pycom09g09060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0012135
Physical Location & Seq
Forward (+)
7192888 .. 7193828
941 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g09060.3

Sequence Viewer

Length: 435 bp
ATGGCTGCAGCAACAGCATGTTGCTTTTCTCCTGCTAATTCTCTCTCCATCCAAAAATCTGGGCCAGTTTTAAAGCCTTTCAGCAGAGTTCTGAGGCTGAAAAGCAGTCAACTAACAGTGAAGATCAAAAGCTCAACCCTCCAGATCAGATCCTCCTTGAGAGAAGAGGTTTTTGAGGATCGGTCCAATGGAATAATATGCTACAAGGATGACAGAGGGGAGATAATTTGTGAAGGGTTTGATGAGGGTCCTAGGTATCACCAACATAATCCAAGAACTCCTTGGCAACCCAGCAGAGACACAGAGATCTTTGATCATCTTCAACAGAGGTGGATTAATTTCATAACAGGCACAGAATTGAGCCGTGGCGACAAAAGCAGTGTTTTTCTGCAAGAGGACATAAAAAACTGCAATGGCTTCAACACTCTCCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.44

Weight (kDa)

8.66

Isoelectric Point (pI)

56.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14280
fragaria_vesca FvH4_6g35780
malus_domestica MD09G1173200.v1.1 MD17G1154100.v1.1
prunus_persica Prupe.3G031300_v2.0.a1 Prupe.3G031300_v2.0.a1
pyrus_communis pycom09g09060 pycom17g14680
rosa_chinensis RchiOBHm_Chr2g0147821
rosa_laevigata RLG00000020281
rosa_multiflora Rmu_sc0000308.1_g000047
rosa_roxburghii Rroxscaffold_2G00099320
rosa_rugosa Rorug02G0402000 Rorug02G0402100
rosa_samantha Rh2AG459100 Rh2BG472400 Rh2CG446500 Rh2DG481400
rosa_wichuraiana Rw2G037550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 430
AclWI GGATC 2 cut(s) 144, 186
AgsI TTSAA 2 cut(s) 323, 421
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 2 cut(s) 144, 186
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 2 cut(s) 5, 8
AseI ATTAAT 1 cut(s) 336
AspA2I CCTAGG 1 cut(s) 251
AspS9I GGNCC 3 cut(s) 62, 183, 248
AsuHPI GGTGA 1 cut(s) 251
AvaII GGWCC 2 cut(s) 183, 248
AvrII CCTAGG 1 cut(s) 251
BbvI GCAGC 1 cut(s) 20
BccI CCATC 1 cut(s) 56
BceAI ACGGC 1 cut(s) 348
BclI TGATCA 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 6
BglII AGATCT 1 cut(s) 306
BisI GCNGC 2 cut(s) 6, 9
BlnI CCTAGG 1 cut(s) 251
BlsI GCNGC 2 cut(s) 7, 10
Bme18I GGWCC 2 cut(s) 183, 248
BmgT120I GGNCC 3 cut(s) 62, 183, 248
BmiI GGNNCC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 178
BsaJI CCNNGG 3 cut(s) 251, 281, 364
Bse1I ACTGG 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 418
BseDI CCNNGG 3 cut(s) 251, 281, 364
BseGI GGATG 2 cut(s) 48, 214
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 20
BseYI CCCAGC 1 cut(s) 290
BshFI GGCC 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 291
BsnI GGCC 1 cut(s) 64
Bsp143I GATC 6 cut(s) 123, 144, 149, 178, 306, 313
BspACI CCGC 1 cut(s) 430
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 84
BspLI GGNNCC 1 cut(s) 249
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 2 cut(s) 144, 186
BsrDI GCAATG 1 cut(s) 418
BsrI ACTGG 1 cut(s) 65
BssECI CCNNGG 3 cut(s) 251, 281, 364
BssMI GATC 6 cut(s) 123, 144, 149, 178, 306, 313
BssT1I CCWWGG 2 cut(s) 251, 281
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 92
BstDSI CCRYGG 1 cut(s) 364
BstF5I GGATG 2 cut(s) 48, 214
BstKTI GATC 6 cut(s) 126, 147, 152, 181, 309, 316
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 6 cut(s) 123, 144, 149, 178, 306, 313
BstMWI GCNNNNNNNGC 2 cut(s) 14, 375
BstNSI RCATGY 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 20
BstX2I RGATCY 2 cut(s) 149, 306
BstXI CCANNNNNNTGG 1 cut(s) 59
