Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0017590

Physical Location & Seq

Genomic Coordinates Reverse (-)

32396631 .. 32397635

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG316400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGCATCAGGGCATGGGATAGTTTTTATGAATATGGAGGGTTTGATAATCATAGCTACACACCAAAACCAACCTCAACGATGGTACCTGACGAGAATATCCCAGAACCAGAACCAAAGTTGTACGGAGAGATTGAAGAAATACAATCTGAGGTTGAGAGAAAGTTCCAAGAGTTCAAGAACTTTGACATACTAGGTTATTACCCTAATGATCATCACTTTGTTTACAGGAGAGGAAAACCACGTATTGAAAGTGAATGGGAATTTATCCGTGTTAGACTACCACCGGAACCCAAACTTGCTGGTTCGATTTTTGTTAGGGTTTATGACCAGAGGATTGATCTTATGAGTGTTATGATAGTTGGTCGGGAAAGTCCTCCTTATCACCAAGGCTTGTTTTTCTTTGACATATTCTTTCCCAGCAATTATCTCAAACTGCCTCAGCAGGAAACCGAGGATGTTCCCCCACTCTTTTACCATTCTTTTGACTTTGATTTGAACCCGAACTTGCGAAAAAACGGCACCGTTTCGCTCGACAAAACACAAAAGTGCAAGAACACATTGGAGTTACTCTCTTCACTTAAAGATCTGGTTGTGAATGACAAATCCTACATTGATGCCGAAAAGGGCATGAAATCAAACAGAAAGGTTTTCATGCAAACTTTTGAGTCCATGCTTAAGATGCTCAAGCGCCCACCTAGGCCGTTTAAAGATTTTGTGCTGGGGTATTTTCGAACAAGAGCTCATGATATTCTTCTCAACTATAAAGCTTGTGCTGATCTTGAAGATAATGCAATGAACTCGTTATTCTTCAAGCTGGTGAGGGCATTTGAAGCCAACGGAACTTATTGCCAGCATCATTATAATCAGAAGCAGTACGATCGGGCATTGAAAGAAGAAAAGGAGCTCTTAAACCAGAGTCGGGAGAAATATGGATATGAAAATTTTTTGTACTCACCACCAAAGACGAACAAAGCAAAGGATTGGCTTTATTTTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

334

Amino Acids

39.67

Weight (kDa)

