Rh3AG280500

Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0017590
Physical Location & Seq
Reverse (-)
32702505 .. 32703589
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG280500.1

Sequence Viewer

Length: 996 bp
ATGGGCATCAGGGATAGTTTTTATGAATATGGAGGGTTTGGTAATCTTAACTACACACCAAAACCAACCTCAACGATGGTACCTGACGAGAATATCCCAGAACCAGAACCAAAGTTGTCCGGAGAGATCGAAGAAATACAATCTGAGGTTGAGAGAAAGTTCCAAGAGTTCAAGAACTTTGACATACTAGGTTATTACCCTAATGATCATCACTTTGTTTACAGGAGAGGAAAACCACGTATTGAAAGTGAATGGGAATTTATCCGTGTTAGACTACCACCGGAACCCAAACTTTCTGGTTCGATTTTTGTTAGGGTTTATGACCAGAGGATTGATCTTATGAGTGTTATGATAGTTGGTCGGGAAAGTCCTTATCACCAAGGCTTGTTTTTCTTTGACATATTCTTTCCCAGCAATTATCTCAAACTGCCTCAGCAGGAAACCGAGGATGTTCCCCCACTCTTTTACCATTCTTTTGACTTTGATTTGAACCCGAACTTGCGTAAAAACGGCACCGTTTCGCTCGACAAAACACTAAAGTGCAAGCACACATTGGAGTTACTCTCTTCACTTAAAGATCTGGTTGTGAATGACAAGTCCTACATTGATGCCGAAAAGGGCATGAAATCAAACAGAGAGGTTTTCATGCAAACTTTTGAGTCCATGCTTAAGATGCTCAAGCGCCCACCTAGGCCGTTTAAAGATTTTGTGCTGGGGTATTTTCGAACAAGAGCTCATGATATTCTTCTCAACTATAAAGCTTGTGCTGATCTTGAAGATAATGCAATGAACTCGTTATTCTTCAAGCTGGTGAGGGCATTTGAAGCTAACGGAACTTATTGCCAGCATCATTATAATCAGAAGAAGTACGATCGGGCATTGAAAGAAGAAAAGGAGCTCTTAAACCAGAGCCGGGAGAAGTATGGATATGAAAATTTTTTGTACTCACCACCAAAGATGAACAAAGCGAAGGATTGGCTTTATTTTGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
UQ_con

Protein Analysis

331

Amino Acids

39.24

Weight (kDa)

