAAGAAATACAATCTGAGGTTGAGAGAAAGTTCCAAGAGTTTAAGAACTTTGACATACTAGGTTATTACCCTAATGATCATCACTTTGTTTACAGGAGAGGAAAACCGCGTATTGAAAGTGAATGGGAATTTATCCGTCTTAGACTACCACCGGAACCCAAACTTGCTGGTTCGATTTTTGTTAGGGTTTATGACCAGAGGATTGATCTTATGAGTGTTATGATAGTTGGTCGGGAAAGTCCTCCTTATCACCAAGGCTTGTTTTTCTTTGACATATTCTTTCCCAGCAATTATCTCAAACTGCCTCAGCAGGAAACCGAGGATGTTCCCCCACTCTTTTACCATTCTTTTGACCTTGATTTGAACCCGAACTTGCGAAAAAACGGCACCGTTTCGCTCAACAAAACACAAAAGTGCAAGAACACATTGGAGTTACTCTCTTCACTTAAAGATCTGGTTGTGAATGACAAATCCTACATTGATGCCGAAAAGGGCAGGAAATCAAACAGAAAGGTTTTCATGCAAACTTTTGAGTCCATGCTTAAGATGCTCAAGCGCCCACCTAGGCCGTTTAAAGATTTTGTGCTGGGGTATTTTCGAACAAGAGCTCATGATATTCTTCTCAACTATAAAGCTTGTGCTGATCTTGAAGATAATGCAATGAACTCGTTATTCTTCAAGCTGGTGAGGGCATTTGAAGCCAACGGAACTTATTGCCAGCATCATTATAATCGGAAGCAGTACGATCAGGCATTGAAAGAAGAAAAGGAGATCTTAAACCAGAGTCGGGAGAAATATGGATATGAAAATTTTTTGTTCTCTCCACCAAAGATGAACAAAGCAAAGGATTGGCTTTATTTTGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
UQ_con

Protein Analysis

334

Amino Acids

39.69

Weight (kDa)

