Rorug02G0402000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012135
Physical Location & Seq
Forward (+)
51355946 .. 51356658
713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0402000.1

Sequence Viewer

Length: 678 bp
ATGGCTCTTTGGGTTATCTGGTCTGAGCGTAATAATGTACTATGGAAGGGCAGTTTCTTTTGTGCATCTAATGCAACTCAATGGATAGTTAAGCTCCTTGAGGAATACCAATCAGTACATATCGTTGGAGGTACTAAAGCAAGGAGGGAAAAGACGAAATGGGAGAACCCCCCTAGTGGGAGACTGAAGGTGAATATTGATGGCAGTTATAAGGCTGACCATGGTAATGGTGGTGTGAGGGTAGTAATACGTGATGAACATGGTGTCTGTTTGGCAAATTTTGCACACTATTTACCGCATGCTTCTTCCACTTTACATATGGAGGCGGAGGCATGTCGGTCAGGTTTGTTGTTGGCTATCCATCAGAACATGACTGCTCTTGAGTTGGAGAGTGAATTGCTCCCTAATTGTTGCGGCTTTGCAGCAAAACATTTTCTGATATTGGGTGCATTATGGATAATTGTTAGACACATATTCCGTGAAGCAAATGGTGCGGCTAATAGATTGGCGCACCTTGCTAGCTTTAATTTATTGTCTGATGTTTCGTTAGATGAGTTTCCTGTTATTATTCGGGATGTACTCTATGAATATTTTTGTACAGATGCTCGAGGTCAAGATATTATGTCTCACTCGACGCATTTTAATCATTCTATTATAATAAGTCAAGTGTGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

25.38

Weight (kDa)

