Prupe.3G031300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012135
Physical Location & Seq
Forward (+)
2334511 .. 2336926
2416 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G031300.2

Sequence Viewer

Length: 426 bp
ATGGCTGCAACATGTTGCTTCTCCCCTTGTATCCCAACCCAAAAATCTGGTCCAGCAATAAGGCCTTTCAGCAGAGTTTTGAGGCTCAAACACTGTCAAGTTTCTGTCAAGATCAAAAGCTCTACACTCAAGATCAGATGCTCCTTGAGAGAAGAGGTTTTTGAGGATCGGTCCAATGGAATTATTTGCTACAAAGATGACAGAGGTGAAATAATTTGTGAAGGATTTGATGAGGGTCCTAGATATTATCACCAACAGAATCCAAGAACAGGTTGTCAACCCAGCAGAGACGCTGAGATCTTTGATCTACTTCAACAACAAAGGTGGCTTAATTTTATCACAGACACAGAATTGAACCGTGCTGATAAAGGCGGTGTTCTGCAAGAGGACATCAAAAACTGCAATGGCTTCAACACTCACCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.2

Weight (kDa)

8.39

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14280
fragaria_vesca FvH4_6g35780
malus_domestica MD09G1173200.v1.1 MD17G1154100.v1.1
prunus_persica Prupe.3G031300_v2.0.a1 Prupe.3G031300_v2.0.a1
pyrus_communis pycom09g09060 pycom17g14680
rosa_chinensis RchiOBHm_Chr2g0147821
rosa_laevigata RLG00000020281
rosa_multiflora Rmu_sc0000308.1_g000047
rosa_roxburghii Rroxscaffold_2G00099320
rosa_rugosa Rorug02G0402000 Rorug02G0402100
rosa_samantha Rh2AG459100 Rh2BG472400 Rh2CG446500 Rh2DG481400
rosa_wichuraiana Rw2G037550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 372, 421
AclWI GGATC 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 269
AflIII ACRYGT 1 cut(s) 11
AgsI TTSAA 3 cut(s) 314, 355, 412
AluBI AGCT 1 cut(s) 120
AluI AGCT 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 1 cut(s) 174
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 5
ArsI GACNNNNNNTTYG 2 cut(s) 34, 66
AspS9I GGNCC 3 cut(s) 50, 171, 236
AsuHPI GGTGA 3 cut(s) 218, 242, 410
AvaII GGWCC 3 cut(s) 50, 171, 236
BciVI GTATCC 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 1 cut(s) 240
BfuI GTATCC 1 cut(s) 41
BglII AGATCT 1 cut(s) 297
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 3 cut(s) 50, 171, 236
BmgT120I GGNCC 3 cut(s) 50, 171, 236
BmiI GGNNCC 1 cut(s) 237
BmsI GCATC 1 cut(s) 128
BpuEI CTTGAG 2 cut(s) 113, 166
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse3DI GCAATG 1 cut(s) 409
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMI GCAATG 1 cut(s) 409
BseMII CTCAG 1 cut(s) 285
BseYI CCCAGC 1 cut(s) 281
BshFI GGCC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 269
BsmAI GTCTC 1 cut(s) 282
BsmBI CGTCTC 1 cut(s) 282
BsnI GGCC 1 cut(s) 64
Bsp143I GATC 5 cut(s) 111, 132, 166, 297, 304
BspACI CCGC 2 cut(s) 372, 421
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 237
BspPI GGATC 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 409
BssMI GATC 5 cut(s) 111, 132, 166, 297, 304
Bst4CI ACNGT 2 cut(s) 95, 359
Bst6I CTCTTC 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 294
BstKTI GATC 5 cut(s) 114, 135, 169, 300, 307
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 5 cut(s) 111, 132, 166, 297, 304
BstNSI RCATGY 1 cut(s) 15