6.73

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017590)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26991
malus_domestica MD17G1277900.v1.1
prunus_persica Prupe.3G008800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487241
rosa_laevigata RLG00000023020
rosa_multiflora Rmu_ssc0000366.1_g000013
rosa_roxburghii Rroxscaffold_6G00394980
rosa_samantha Rh3AG280500 Rh3BG316400 Rh3CG314500 Rh3DG312000
rosa_wichuraiana Rw3G024840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 855
Acc65I GGTACC 1 cut(s) 79
AccB1I GGYRCC 2 cut(s) 79, 512
AccIII TCCGGA 1 cut(s) 119
AcsI RAATTY 2 cut(s) 257, 934
AfaI GTAC 3 cut(s) 81, 869, 944
AfiI CCNNNNNNNGG 1 cut(s) 913
AflII CTTAAG 1 cut(s) 668
AgsI TTSAA 7 cut(s) 172, 245, 490, 776, 805, 824, 883
AleI CACNNNNGTG 1 cut(s) 538
AluBI AGCT 5 cut(s) 734, 761, 808, 827, 898
AluI AGCT 5 cut(s) 734, 761, 808, 827, 898
Alw21I GWGCWC 2 cut(s) 736, 900
Aor13HI TCCGGA 1 cut(s) 119
AoxI GGCC 1 cut(s) 692
ApoI RAATTY 2 cut(s) 257, 934
Asp718I GGTACC 1 cut(s) 79
AspA2I CCTAGG 1 cut(s) 689
AspLEI GCGC 1 cut(s) 684
AsuC2I CCSGG 1 cut(s) 914
AsuHPI GGTGA 3 cut(s) 368, 823, 939
AsuII TTCGAA 1 cut(s) 724
AvrII CCTAGG 1 cut(s) 689
BaeI ACNNNNGTAYC 2 cut(s) 63, 96
BanI GGYRCC 2 cut(s) 79, 512
BanII GRGCYC 2 cut(s) 736, 900
Bbv12I GWGCWC 2 cut(s) 736, 900
BbvCI CCTCAGC 1 cut(s) 432
BccI CCATC 1 cut(s) 70
BceAI ACGGC 2 cut(s) 526, 679
BcgI CGANNNNNNTGC 2 cut(s) 774, 808
BclI TGATCA 1 cut(s) 205
BcnI CCSGG 1 cut(s) 914
BfaI CTAG 2 cut(s) 188, 690
BfoI RGCGCY 1 cut(s) 685
BfrI CTTAAG 1 cut(s) 668
BglII AGATCT 1 cut(s) 577
BlnI CCTAGG 1 cut(s) 689
Bme1390I CCNGG 1 cut(s) 914
BmiI GGNNCC 3 cut(s) 81, 285, 514
BmrFI CCNGG 1 cut(s) 914
BmsI GCATC 4 cut(s) 15, 598, 663, 856
BplI GAGNNNNNCTC 2 cut(s) 548, 580
Bpu10I CCTNAGC 1 cut(s) 432
Bpu14I TTCGAA 1 cut(s) 724
BpuEI CTTGAG 1 cut(s) 662
BpuMI CCSGG 1 cut(s) 914
BsaAI YACGTR 1 cut(s) 239
BsaJI CCNNGG 3 cut(s) 379, 444, 689
BsaWI WCCGGW 2 cut(s) 119, 280
Bsc4I CCNNNNNNNGG 1 cut(s) 913
Bse3DI GCAATG 1 cut(s) 792
BseAI TCCGGA 1 cut(s) 119
BseDI CCNNGG 3 cut(s) 379, 444, 689
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 1 cut(s) 913
BseMI GCAATG 1 cut(s) 792
BseMII CTCAG 2 cut(s) 135, 446
BseYI CCCAGC 2 cut(s) 410, 712
Bsh1285I CGRYCG 1 cut(s) 874
BshFI GGCC 1 cut(s) 694
BshNI GGYRCC 2 cut(s) 79, 512
BsiEI CGRYCG 1 cut(s) 874
BsiHKAI GWGCWC 2 cut(s) 736, 900
BsiSI CCGG 3 cut(s) 120, 281, 913
BslI CCNNNNNNNGG 1 cut(s) 913
BsnI GGCC 1 cut(s) 694
Bsp119I TTCGAA 1 cut(s) 724
Bsp1286I GDGCHC 2 cut(s) 736, 900
Bsp13I TCCGGA 1 cut(s) 119
Bsp143I GATC 6 cut(s) 126, 205, 334, 577, 769, 871