6.49

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 65 - 131 4.8e-09 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14280
fragaria_vesca FvH4_6g35780
malus_domestica MD09G1173200.v1.1 MD17G1154100.v1.1
prunus_persica Prupe.3G031300_v2.0.a1 Prupe.3G031300_v2.0.a1
pyrus_communis pycom09g09060 pycom17g14680
rosa_chinensis RchiOBHm_Chr2g0147821
rosa_laevigata RLG00000020281
rosa_multiflora Rmu_sc0000308.1_g000047
rosa_roxburghii Rroxscaffold_2G00099320
rosa_rugosa Rorug02G0402000 Rorug02G0402100
rosa_samantha Rh2AG459100 Rh2BG472400 Rh2CG446500 Rh2DG481400
rosa_wichuraiana Rw2G037550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 210, 656
AciI CCGC 4 cut(s) 296, 326, 414, 494
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 5 cut(s) 39, 117, 133, 579, 598
AfiI CCNNNNNNNGG 2 cut(s) 176, 177
AluBI AGCT 2 cut(s) 94, 522
AluI AGCT 2 cut(s) 94, 522
Alw26I GTCTC 2 cut(s) 175, 630
Ama87I CYCGRG 1 cut(s) 606
ApeKI GCWGC 1 cut(s) 422
ApoI RAATTY 1 cut(s) 277
AspLEI GCGC 1 cut(s) 511
AsuHPI GGTGA 1 cut(s) 202
AsuNHI GCTAGC 1 cut(s) 518
AvaI CYCGRG 1 cut(s) 606
BbvI GCAGC 1 cut(s) 434
BccI CCATC 2 cut(s) 194, 369
BcoDI GTCTC 2 cut(s) 175, 630
BfaI CTAG 2 cut(s) 174, 519
BisI GCNGC 3 cut(s) 415, 423, 495
BlsI GCNGC 3 cut(s) 416, 424, 496
BmeT110I CYCGRG 1 cut(s) 606
BmsI GCATC 2 cut(s) 74, 592
BmtI GCTAGC 1 cut(s) 522
BpuEI CTTGAG 2 cut(s) 119, 401
BsaAI YACGTR 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 220
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 177
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 580
BseLI CCNNNNNNNGG 2 cut(s) 176, 177
BseMII CTCAG 1 cut(s) 15
BseXI GCAGC 1 cut(s) 434
BsiHKCI CYCGRG 1 cut(s) 606
BslI CCNNNNNNNGG 2 cut(s) 176, 177
BsmAI GTCTC 2 cut(s) 175, 630
BsoBI CYCGRG 1 cut(s) 606
Bsp1407I TGTACA 1 cut(s) 596
Bsp19I CCATGG 1 cut(s) 220
BspACI CCGC 4 cut(s) 296, 326, 414, 494
BspCNI CTCAG 1 cut(s) 16
BspOI GCTAGC 1 cut(s) 522
BsrGI TGTACA 1 cut(s) 596
BssECI CCNNGG 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 220
BstAPI GCANNNNNTGC 3 cut(s) 71, 281, 491
BstAUI TGTACA 1 cut(s) 596
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 300, 520
BstDEI CTNAG 1 cut(s) 24
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 1 cut(s) 580
BstHHI GCGC 1 cut(s) 511
BstMAI GTCTC 2 cut(s) 175, 630
BstMWI GCNNNNNNNGC 4 cut(s) 71, 281, 491, 515
BstNSI RCATGY 2 cut(s) 302, 336
BstV1I GCAGC 1 cut(s) 434
BstXI CCANNNNNNTGG 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 1 cut(s) 580
Cac8I GCNNGC 2 cut(s) 300, 520
CfoI GCGC 1 cut(s) 511
CseI GACGC 1 cut(s) 643
Csp6I GTAC 5 cut(s) 38, 116, 132, 578, 597
CviAII CATG 5 cut(s) 221, 260, 299, 333, 370
CviJI RGCY 7 cut(s) 5, 94, 215, 356, 417, 497, 522
CviKI_1 RGCY 7 cut(s) 5, 94, 215, 356, 417, 497, 522
CviQI GTAC 5 cut(s) 38, 116, 132, 578, 597
DdeI CTNAG 1 cut(s) 24
EciI GGCGGA 1 cut(s) 341
Eco130I CCWWGG 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 606
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 5 cut(s) 224, 263, 302, 336, 373
FatI CATG 5 cut(s) 220, 259, 298, 332, 369
FauNDI CATATG 1 cut(s) 318
Fnu4HI GCNGC 3 cut(s) 415, 423, 495
FokI GGATG 1 cut(s) 587
Fsp4HI GCNGC 3 cut(s) 415, 423, 495
FspBI CTAG 2 cut(s) 174, 519
GlaI GCGC 1 cut(s) 510
GluI GCNGC 3 cut(s) 415, 423, 495
HgaI GACGC 1 cut(s) 643
HhaI GCGC 1 cut(s) 511
Hin1II CATG 5 cut(s) 224, 263, 302, 336, 373
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HphI GGTGA 1 cut(s) 202
Hpy188I TCNGA 4 cut(s) 25, 366, 438, 538
Hpy188III TCNNGA 3 cut(s) 380, 572, 614
Hpy99I CGWCG 1 cut(s) 637
HpyAV CCTTC 2 cut(s) 40, 181
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 5 cut(s) 65, 74, 284, 422, 449
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 281, 491, 515
HpyF3I CTNAG 1 cut(s) 24
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 5 cut(s) 224, 263, 302, 336, 373
HspAI GCGC 1 cut(s) 509
LmnI GCTCC 2 cut(s) 99, 405
LpnPI CCDG 3 cut(s) 4, 327, 573
Lsp1109I GCAGC 1 cut(s) 434
LweI GCATC 2 cut(s) 74, 592
MaeI CTAG 2 cut(s) 174, 519
MaeII ACGT 1 cut(s) 250
MboII GAAGA 1 cut(s) 297
MluCI AATT 5 cut(s) 277, 395, 406, 459, 526
MmeI TCCRAC 2 cut(s) 106, 366
MnlI CCTC 7 cut(s) 94, 122, 138, 231, 316, 322, 602
MseI TTAA 3 cut(s) 90, 525, 642
MslI CAYNNNNRTG 1 cut(s) 225
MwoI GCNNNNNNNGC 4 cut(s) 71, 281, 491, 515
NcoI CCATGG 1 cut(s) 220
NdeI CATATG 1 cut(s) 318
NheI GCTAGC 1 cut(s) 518
NlaIII CATG 5 cut(s) 224, 263, 302, 336, 373
NspI RCATGY 2 cut(s) 302, 336
PaeI GCATGC 1 cut(s) 302
PaeR7I CTCGAG 1 cut(s) 606
PkrI GCNGC 3 cut(s) 416, 424, 496
Ppu21I YACGTR 1 cut(s) 251
PsiI TTATAA 2 cut(s) 210, 656
PspXI VCTCGAGB 1 cut(s) 606
RsaI GTAC 5 cut(s) 39, 117, 133, 579, 598
RsaNI GTAC 5 cut(s) 38, 116, 132, 578, 597
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 3 cut(s) 90, 525, 642
SatI GCNGC 3 cut(s) 415, 423, 495
SetI ASST 8 cut(s) 96, 133, 192, 253, 346, 516, 524, 613
SfaNI GCATC 2 cut(s) 74, 592
Sfr274I CTCGAG 1 cut(s) 606
SlaI CTCGAG 1 cut(s) 606
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 3 cut(s) 98, 380, 606
SmoI CTYRAG 3 cut(s) 98, 380, 606
SphI GCATGC 1 cut(s) 302
Sse9I AATT 5 cut(s) 277, 395, 406, 459, 526
SsiI CCGC 4 cut(s) 296, 326, 414, 494
SspI AATATT 2 cut(s) 196, 590
SspMI CTAG 2 cut(s) 174, 519
StyI CCWWGG 1 cut(s) 220
TaiI ACGT 1 cut(s) 253
TaqI TCGA 2 cut(s) 607, 632
TaqII GACCGA 1 cut(s) 327
TasI AATT 5 cut(s) 277, 395, 406, 459, 526
TatI WGTACW 4 cut(s) 37, 115, 577, 596
TauI GCSGC 2 cut(s) 417, 497
Tru1I TTAA 3 cut(s) 90, 525, 642
Tru9I TTAA 3 cut(s) 90, 525, 642
TseI GCWGC 1 cut(s) 422
TspDTI ATGAA 2 cut(s) 270, 600
TspGWI ACGGA 1 cut(s) 467
XapI RAATTY 1 cut(s) 277
XceI RCATGY 2 cut(s) 302, 336
XcmI CCANNNNNNNNNTGG 2 cut(s) 227, 316
XhoI CTCGAG 1 cut(s) 606
XspI CTAG 2 cut(s) 174, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.