Rh3CG314500

Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0017590
Physical Location & Seq
Reverse (-)
33461817 .. 33462740
924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG314500.1

Sequence Viewer

Length: 753 bp
ATGGTACCTGACGAGAATATCCCCGAACCAGAACCAAAGTTGTACGGAGAGATCGAAGAAATACAATCTGTGGTTGAGAGAAAGTTCCAAGAGTTCAAGAACTTTGACATACTAGGTTATTACCCTAATGATCATCACTTTGTTTACAGGAGAGGAAAACCACGTATTGAAAGTGAATGGGAATTTATCCGTCAGGAAACCGAGGATGTTCCCCCACTCTTTTACCATTCTTTTGACTTTGATTTGAACCCGAACTTGCGTAAAAACGGCACCGTTTCGCTCGACAAGACACAAAAGTGCAAGAACACATTGGAGTTACTCTCTTCACTTAAAGATCTGGTTGTGAATGACAAATCCTACATTGATGCCGAAAAGGGCATGAAATCAAACAGAGAGGTTTTCATGCAAACTTTTGAGTCCATGCTTAAGATGCTCAAGCGCCCACCGAGGCCGTTTAAAGATTTTGTGCTGGGGTATTTTCGAACAAGAGCTCATGATATTCTTCTCAACTATAAAGCTTGTGCTGATCTTGAAGATAATGCAATGAACTCGTTATTCTTCAAGCTGGTGAGGGCATTTGAAGCTAACGGAACTTATTGCCAGCATCATTATAATCAGAAGAAGTACGATCGGGCATTGAAAGAAGAAAAGGAGCTCTTAAACCAGAGCCGGGAGAAATATGGATATGAAAATTTTTTGTACTCACCACCAAAGATGAACAAAGCAAAGGATTGGCTTTATTTTGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
UQ_con

Protein Analysis

250

Amino Acids

29.91

Weight (kDa)