BspANI GGCC 1 cut(s) 694
BspCNI CTCAG 2 cut(s) 136, 445
BspEI TCCGGA 1 cut(s) 119
BspHI TCATGA 1 cut(s) 736
BspLI GGNNCC 3 cut(s) 81, 285, 514
BspT104I TTCGAA 1 cut(s) 724
BspT107I GGYRCC 2 cut(s) 79, 512
BspTI CTTAAG 1 cut(s) 668
BsrDI GCAATG 1 cut(s) 792
BssECI CCNNGG 3 cut(s) 379, 444, 689
BssMI GATC 6 cut(s) 126, 205, 334, 577, 769, 871
BssT1I CCWWGG 2 cut(s) 379, 689
Bst4CI ACNGT 1 cut(s) 517
Bst6I CTCTTC 1 cut(s) 571
BstAFI CTTAAG 1 cut(s) 668
BstBAI YACGTR 1 cut(s) 239
BstBI TTCGAA 1 cut(s) 724
BstC8I GCNNGC 2 cut(s) 545, 845
BstDEI CTNAG 2 cut(s) 144, 432
BstF5I GGATG 1 cut(s) 454
BstH2I RGCGCY 1 cut(s) 685
BstHHI GCGC 1 cut(s) 684
BstKTI GATC 6 cut(s) 129, 208, 337, 580, 772, 874
BstMBI GATC 6 cut(s) 126, 205, 334, 577, 769, 871
BstMCI CGRYCG 1 cut(s) 874
BstMWI GCNNNNNNNGC 2 cut(s) 673, 824
BstSCI CCNGG 1 cut(s) 912
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
BsuRI GGCC 1 cut(s) 694
BtsCI GGATG 1 cut(s) 454
Cac8I GCNNGC 2 cut(s) 545, 845
CciI TCATGA 1 cut(s) 736
CfoI GCGC 1 cut(s) 684
Csp6I GTAC 3 cut(s) 80, 868, 943
CviAII CATG 4 cut(s) 622, 646, 664, 737
CviJI RGCY 9 cut(s) 384, 694, 734, 761, 808, 827, 898, 912, 979
CviKI_1 RGCY 9 cut(s) 384, 694, 734, 761, 808, 827, 898, 912, 979
CviQI GTAC 3 cut(s) 80, 868, 943
DdeI CTNAG 2 cut(s) 144, 432
DpnI GATC 6 cut(s) 128, 207, 336, 579, 771, 873
DpnII GATC 6 cut(s) 126, 205, 334, 577, 769, 871
DraI TTTAAA 1 cut(s) 700
Eam1104I CTCTTC 1 cut(s) 571
EarI CTCTTC 1 cut(s) 571
Ecl136II GAGCTC 2 cut(s) 734, 898
Eco130I CCWWGG 2 cut(s) 379, 689
Eco24I GRGCYC 2 cut(s) 736, 900
Eco53kI GAGCTC 2 cut(s) 734, 898
EcoICRI GAGCTC 2 cut(s) 734, 898
EcoT14I CCWWGG 2 cut(s) 379, 689
EcoT38I GRGCYC 2 cut(s) 736, 900
ErhI CCWWGG 2 cut(s) 379, 689
FaeI CATG 4 cut(s) 625, 649, 667, 740
FalI AAGNNNNNCTT 2 cut(s) 884, 916
FatI CATG 4 cut(s) 621, 645, 663, 736
FbaI TGATCA 1 cut(s) 205
FokI GGATG 1 cut(s) 461
FriOI GRGCYC 2 cut(s) 736, 900
FspBI CTAG 2 cut(s) 188, 690
GlaI GCGC 1 cut(s) 683
GsaI CCCAGC 2 cut(s) 414, 716
HaeII RGCGCY 1 cut(s) 685
HaeIII GGCC 1 cut(s) 694
HapII CCGG 3 cut(s) 120, 281, 913
HhaI GCGC 1 cut(s) 684
Hin1II CATG 4 cut(s) 625, 649, 667, 740
Hin6I GCGC 1 cut(s) 682
HinP1I GCGC 1 cut(s) 682
HindIII AAGCTT 1 cut(s) 759
HinfI GANTC 1 cut(s) 659
HpaII CCGG 3 cut(s) 120, 281, 913
HphI GGTGA 3 cut(s) 368, 823, 939
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 2 cut(s) 145, 861
Hpy188III TCNNGA 5 cut(s) 120, 172, 362, 737, 773
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 964
HpyCH4III ACNGT 1 cut(s) 517
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 3 cut(s) 543, 649, 785