7.67

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017590)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26991
malus_domestica MD17G1277900.v1.1
prunus_persica Prupe.3G008800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487241
rosa_laevigata RLG00000023020
rosa_multiflora Rmu_ssc0000366.1_g000013
rosa_roxburghii Rroxscaffold_6G00394980
rosa_samantha Rh3AG280500 Rh3BG316400 Rh3CG314500 Rh3DG312000
rosa_wichuraiana Rw3G024840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 864
AccB1I GGYRCC 1 cut(s) 521
AccII CGCG 1 cut(s) 244
AciI CCGC 1 cut(s) 242
AcsI RAATTY 2 cut(s) 263, 943
AfaI GTAC 2 cut(s) 125, 878
AfiI CCNNNNNNNGG 1 cut(s) 922
AflII CTTAAG 1 cut(s) 677
AgsI TTSAA 6 cut(s) 251, 499, 785, 814, 833, 892
AleI CACNNNNGTG 1 cut(s) 547
AluBI AGCT 4 cut(s) 57, 743, 770, 817
AluI AGCT 4 cut(s) 57, 743, 770, 817
Alw21I GWGCWC 1 cut(s) 745
AoxI GGCC 1 cut(s) 701
ApoI RAATTY 2 cut(s) 263, 943
AspA2I CCTAGG 1 cut(s) 698
AspLEI GCGC 1 cut(s) 693
AsuHPI GGTGA 2 cut(s) 377, 832
AsuII TTCGAA 1 cut(s) 733
AvrII CCTAGG 1 cut(s) 698
BanI GGYRCC 1 cut(s) 521
BanII GRGCYC 1 cut(s) 745
Bbv12I GWGCWC 1 cut(s) 745
BbvCI CCTCAGC 1 cut(s) 441
BceAI ACGGC 2 cut(s) 535, 688
BcgI CGANNNNNNTGC 2 cut(s) 783, 817
BclI TGATCA 1 cut(s) 211
BfaI CTAG 2 cut(s) 194, 699
BfoI RGCGCY 1 cut(s) 694
BfrI CTTAAG 1 cut(s) 677
BglII AGATCT 2 cut(s) 586, 906
BlnI CCTAGG 1 cut(s) 698
BmiI GGNNCC 2 cut(s) 291, 523
BmsI GCATC 4 cut(s) 15, 607, 672, 865
BplI GAGNNNNNCTC 2 cut(s) 557, 589
Bpu10I CCTNAGC 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 733
BpuEI CTTGAG 1 cut(s) 671
BsaJI CCNNGG 3 cut(s) 388, 453, 698
BsaWI WCCGGW 1 cut(s) 286
Bsc4I CCNNNNNNNGG 1 cut(s) 922
Bse3DI GCAATG 1 cut(s) 801
BseDI CCNNGG 3 cut(s) 388, 453, 698
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 1 cut(s) 922
BseMI GCAATG 1 cut(s) 801
BseMII CTCAG 2 cut(s) 141, 455
BseYI CCCAGC 2 cut(s) 419, 721
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 1 cut(s) 703
BshNI GGYRCC 1 cut(s) 521
BsiHKAI GWGCWC 1 cut(s) 745
BsiSI CCGG 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 922
BsnI GGCC 1 cut(s) 703
Bsp119I TTCGAA 1 cut(s) 733
Bsp1286I GDGCHC 1 cut(s) 745
Bsp143I GATC 7 cut(s) 132, 211, 340, 586, 778, 880, 906
BspACI CCGC 1 cut(s) 242
BspANI GGCC 1 cut(s) 703
BspCNI CTCAG 2 cut(s) 142, 454
BspFNI CGCG 1 cut(s) 244
BspHI TCATGA 1 cut(s) 745
BspLI GGNNCC 2 cut(s) 291, 523
BspT104I TTCGAA 1 cut(s) 733
BspT107I GGYRCC 1 cut(s) 521
BspTI CTTAAG 1 cut(s) 677
BsrDI GCAATG 1 cut(s) 801
BssECI CCNNGG 3 cut(s) 388, 453, 698
BssMI GATC 7 cut(s) 132, 211, 340, 586, 778, 880, 906
BssT1I CCWWGG 2 cut(s) 388, 698
Bst4CI ACNGT 1 cut(s) 526
Bst6I CTCTTC 1 cut(s) 580
BstAFI CTTAAG 1 cut(s) 677
BstBI TTCGAA 1 cut(s) 733
BstC8I GCNNGC 1 cut(s) 854
BstDEI CTNAG 3 cut(s) 150, 275, 441
BstF5I GGATG 1 cut(s) 463
BstFNI CGCG 1 cut(s) 244
BstH2I RGCGCY 1 cut(s) 694
BstHHI GCGC 1 cut(s) 693
BstKTI GATC 7 cut(s) 135, 214, 343, 589, 781, 883, 909
BstMBI GATC 7 cut(s) 132, 211, 340, 586, 778, 880, 906
BstMWI GCNNNNNNNGC 2 cut(s) 682, 833
BstUI CGCG 1 cut(s) 244
BstX2I RGATCY 2 cut(s) 586, 906
BstYI RGATCY 2 cut(s) 586, 906
BsuRI GGCC 1 cut(s) 703
BtsCI GGATG 1 cut(s) 463
Cac8I GCNNGC 1 cut(s) 854
CciI TCATGA 1 cut(s) 745
CfoI GCGC 1 cut(s) 693
Csp6I GTAC 2 cut(s) 124, 877
CviAII CATG 4 cut(s) 15, 655, 673, 746
CviJI RGCY 8 cut(s) 57, 393, 703, 743, 770, 817, 836, 988
CviKI_1 RGCY 8 cut(s) 57, 393, 703, 743, 770, 817, 836, 988
CviQI GTAC 2 cut(s) 124, 877
DdeI CTNAG 3 cut(s) 150, 275, 441