6.62

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017590)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26991
malus_domestica MD17G1277900.v1.1
prunus_persica Prupe.3G008800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487241
rosa_laevigata RLG00000023020
rosa_multiflora Rmu_ssc0000366.1_g000013
rosa_roxburghii Rroxscaffold_6G00394980
rosa_samantha Rh3AG280500 Rh3BG316400 Rh3CG314500 Rh3DG312000
rosa_wichuraiana Rw3G024840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 612
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 2 cut(s) 4, 269
AcsI RAATTY 2 cut(s) 182, 691
AfaI GTAC 4 cut(s) 6, 44, 626, 701
AfiI CCNNNNNNNGG 1 cut(s) 670
AflII CTTAAG 1 cut(s) 425
AgsI TTSAA 7 cut(s) 97, 170, 247, 533, 562, 581, 640
AleI CACNNNNGTG 1 cut(s) 295
AluBI AGCT 5 cut(s) 491, 518, 565, 584, 655
AluI AGCT 5 cut(s) 491, 518, 565, 584, 655
Alw21I GWGCWC 2 cut(s) 493, 657
AoxI GGCC 1 cut(s) 449
ApoI RAATTY 2 cut(s) 182, 691
Asp718I GGTACC 1 cut(s) 4
AspLEI GCGC 1 cut(s) 441
AsuC2I CCSGG 1 cut(s) 671
AsuHPI GGTGA 2 cut(s) 580, 696
AsuII TTCGAA 1 cut(s) 481
BanI GGYRCC 2 cut(s) 4, 269
BanII GRGCYC 2 cut(s) 493, 657
Bbv12I GWGCWC 2 cut(s) 493, 657
BceAI ACGGC 2 cut(s) 283, 436
BcgI CGANNNNNNTGC 2 cut(s) 531, 565
BclI TGATCA 1 cut(s) 130
BcnI CCSGG 1 cut(s) 671
BfaI CTAG 1 cut(s) 113
BfoI RGCGCY 1 cut(s) 442
BfrI CTTAAG 1 cut(s) 425
BglII AGATCT 1 cut(s) 334
Bme1390I CCNGG 1 cut(s) 671
BmiI GGNNCC 2 cut(s) 6, 271
BmrFI CCNGG 1 cut(s) 671
BmsI GCATC 3 cut(s) 355, 420, 613
BplI GAGNNNNNCTC 2 cut(s) 305, 337
Bpu14I TTCGAA 1 cut(s) 481
BpuEI CTTGAG 1 cut(s) 419
BpuMI CCSGG 1 cut(s) 671
BsaAI YACGTR 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 201, 446
Bsc4I CCNNNNNNNGG 1 cut(s) 670
Bse3DI GCAATG 1 cut(s) 549
BseDI CCNNGG 2 cut(s) 201, 446
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 670
BseMI GCAATG 1 cut(s) 549
BseYI CCCAGC 1 cut(s) 469
Bsh1285I CGRYCG 1 cut(s) 631
BshFI GGCC 1 cut(s) 451
BshNI GGYRCC 2 cut(s) 4, 269
BsiEI CGRYCG 1 cut(s) 631
BsiHKAI GWGCWC 2 cut(s) 493, 657
BsiSI CCGG 1 cut(s) 670
BslI CCNNNNNNNGG 1 cut(s) 670
BsnI GGCC 1 cut(s) 451
Bsp119I TTCGAA 1 cut(s) 481
Bsp1286I GDGCHC 2 cut(s) 493, 657
Bsp143I GATC 5 cut(s) 51, 130, 334, 526, 628
BspANI GGCC 1 cut(s) 451
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 2 cut(s) 6, 271
BspT104I TTCGAA 1 cut(s) 481
BspT107I GGYRCC 2 cut(s) 4, 269
BspTI CTTAAG 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 549
BssECI CCNNGG 2 cut(s) 201, 446
BssMI GATC 5 cut(s) 51, 130, 334, 526, 628
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 328
BstAFI CTTAAG 1 cut(s) 425
BstBAI YACGTR 1 cut(s) 164
BstBI TTCGAA 1 cut(s) 481
BstC8I GCNNGC 1 cut(s) 602
BstF5I GGATG 1 cut(s) 211
BstH2I RGCGCY 1 cut(s) 442
BstHHI GCGC 1 cut(s) 441
BstKTI GATC 5 cut(s) 54, 133, 337, 529, 631
BstMBI GATC 5 cut(s) 51, 130, 334, 526, 628
BstMCI CGRYCG 1 cut(s) 631
BstMWI GCNNNNNNNGC 2 cut(s) 430, 581
BstSCI CCNGG 1 cut(s) 669
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuRI GGCC 1 cut(s) 451
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 602
CciI TCATGA 1 cut(s) 493
CfoI GCGC 1 cut(s) 441
Csp6I GTAC 4 cut(s) 5, 43, 625, 700
CviAII CATG 4 cut(s) 379, 403, 421, 494
CviJI RGCY 8 cut(s) 451, 491, 518, 565, 584, 655, 669, 736
CviKI_1 RGCY 8 cut(s) 451, 491, 518, 565, 584, 655, 669, 736
CviQI GTAC 4 cut(s) 5, 43, 625, 700
DpnI GATC 5 cut(s) 53, 132, 336, 528, 630
DpnII GATC 5 cut(s) 51, 130, 334, 526, 628
DraI TTTAAA 1 cut(s) 457
