RLG00000020281

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012135
Physical Location & Seq
Reverse (-)
63213904 .. 63214635
732 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020281

Sequence Viewer

Length: 423 bp
ATGGCTGTTACTTGTTCTCTTCCTCCTTGTTTCTCAATCCTAAAATCTGGTCCTGCTATAAAGCCTTTCAGCTCAGTTTTGAGGCTTAAACACACTTCTCAAGTCACAGTGCTCAAGAAAAGAACATCTGCAGCGCTCAAGATCAGATCTTGCTTTAGAGAAGAGGTTTTCGAGGATCGCTCCAACGGAATAATCTGCTACAAAGATGCCAGAGGGGAGATTATTTGCGAAGGATACGATGAAGGCCCTCGATATCACCACCAGAATCAAAGAATGGTTAATCAGTCAAGAGATGCCGAGATCCTTGATCTTCTTCAACAGAGGTGGTTTAACTTCATGACAGACACAGAATTAGTCAAGGCTGAGAAAGGTGGTGTTCTGCAAGAGGGAATCAACTGCAATGGCTTCAACACTCTCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.92

Weight (kDa)

8.56

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14280
fragaria_vesca FvH4_6g35780
malus_domestica MD09G1173200.v1.1 MD17G1154100.v1.1
prunus_persica Prupe.3G031300_v2.0.a1 Prupe.3G031300_v2.0.a1
pyrus_communis pycom09g09060 pycom17g14680
rosa_chinensis RchiOBHm_Chr2g0147821
rosa_laevigata RLG00000020281
rosa_multiflora Rmu_sc0000308.1_g000047
rosa_roxburghii Rroxscaffold_2G00099320
rosa_rugosa Rorug02G0402000 Rorug02G0402100
rosa_samantha Rh2AG459100 Rh2BG472400 Rh2CG446500 Rh2DG481400
rosa_wichuraiana Rw2G037550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 183, 295
AfeI AGCGCT 1 cut(s) 135
AgsI TTSAA 2 cut(s) 317, 409
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
Alw21I GWGCWC 1 cut(s) 114
AlwI GGATC 2 cut(s) 183, 295
Aor51HI AGCGCT 1 cut(s) 135
AoxI GGCC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 131
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 2 cut(s) 50, 245
AsuHPI GGTGA 1 cut(s) 248
AvaII GGWCC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 143
BciVI GTATCC 1 cut(s) 227
BfaI CTAG 1 cut(s) 421
BfmI CTRYAG 1 cut(s) 129
BfoI RGCGCY 1 cut(s) 137
BfuI GTATCC 1 cut(s) 227
BglII AGATCT 1 cut(s) 146
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 50, 245
BmsI GCATC 2 cut(s) 196, 283
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpuEI CTTGAG 3 cut(s) 84, 98, 122
Bse3DI GCAATG 1 cut(s) 406
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 2 cut(s) 87, 354
BseXI GCAGC 1 cut(s) 143
BshFI GGCC 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 114
BsnI GGCC 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 5 cut(s) 141, 146, 175, 300, 307
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 2 cut(s) 86, 355
BspHI TCATGA 1 cut(s) 336
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 2 cut(s) 183, 295
BsrDI GCAATG 1 cut(s) 406
BssMI GATC 5 cut(s) 141, 146, 175, 300, 307
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 2 cut(s) 24, 156
BstDEI CTNAG 2 cut(s) 73, 363
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 5 cut(s) 144, 149, 178, 303, 310
BstMBI GATC 5 cut(s) 141, 146, 175, 300, 307
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 143
BstX2I RGATCY 2 cut(s) 146, 300
BstYI RGATCY 2 cut(s) 146, 300
BsuI GTATCC 1 cut(s) 227