6.73

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017590)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26991
malus_domestica	MD17G1277900.v1.1
prunus_persica	Prupe.3G008800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0487241
rosa_laevigata	RLG00000023020
rosa_multiflora	Rmu_ssc0000366.1_g000013
rosa_roxburghii	Rroxscaffold_6G00394980
rosa_samantha	Rh3AG280500 Rh3BG316400 Rh3CG314500 Rh3DG312000
rosa_wichuraiana	Rw3G024840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	864
Acc65I	GGTACC	1 cut(s)	85
AccB1I	GGYRCC	2 cut(s)	85, 521
AcsI	RAATTY	2 cut(s)	263, 943
AfaI	GTAC	4 cut(s)	87, 125, 878, 953
AfiI	CCNNNNNNNGG	1 cut(s)	922
AflII	CTTAAG	1 cut(s)	677
AgsI	TTSAA	8 cut(s)	137, 178, 251, 499, 785, 814, 833, 892
AleI	CACNNNNGTG	1 cut(s)	547
AluBI	AGCT	5 cut(s)	57, 743, 770, 817, 907
AluI	AGCT	5 cut(s)	57, 743, 770, 817, 907
Alw21I	GWGCWC	2 cut(s)	745, 909
AoxI	GGCC	1 cut(s)	701
ApoI	RAATTY	2 cut(s)	263, 943
Asp718I	GGTACC	1 cut(s)	85
AspA2I	CCTAGG	1 cut(s)	698
AspLEI	GCGC	1 cut(s)	693
AsuHPI	GGTGA	3 cut(s)	377, 832, 948
AsuII	TTCGAA	1 cut(s)	733
AvrII	CCTAGG	1 cut(s)	698
BaeI	ACNNNNGTAYC	2 cut(s)	69, 102
BanI	GGYRCC	2 cut(s)	85, 521
BanII	GRGCYC	2 cut(s)	745, 909
Bbv12I	GWGCWC	2 cut(s)	745, 909
BbvCI	CCTCAGC	1 cut(s)	441
BccI	CCATC	1 cut(s)	76
BceAI	ACGGC	2 cut(s)	535, 688
BcgI	CGANNNNNNTGC	4 cut(s)	783, 817, 863, 897
BclI	TGATCA	1 cut(s)	211
BfaI	CTAG	2 cut(s)	194, 699
BfoI	RGCGCY	1 cut(s)	694
BfrI	CTTAAG	1 cut(s)	677
BglII	AGATCT	1 cut(s)	586
BlnI	CCTAGG	1 cut(s)	698
BmiI	GGNNCC	3 cut(s)	87, 291, 523
BmsI	GCATC	4 cut(s)	15, 607, 672, 865
BplI	GAGNNNNNCTC	2 cut(s)	557, 589
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu14I	TTCGAA	1 cut(s)	733
BpuEI	CTTGAG	1 cut(s)	671
BsaAI	YACGTR	1 cut(s)	245
BsaJI	CCNNGG	3 cut(s)	388, 453, 698
BsaWI	WCCGGW	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	922
Bse3DI	GCAATG	1 cut(s)	801
BseDI	CCNNGG	3 cut(s)	388, 453, 698
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	1 cut(s)	922
BseMI	GCAATG	1 cut(s)	801
BseMII	CTCAG	2 cut(s)	141, 455
BseYI	CCCAGC	2 cut(s)	419, 721
Bsh1285I	CGRYCG	1 cut(s)	883
BshFI	GGCC	1 cut(s)	703
BshNI	GGYRCC	2 cut(s)	85, 521
BsiEI	CGRYCG	1 cut(s)	883
BsiHKAI	GWGCWC	2 cut(s)	745, 909
BsiSI	CCGG	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	922
BsnI	GGCC	1 cut(s)	703
Bsp119I	TTCGAA	1 cut(s)	733
Bsp1286I	GDGCHC	2 cut(s)	745, 909
Bsp143I	GATC	5 cut(s)	211, 340, 586, 778, 880
BspANI	GGCC	1 cut(s)	703
BspCNI	CTCAG	2 cut(s)	142, 454
BspHI	TCATGA	1 cut(s)	745
BspLI	GGNNCC	3 cut(s)	87, 291, 523
BspT104I	TTCGAA	1 cut(s)	733
BspT107I	GGYRCC	2 cut(s)	85, 521
BspTI	CTTAAG	1 cut(s)	677
BsrDI	GCAATG	1 cut(s)	801
BssECI	CCNNGG	3 cut(s)	388, 453, 698
BssMI	GATC	5 cut(s)	211, 340, 586, 778, 880
BssT1I	CCWWGG	2 cut(s)	388, 698
Bst4CI	ACNGT	1 cut(s)	526
Bst6I	CTCTTC	1 cut(s)	580
BstAFI	CTTAAG	1 cut(s)	677
BstBAI	YACGTR	1 cut(s)	245
BstBI	TTCGAA	1 cut(s)	733
BstC8I	GCNNGC	1 cut(s)	854
BstDEI	CTNAG	2 cut(s)	150, 441
BstF5I	GGATG	1 cut(s)	463
BstH2I	RGCGCY	1 cut(s)	694
BstHHI	GCGC	1 cut(s)	693
BstKTI	GATC	5 cut(s)	214, 343, 589, 781, 883
BstMBI	GATC	5 cut(s)	211, 340, 586, 778, 880
BstMCI	CGRYCG	1 cut(s)	883
BstMWI	GCNNNNNNNGC	2 cut(s)	682, 833
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BsuRI	GGCC	1 cut(s)	703
BtsCI	GGATG	1 cut(s)	463
Cac8I	GCNNGC	1 cut(s)	854
CciI	TCATGA	1 cut(s)	745
CfoI	GCGC	1 cut(s)	693
Csp6I	GTAC	4 cut(s)	86, 124, 877, 952
CviAII	CATG	5 cut(s)	15, 631, 655, 673, 746
CviJI	RGCY	9 cut(s)	57, 393, 703, 743, 770, 817, 836, 907, 988
CviKI_1	RGCY	9 cut(s)	57, 393, 703, 743, 770, 817, 836, 907, 988
CviQI	GTAC	4 cut(s)	86, 124, 877, 952
DdeI	CTNAG	2 cut(s)	150, 441
DpnI	GATC	5 cut(s)	213, 342, 588, 780, 882