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Ecl136II GAGCTC 2 cut(s) 491, 655
Eco24I GRGCYC 2 cut(s) 493, 657
Eco53kI GAGCTC 2 cut(s) 491, 655
EcoICRI GAGCTC 2 cut(s) 491, 655
EcoT38I GRGCYC 2 cut(s) 493, 657
FaeI CATG 4 cut(s) 382, 406, 424, 497
FaiI YATR 9 cut(s) 110, 380, 404, 422, 495, 513, 612, 681, 687
FalI AAGNNNNNCTT 2 cut(s) 641, 673
FatI CATG 4 cut(s) 378, 402, 420, 493
FbaI TGATCA 1 cut(s) 130
FokI GGATG 1 cut(s) 218
FriOI GRGCYC 2 cut(s) 493, 657
FspBI CTAG 1 cut(s) 113
GlaI GCGC 1 cut(s) 440
GsaI CCCAGC 1 cut(s) 473
HaeII RGCGCY 1 cut(s) 442
HaeIII GGCC 1 cut(s) 451
HapII CCGG 1 cut(s) 670
HhaI GCGC 1 cut(s) 441
Hin1II CATG 4 cut(s) 382, 406, 424, 497
Hin6I GCGC 1 cut(s) 439
HinP1I GCGC 1 cut(s) 439
HindIII AAGCTT 1 cut(s) 516
HinfI GANTC 1 cut(s) 416
HpaII CCGG 1 cut(s) 670
HphI GGTGA 2 cut(s) 580, 696
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 1 cut(s) 618
Hpy188III TCNNGA 4 cut(s) 97, 194, 494, 530
Hpy8I GTNNAC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 3 cut(s) 300, 406, 542
HpyF10VI GCNNNNNNNGC 2 cut(s) 430, 581
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 4 cut(s) 382, 406, 424, 497
HspAI GCGC 1 cut(s) 439
KpnI GGTACC 1 cut(s) 8
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 5 cut(s) 51, 130, 334, 526, 628
LmnI GCTCC 1 cut(s) 652
LweI GCATC 3 cut(s) 355, 420, 613
MaeI CTAG 1 cut(s) 113
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 315
MalI GATC 5 cut(s) 53, 132, 336, 528, 630
MboI GATC 5 cut(s) 51, 130, 334, 526, 628
MboII GAAGA 7 cut(s) 68, 315, 494, 545, 550, 631, 656
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 2 cut(s) 493, 657
MluCI AATT 2 cut(s) 182, 691
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 5 cut(s) 146, 196, 388, 441, 564
MseI TTAA 4 cut(s) 330, 426, 456, 659
MslI CAYNNNNRTG 1 cut(s) 295
MspCI CTTAAG 1 cut(s) 425
MspI CCGG 1 cut(s) 670
MspR9I CCNGG 1 cut(s) 671
MwoI GCNNNNNNNGC 2 cut(s) 430, 581
NciI CCSGG 1 cut(s) 671
NdeII GATC 5 cut(s) 51, 130, 334, 526, 628
NlaIII CATG 4 cut(s) 382, 406, 424, 497
NlaIV GGNNCC 2 cut(s) 6, 271
NspV TTCGAA 1 cut(s) 481
OliI CACNNNNGTG 1 cut(s) 295
PagI TCATGA 1 cut(s) 493
PcsI WCGNNNNNNNCGW 1 cut(s) 51
Ple19I CGATCG 1 cut(s) 631
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Ppu21I YACGTR 1 cut(s) 164
PsiI TTATAA 1 cut(s) 612
Psp124BI GAGCTC 2 cut(s) 493, 657
PspFI CCCAGC 1 cut(s) 469
PspN4I GGNNCC 2 cut(s) 6, 271
PsuI RGATCY 1 cut(s) 334
PvuI CGATCG 1 cut(s) 631
RsaI GTAC 4 cut(s) 6, 44, 626, 701
RsaNI GTAC 4 cut(s) 5, 43, 625, 700
RseI CAYNNNNRTG 1 cut(s) 295
SacI GAGCTC 2 cut(s) 493, 657
SaqAI TTAA 4 cut(s) 330, 426, 456, 659
Sau3AI GATC 5 cut(s) 51, 130, 334, 526, 628
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 671
SduI GDGCHC 2 cut(s) 493, 657
SetI ASST 9 cut(s) 10, 118, 166, 399, 493, 520, 567, 586, 657
SfaNI GCATC 3 cut(s) 355, 420, 613
SfuI TTCGAA 1 cut(s) 481
SmiMI CAYNNNNRTG 1 cut(s) 295
SmlI CTYRAG 2 cut(s) 425, 434
SmoI CTYRAG 2 cut(s) 425, 434
Sse9I AATT 2 cut(s) 182, 691
SspMI CTAG 1 cut(s) 113
SstI GAGCTC 2 cut(s) 493, 657
StyD4I CCNGG 1 cut(s) 669
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 166
TaqI TCGA 3 cut(s) 54, 282, 481
TasI AATT 2 cut(s) 182, 691
TatI WGTACW 1 cut(s) 699
Tru1I TTAA 4 cut(s) 330, 426, 456, 659
Tru9I TTAA 4 cut(s) 330, 426, 456, 659
TspDTI ATGAA 5 cut(s) 391, 395, 560, 702, 731
TspGWI ACGGA 3 cut(s) 60, 179, 603
Vha464I CTTAAG 1 cut(s) 425
XapI RAATTY 2 cut(s) 182, 691
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.