HpyF10VI GCNNNNNNNGC 2 cut(s) 673, 824
HpyF3I CTNAG 2 cut(s) 144, 432
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 4 cut(s) 625, 649, 667, 740
HspAI GCGC 1 cut(s) 682
Kpn2I TCCGGA 1 cut(s) 119
KpnI GGTACC 1 cut(s) 83
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 6 cut(s) 126, 205, 334, 577, 769, 871
LmnI GCTCC 1 cut(s) 895
LweI GCATC 4 cut(s) 15, 598, 663, 856
MaeI CTAG 2 cut(s) 188, 690
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 558
MalI GATC 6 cut(s) 128, 207, 336, 579, 771, 873
MboI GATC 6 cut(s) 126, 205, 334, 577, 769, 871
MboII GAAGA 7 cut(s) 143, 558, 737, 788, 793, 874, 899
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 2 cut(s) 736, 900
MluCI AATT 3 cut(s) 257, 415, 934
MlyI GAGTC 1 cut(s) 668
MnlI CCTC 9 cut(s) 26, 79, 139, 221, 321, 439, 441, 631, 807
MroI TCCGGA 1 cut(s) 119
MseI TTAA 5 cut(s) 48, 573, 669, 699, 902
MslI CAYNNNNRTG 1 cut(s) 538
MspCI CTTAAG 1 cut(s) 668
MspI CCGG 3 cut(s) 120, 281, 913
MspR9I CCNGG 1 cut(s) 914
MwoI GCNNNNNNNGC 2 cut(s) 673, 824
NciI CCSGG 1 cut(s) 914
NdeII GATC 6 cut(s) 126, 205, 334, 577, 769, 871
NlaIII CATG 4 cut(s) 625, 649, 667, 740
NlaIV GGNNCC 3 cut(s) 81, 285, 514
NspV TTCGAA 1 cut(s) 724
OliI CACNNNNGTG 1 cut(s) 538
PagI TCATGA 1 cut(s) 736
Ple19I CGATCG 1 cut(s) 874
PleI GAGTC 1 cut(s) 667
PpsI GAGTC 1 cut(s) 667
Ppu21I YACGTR 1 cut(s) 239
PsiI TTATAA 1 cut(s) 855
Psp124BI GAGCTC 2 cut(s) 736, 900
PspFI CCCAGC 2 cut(s) 410, 712
PspN4I GGNNCC 3 cut(s) 81, 285, 514
PsuI RGATCY 1 cut(s) 577
PvuI CGATCG 1 cut(s) 874
RsaI GTAC 3 cut(s) 81, 869, 944
RsaNI GTAC 3 cut(s) 80, 868, 943
RseI CAYNNNNRTG 1 cut(s) 538
SacI GAGCTC 2 cut(s) 736, 900
SaqAI TTAA 5 cut(s) 48, 573, 669, 699, 902
Sau3AI GATC 6 cut(s) 126, 205, 334, 577, 769, 871
SchI GAGTC 1 cut(s) 668
ScrFI CCNGG 1 cut(s) 914
SduI GDGCHC 2 cut(s) 736, 900
SfaNI GCATC 4 cut(s) 15, 598, 663, 856
SfuI TTCGAA 1 cut(s) 724
SmiMI CAYNNNNRTG 1 cut(s) 538
SmlI CTYRAG 2 cut(s) 668, 677
SmoI CTYRAG 2 cut(s) 668, 677
Sse9I AATT 3 cut(s) 257, 415, 934
SspMI CTAG 2 cut(s) 188, 690
SstI GAGCTC 2 cut(s) 736, 900
StyD4I CCNGG 1 cut(s) 912
StyI CCWWGG 2 cut(s) 379, 689
TaaI ACNGT 1 cut(s) 517
TaiI ACGT 1 cut(s) 241
TaqI TCGA 4 cut(s) 129, 302, 525, 724
TasI AATT 3 cut(s) 257, 415, 934
TatI WGTACW 1 cut(s) 942
Tru1I TTAA 5 cut(s) 48, 573, 669, 699, 902
Tru9I TTAA 5 cut(s) 48, 573, 669, 699, 902
TspDTI ATGAA 6 cut(s) 39, 634, 638, 803, 945, 974
TspGWI ACGGA 2 cut(s) 254, 846
Vha464I CTTAAG 1 cut(s) 668
XapI RAATTY 2 cut(s) 257, 934
XmaJI CCTAGG 1 cut(s) 689
XspI CTAG 2 cut(s) 188, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.