BsuRI GGCC 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 114
CciI TCATGA 1 cut(s) 336
CfoI GCGC 1 cut(s) 136
Cfr13I GGNCC 2 cut(s) 50, 245
CspCI CAANNNNNGTGG 2 cut(s) 305, 340
CviAII CATG 1 cut(s) 337
CviJI RGCY 7 cut(s) 5, 64, 72, 85, 246, 362, 405
CviKI_1 RGCY 7 cut(s) 5, 64, 72, 85, 246, 362, 405
DdeI CTNAG 2 cut(s) 73, 363
DpnI GATC 5 cut(s) 143, 148, 177, 302, 309
DpnII GATC 5 cut(s) 141, 146, 175, 300, 307
Eam1104I CTCTTC 2 cut(s) 24, 156
EarI CTCTTC 2 cut(s) 24, 156
Eco32I GATATC 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 50
Eco47III AGCGCT 1 cut(s) 135
EcoO109I RGGNCCY 1 cut(s) 245
EcoRV GATATC 1 cut(s) 254
FaeI CATG 1 cut(s) 340
FaiI YATR 2 cut(s) 59, 338
FatI CATG 1 cut(s) 336
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 421
GlaI GCGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 132
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 1 cut(s) 246
HhaI GCGC 1 cut(s) 136
Hin1II CATG 1 cut(s) 340
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HinfI GANTC 2 cut(s) 265, 390
HphI GGTGA 1 cut(s) 248
Hpy188I TCNGA 1 cut(s) 146
Hpy188III TCNNGA 4 cut(s) 115, 139, 288, 337
HpyAV CCTTC 2 cut(s) 224, 236
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 3 cut(s) 131, 382, 399
HpyF3I CTNAG 2 cut(s) 73, 363
Hsp92II CATG 1 cut(s) 340
HspAI GCGC 1 cut(s) 134
Kzo9I GATC 5 cut(s) 141, 146, 175, 300, 307
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 4 cut(s) 33, 66, 223, 275
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 2 cut(s) 196, 283
MaeI CTAG 1 cut(s) 421
MaeIII GTNAC 2 cut(s) 7, 103
MalI GATC 5 cut(s) 143, 148, 177, 302, 309
MboI GATC 5 cut(s) 141, 146, 175, 300, 307
MboII GAAGA 4 cut(s) 11, 173, 302, 305
MflI RGATCY 2 cut(s) 146, 300
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 8 cut(s) 33, 75, 157, 166, 206, 258, 315, 379
MseI TTAA 3 cut(s) 87, 279, 330
NdeII GATC 5 cut(s) 141, 146, 175, 300, 307
NlaIII CATG 1 cut(s) 340
NmeAIII GCCGAG 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 103
PagI TCATGA 1 cut(s) 336
PfeI GAWTC 2 cut(s) 265, 390
PkrI GCNGC 1 cut(s) 133
PspPI GGNCC 2 cut(s) 50, 245
PstI CTGCAG 1 cut(s) 133
PsuI RGATCY 2 cut(s) 146, 300
SaqAI TTAA 3 cut(s) 87, 279, 330
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 5 cut(s) 141, 146, 175, 300, 307
Sau96I GGNCC 2 cut(s) 50, 245
SduI GDGCHC 1 cut(s) 114
SetI ASST 4 cut(s) 74, 168, 326, 373
SfaNI GCATC 2 cut(s) 196, 283
SfcI CTRYAG 1 cut(s) 129
SinI GGWCC 1 cut(s) 50
SmlI CTYRAG 3 cut(s) 99, 113, 137
SmoI CTYRAG 3 cut(s) 99, 113, 137
Sse9I AATT 1 cut(s) 350
SspMI CTAG 1 cut(s) 421
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 2 cut(s) 171, 250
TasI AATT 1 cut(s) 350
TfiI GAWTC 2 cut(s) 265, 390
Tru1I TTAA 3 cut(s) 87, 279, 330
Tru9I TTAA 3 cut(s) 87, 279, 330
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 2 cut(s) 255, 325
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 50
XspI CTAG 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.