BstYI RGATCY 2 cut(s) 149, 306
BsuRI GGCC 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 364
BtsCI GGATG 2 cut(s) 48, 214
BtsI GCAGTG 1 cut(s) 385
BtsIMutI CAGTG 2 cut(s) 123, 385
Cfr13I GGNCC 3 cut(s) 62, 183, 248
CspCI CAANNNNNGTGG 2 cut(s) 311, 346
CviAII CATG 1 cut(s) 18
CviJI RGCY 7 cut(s) 5, 64, 76, 97, 132, 363, 417
CviKI_1 RGCY 7 cut(s) 5, 64, 76, 97, 132, 363, 417
DdeI CTNAG 1 cut(s) 92
DpnI GATC 6 cut(s) 125, 146, 151, 180, 308, 315
DpnII GATC 6 cut(s) 123, 144, 149, 178, 306, 313
DraI TTTAAA 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 2 cut(s) 251, 281
Eco47I GGWCC 2 cut(s) 183, 248
EcoO109I RGGNCCY 1 cut(s) 248
EcoT14I CCWWGG 2 cut(s) 251, 281
ErhI CCWWGG 2 cut(s) 251, 281
FaeI CATG 1 cut(s) 21
FaiI YATR 5 cut(s) 19, 199, 267, 344, 401
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FatI CATG 1 cut(s) 17
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 2 cut(s) 6, 9
FokI GGATG 2 cut(s) 35, 221
Fsp4HI GCNGC 2 cut(s) 6, 9
FspBI CTAG 1 cut(s) 252
GluI GCNGC 2 cut(s) 6, 9
GsaI CCCAGC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 1 cut(s) 64
Hin1II CATG 1 cut(s) 21
HincII GTYRAC 1 cut(s) 110
HindII GTYRAC 1 cut(s) 110
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 2 cut(s) 93, 149
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 3 cut(s) 8, 391, 411
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 375
HpyF3I CTNAG 1 cut(s) 92
Hsp92II CATG 1 cut(s) 21
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 6 cut(s) 123, 144, 149, 178, 306, 313
LpnPI CCDG 6 cut(s) 45, 45, 78, 155, 304, 333
Lsp1109I GCAGC 1 cut(s) 20
MaeI CTAG 1 cut(s) 252
MalI GATC 6 cut(s) 125, 146, 151, 180, 308, 315
MboI GATC 6 cut(s) 123, 144, 149, 178, 306, 313
MboII GAAGA 3 cut(s) 133, 176, 311
MflI RGATCY 2 cut(s) 149, 306
MluCI AATT 4 cut(s) 37, 225, 337, 356
MnlI CCTC 9 cut(s) 87, 149, 160, 163, 169, 209, 238, 321, 388
MseI TTAA 2 cut(s) 71, 336
MwoI GCNNNNNNNGC 2 cut(s) 14, 375
NdeII GATC 6 cut(s) 123, 144, 149, 178, 306, 313
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 1 cut(s) 249
NspI RCATGY 1 cut(s) 21
PkrI GCNGC 2 cut(s) 7, 10
PpuMI RGGWCCY 1 cut(s) 248
PshBI ATTAAT 1 cut(s) 336
Psp5II RGGWCCY 1 cut(s) 248
PspFI CCCAGC 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 3 cut(s) 62, 183, 248
PspPPI RGGWCCY 1 cut(s) 248
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 2 cut(s) 149, 306
SaqAI TTAA 2 cut(s) 71, 336
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 6 cut(s) 123, 144, 149, 178, 306, 313
Sau96I GGNCC 3 cut(s) 62, 183, 248
SetI ASST 4 cut(s) 134, 171, 257, 332
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 2 cut(s) 183, 248
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 4 cut(s) 37, 225, 337, 356
SsiI CCGC 1 cut(s) 430
SspMI CTAG 1 cut(s) 252
StyI CCWWGG 2 cut(s) 251, 281
TaaI ACNGT 1 cut(s) 118
TaqII GACCGA 1 cut(s) 171
TasI AATT 4 cut(s) 37, 225, 337, 356
Tru1I TTAA 2 cut(s) 71, 336
Tru9I TTAA 2 cut(s) 71, 336
TscAI CASTG 2 cut(s) 123, 385
TseI GCWGC 2 cut(s) 5, 8
TspDTI ATGAA 1 cut(s) 331
TspRI CASTG 2 cut(s) 123, 385
VpaK11BI GGWCC 2 cut(s) 183, 248
VspI ATTAAT 1 cut(s) 336
XceI RCATGY 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 279
XmaJI CCTAGG 1 cut(s) 251
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.