DpnI GATC 7 cut(s) 134, 213, 342, 588, 780, 882, 908
DpnII GATC 7 cut(s) 132, 211, 340, 586, 778, 880, 906
DraI TTTAAA 1 cut(s) 709
Eam1104I CTCTTC 1 cut(s) 580
EarI CTCTTC 1 cut(s) 580
Ecl136II GAGCTC 1 cut(s) 743
Eco130I CCWWGG 2 cut(s) 388, 698
Eco24I GRGCYC 1 cut(s) 745
Eco53kI GAGCTC 1 cut(s) 743
EcoICRI GAGCTC 1 cut(s) 743
EcoT14I CCWWGG 2 cut(s) 388, 698
EcoT38I GRGCYC 1 cut(s) 745
ErhI CCWWGG 2 cut(s) 388, 698
FaeI CATG 4 cut(s) 18, 658, 676, 749
FalI AAGNNNNNCTT 4 cut(s) 364, 396, 893, 925
FatI CATG 4 cut(s) 14, 654, 672, 745
FbaI TGATCA 1 cut(s) 211
FokI GGATG 1 cut(s) 470
FriOI GRGCYC 1 cut(s) 745
FspBI CTAG 2 cut(s) 194, 699
GlaI GCGC 1 cut(s) 692
GsaI CCCAGC 2 cut(s) 423, 725
HaeII RGCGCY 1 cut(s) 694
HaeIII GGCC 1 cut(s) 703
HapII CCGG 1 cut(s) 287
HhaI GCGC 1 cut(s) 693
Hin1II CATG 4 cut(s) 18, 658, 676, 749
Hin6I GCGC 1 cut(s) 691
HinP1I GCGC 1 cut(s) 691
HindIII AAGCTT 1 cut(s) 768
HinfI GANTC 2 cut(s) 668, 919
HpaII CCGG 1 cut(s) 287
HphI GGTGA 2 cut(s) 377, 832
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 151, 870
Hpy188III TCNNGA 4 cut(s) 368, 746, 782, 923
Hpy8I GTNNAC 1 cut(s) 226
HpyCH4III ACNGT 1 cut(s) 526
HpyCH4V TGCA 3 cut(s) 552, 658, 794
HpyF10VI GCNNNNNNNGC 2 cut(s) 682, 833
HpyF3I CTNAG 3 cut(s) 150, 275, 441
Hsp92II CATG 4 cut(s) 18, 658, 676, 749
HspAI GCGC 1 cut(s) 691
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 7 cut(s) 132, 211, 340, 586, 778, 880, 906
LweI GCATC 4 cut(s) 15, 607, 672, 865
MaeI CTAG 2 cut(s) 194, 699
MaeIII GTNAC 1 cut(s) 567
MalI GATC 7 cut(s) 134, 213, 342, 588, 780, 882, 908
MboI GATC 7 cut(s) 132, 211, 340, 586, 778, 880, 906
MboII GAAGA 6 cut(s) 149, 567, 746, 797, 802, 908
MflI RGATCY 2 cut(s) 586, 906
MhlI GDGCHC 1 cut(s) 745
MluCI AATT 3 cut(s) 263, 424, 943
MlyI GAGTC 2 cut(s) 677, 928
MnlI CCTC 9 cut(s) 32, 85, 145, 227, 327, 387, 448, 450, 816
MseI TTAA 5 cut(s) 177, 582, 678, 708, 911
MslI CAYNNNNRTG 1 cut(s) 547
MspCI CTTAAG 1 cut(s) 677
MspI CCGG 1 cut(s) 287
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 682, 833
NdeII GATC 7 cut(s) 132, 211, 340, 586, 778, 880, 906
NlaIII CATG 4 cut(s) 18, 658, 676, 749
NlaIV GGNNCC 2 cut(s) 291, 523
NspV TTCGAA 1 cut(s) 733
OliI CACNNNNGTG 1 cut(s) 547
PagI TCATGA 1 cut(s) 745
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PleI GAGTC 2 cut(s) 676, 927
PpsI GAGTC 2 cut(s) 676, 927
PsiI TTATAA 1 cut(s) 864
Psp124BI GAGCTC 1 cut(s) 745
PspFI CCCAGC 2 cut(s) 419, 721
PspN4I GGNNCC 2 cut(s) 291, 523
PsuI RGATCY 2 cut(s) 586, 906
RsaI GTAC 2 cut(s) 125, 878
RsaNI GTAC 2 cut(s) 124, 877
RseI CAYNNNNRTG 1 cut(s) 547
SacI GAGCTC 1 cut(s) 745
SaqAI TTAA 5 cut(s) 177, 582, 678, 708, 911
Sau3AI GATC 7 cut(s) 132, 211, 340, 586, 778, 880, 906
SchI GAGTC 2 cut(s) 677, 928
SduI GDGCHC 1 cut(s) 745
SfaNI GCATC 4 cut(s) 15, 607, 672, 865
SfuI TTCGAA 1 cut(s) 733
SmiMI CAYNNNNRTG 1 cut(s) 547
SmlI CTYRAG 2 cut(s) 677, 686
SmoI CTYRAG 2 cut(s) 677, 686
Sse9I AATT 3 cut(s) 263, 424, 943
SsiI CCGC 1 cut(s) 242
SspMI CTAG 2 cut(s) 194, 699
SstI GAGCTC 1 cut(s) 745
StyI CCWWGG 2 cut(s) 388, 698
TaaI ACNGT 1 cut(s) 526
TaqI TCGA 3 cut(s) 135, 308, 733
TasI AATT 3 cut(s) 263, 424, 943
Tru1I TTAA 5 cut(s) 177, 582, 678, 708, 911
Tru9I TTAA 5 cut(s) 177, 582, 678, 708, 911
TspDTI ATGAA 5 cut(s) 45, 643, 812, 954, 983
TspGWI ACGGA 3 cut(s) 141, 260, 855
Vha464I CTTAAG 1 cut(s) 677
XapI RAATTY 2 cut(s) 263, 943
XmaJI CCTAGG 1 cut(s) 698
XspI CTAG 2 cut(s) 194, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.