BstX2I RGATCY 1 cut(s) 297
BstXI CCANNNNNNTGG 1 cut(s) 47
BstYI RGATCY 1 cut(s) 297
BsuI GTATCC 1 cut(s) 41
BsuRI GGCC 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 91
Cfr13I GGNCC 3 cut(s) 50, 171, 236
CseI GACGC 1 cut(s) 299
CspCI CAANNNNNGTGG 2 cut(s) 305, 340
CviAII CATG 1 cut(s) 12
CviJI RGCY 6 cut(s) 5, 64, 85, 120, 328, 408
CviKI_1 RGCY 6 cut(s) 5, 64, 85, 120, 328, 408
DdeI CTNAG 1 cut(s) 294
DpnI GATC 5 cut(s) 113, 134, 168, 299, 306
DpnII GATC 5 cut(s) 111, 132, 166, 297, 304
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco147I AGGCCT 1 cut(s) 64
Eco47I GGWCC 3 cut(s) 50, 171, 236
EcoO109I RGGNCCY 1 cut(s) 236
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 1 cut(s) 15
FaiI YATR 1 cut(s) 13
FatI CATG 1 cut(s) 11
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 240
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 285
HaeIII GGCC 1 cut(s) 64
HgaI GACGC 1 cut(s) 299
Hin1II CATG 1 cut(s) 15
HincII GTYRAC 1 cut(s) 278
HindII GTYRAC 1 cut(s) 278
HinfI GANTC 1 cut(s) 259
HphI GGTGA 3 cut(s) 218, 242, 410
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 2 cut(s) 109, 130
Hpy8I GTNNAC 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 2 cut(s) 95, 359
HpyCH4V TGCA 3 cut(s) 8, 382, 402
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 1 cut(s) 15
Kzo9I GATC 5 cut(s) 111, 132, 166, 297, 304
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 4 cut(s) 33, 66, 255, 295
LweI GCATC 1 cut(s) 128
MaeI CTAG 1 cut(s) 240
MalI GATC 5 cut(s) 113, 134, 168, 299, 306
MboI GATC 5 cut(s) 111, 132, 166, 297, 304
MboII GAAGA 1 cut(s) 164
MflI RGATCY 1 cut(s) 297
MluCI AATT 4 cut(s) 180, 213, 331, 350
MnlI CCTC 6 cut(s) 75, 148, 157, 197, 226, 379
MseI TTAA 1 cut(s) 330
NdeII GATC 5 cut(s) 111, 132, 166, 297, 304
NlaIII CATG 1 cut(s) 15
NlaIV GGNNCC 1 cut(s) 237
NspI RCATGY 1 cut(s) 15
PceI AGGCCT 1 cut(s) 64
PciI ACATGT 1 cut(s) 11
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 1 cut(s) 7
PpuMI RGGWCCY 1 cut(s) 236
PscI ACATGT 1 cut(s) 11
Psp5II RGGWCCY 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 3 cut(s) 50, 171, 236
PspPPI RGGWCCY 1 cut(s) 236
PsuI RGATCY 1 cut(s) 297
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 5 cut(s) 111, 132, 166, 297, 304
Sau96I GGNCC 3 cut(s) 50, 171, 236
SetI ASST 5 cut(s) 122, 159, 208, 274, 326
SfaNI GCATC 1 cut(s) 128
SinI GGWCC 3 cut(s) 50, 171, 236
SmlI CTYRAG 2 cut(s) 128, 145
SmoI CTYRAG 2 cut(s) 128, 145
Sse9I AATT 4 cut(s) 180, 213, 331, 350
SseBI AGGCCT 1 cut(s) 64
SsiI CCGC 2 cut(s) 372, 421
SspMI CTAG 1 cut(s) 240
StuI AGGCCT 1 cut(s) 64
TaaI ACNGT 2 cut(s) 95, 359
TaqII GACCGA 1 cut(s) 159
TasI AATT 4 cut(s) 180, 213, 331, 350
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 1 cut(s) 98
TseI GCWGC 1 cut(s) 5
TspRI CASTG 1 cut(s) 98
VpaK11BI GGWCC 3 cut(s) 50, 171, 236
XceI RCATGY 1 cut(s) 15
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.