DpnII	GATC	5 cut(s)	211, 340, 586, 778, 880
DraI	TTTAAA	1 cut(s)	709
Eam1104I	CTCTTC	1 cut(s)	580
EarI	CTCTTC	1 cut(s)	580
Ecl136II	GAGCTC	2 cut(s)	743, 907
Eco130I	CCWWGG	2 cut(s)	388, 698
Eco24I	GRGCYC	2 cut(s)	745, 909
Eco53kI	GAGCTC	2 cut(s)	743, 907
EcoICRI	GAGCTC	2 cut(s)	743, 907
EcoT14I	CCWWGG	2 cut(s)	388, 698
EcoT38I	GRGCYC	2 cut(s)	745, 909
ErhI	CCWWGG	2 cut(s)	388, 698
FaeI	CATG	5 cut(s)	18, 634, 658, 676, 749
FalI	AAGNNNNNCTT	4 cut(s)	364, 396, 893, 925
FatI	CATG	5 cut(s)	14, 630, 654, 672, 745
FbaI	TGATCA	1 cut(s)	211
FokI	GGATG	1 cut(s)	470
FriOI	GRGCYC	2 cut(s)	745, 909
FspBI	CTAG	2 cut(s)	194, 699
GlaI	GCGC	1 cut(s)	692
GsaI	CCCAGC	2 cut(s)	423, 725
HaeII	RGCGCY	1 cut(s)	694
HaeIII	GGCC	1 cut(s)	703
HapII	CCGG	1 cut(s)	287
HhaI	GCGC	1 cut(s)	693
Hin1II	CATG	5 cut(s)	18, 634, 658, 676, 749
Hin6I	GCGC	1 cut(s)	691
HinP1I	GCGC	1 cut(s)	691
HindIII	AAGCTT	1 cut(s)	768
HinfI	GANTC	2 cut(s)	668, 919
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	3 cut(s)	377, 832, 948
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	151, 870
Hpy188III	TCNNGA	5 cut(s)	178, 368, 746, 782, 923
Hpy8I	GTNNAC	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	3 cut(s)	552, 658, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	682, 833
HpyF3I	CTNAG	2 cut(s)	150, 441
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	5 cut(s)	18, 634, 658, 676, 749
HspAI	GCGC	1 cut(s)	691
KpnI	GGTACC	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	5 cut(s)	211, 340, 586, 778, 880
LmnI	GCTCC	1 cut(s)	904
LweI	GCATC	4 cut(s)	15, 607, 672, 865
MaeI	CTAG	2 cut(s)	194, 699
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	567
MalI	GATC	5 cut(s)	213, 342, 588, 780, 882
MboI	GATC	5 cut(s)	211, 340, 586, 778, 880
MboII	GAAGA	6 cut(s)	149, 567, 746, 797, 802, 908
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	2 cut(s)	745, 909
MluCI	AATT	3 cut(s)	263, 424, 943
MlyI	GAGTC	2 cut(s)	677, 928
MnlI	CCTC	9 cut(s)	32, 85, 145, 227, 327, 387, 448, 450, 816
MseI	TTAA	4 cut(s)	582, 678, 708, 911
MslI	CAYNNNNRTG	1 cut(s)	547
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	2 cut(s)	682, 833
NdeII	GATC	5 cut(s)	211, 340, 586, 778, 880
NlaIII	CATG	5 cut(s)	18, 634, 658, 676, 749
NlaIV	GGNNCC	3 cut(s)	87, 291, 523
NspV	TTCGAA	1 cut(s)	733
OliI	CACNNNNGTG	1 cut(s)	547
PagI	TCATGA	1 cut(s)	745
Ple19I	CGATCG	1 cut(s)	883
PleI	GAGTC	2 cut(s)	676, 927
PpsI	GAGTC	2 cut(s)	676, 927
Ppu21I	YACGTR	1 cut(s)	245
PsiI	TTATAA	1 cut(s)	864
Psp124BI	GAGCTC	2 cut(s)	745, 909
PspFI	CCCAGC	2 cut(s)	419, 721
PspN4I	GGNNCC	3 cut(s)	87, 291, 523
PsuI	RGATCY	1 cut(s)	586
PvuI	CGATCG	1 cut(s)	883
RsaI	GTAC	4 cut(s)	87, 125, 878, 953
RsaNI	GTAC	4 cut(s)	86, 124, 877, 952
RseI	CAYNNNNRTG	1 cut(s)	547
SacI	GAGCTC	2 cut(s)	745, 909
SaqAI	TTAA	4 cut(s)	582, 678, 708, 911
Sau3AI	GATC	5 cut(s)	211, 340, 586, 778, 880
SchI	GAGTC	2 cut(s)	677, 928
SduI	GDGCHC	2 cut(s)	745, 909
SfaNI	GCATC	4 cut(s)	15, 607, 672, 865
SfuI	TTCGAA	1 cut(s)	733
SmiMI	CAYNNNNRTG	1 cut(s)	547
SmlI	CTYRAG	2 cut(s)	677, 686
SmoI	CTYRAG	2 cut(s)	677, 686
Sse9I	AATT	3 cut(s)	263, 424, 943
SspMI	CTAG	2 cut(s)	194, 699
SstI	GAGCTC	2 cut(s)	745, 909
StyI	CCWWGG	2 cut(s)	388, 698
TaaI	ACNGT	1 cut(s)	526
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	3 cut(s)	308, 534, 733
TasI	AATT	3 cut(s)	263, 424, 943
TatI	WGTACW	1 cut(s)	951
Tru1I	TTAA	4 cut(s)	582, 678, 708, 911
Tru9I	TTAA	4 cut(s)	582, 678, 708, 911
TspDTI	ATGAA	5 cut(s)	45, 643, 647, 812, 954
TspGWI	ACGGA	3 cut(s)	141, 260, 855
Vha464I	CTTAAG	1 cut(s)	677
XapI	RAATTY	2 cut(s)	263, 943
XmaJI	CCTAGG	1 cut(s)	698
XspI	CTAG	2 cut(s)	194, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.