Rorug02G0402100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012135
Physical Location & Seq
Reverse (-)
51356704 .. 51358407
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0402100.1

Sequence Viewer

Length: 1080 bp
ATGGAAGCAGTTACAGAATTGGATGAAGCAACTCTAAGAGGCCAAGCAGATGTATGGAAGTACATGCTCGGCTTTGCAGATTCCATGGCTTTGAAATCTGTTGTGGAGCTCCGCATACCAGATATCATACACTCTCATGGTCATGCATTGACTTTGTCTGAAATAGCCTCATCCATCGATTTTGCATCACCCTCTCCAGACATCACATGCCTCTCTCGGATCATGCGGTTGCTGGTCCGCAGAAACATCTTCACCGCACATCATGGCGGTGGAGATTCCGGAGAAACCCTTTACGGGTTGACTCCTTCGTCTAGATGGCTCTTGTATGACTCGGAGCTCACTCTCGCTCCGATGGTTCTCTCGGAGACAAATCCTATTCTAATGGCTCCAATGCACTATTTCAGCCAATGCGTCGAGCAAGGTGCCACATGTGCCTTTGAGAAAGCGCATGGGCGCGACATTGTGCAATTCTTCTCCGAAAACCTTGAGATCAACCGATTGTTCAACGATGCCATGGCGTGTACCTCTAAGATTATAATGAAAGTGATACTTGCCAAATATAAGGGTGGGTTTGATGACGTGGCAAAACTGGTGGATGTTGGTGGTGGGACAGGAACCGCGGTGGCGGAGATTGTGAAGGCGTATCCCAGCATTAAGGGGATCAACTTTGATCTACCATATGTGGTTGCAACAGCGCCGACGTACCATGGGGTGTCACATGTCGGAGGTGACATGTTTGATGAGGGCAATATTCCAAATGCTGATGCAATTTTCATGAAGTGGGTTTTGCACGACTGGAGCGACAGCGATTGCATCAAGATATTGAAGAACTGTCGGAAGGCAATACCGGAGAGAAGTGGCAAGGTGATTATAGTGGACGTTGTTCTGGAGCCAAATGGTGATGGCATGTTCGACGACACAGGCGTAGTTTTTGATCTGCTAATGATTGCTCATACCACAGGTGGAAAGGAGAGGAGCGAGAGTGAATGGAAGAAAATGTTGGAACAAGCAGGCTTCCCTCGCTACAAAATCATCAAAATTCCAACTTTACCGTCCATTATCGAGGCCTACCCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

359

Amino Acids

39.49

Weight (kDa)

5.3

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 19 - 108 1.2e-20 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 136 - 339 4.5e-61 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14280
fragaria_vesca FvH4_6g35780
malus_domestica MD09G1173200.v1.1 MD17G1154100.v1.1
prunus_persica Prupe.3G031300_v2.0.a1 Prupe.3G031300_v2.0.a1
pyrus_communis pycom09g09060 pycom17g14680
rosa_chinensis RchiOBHm_Chr2g0147821
rosa_laevigata RLG00000020281
rosa_multiflora Rmu_sc0000308.1_g000047
rosa_roxburghii Rroxscaffold_2G00099320
rosa_rugosa Rorug02G0402000 Rorug02G0402100
rosa_samantha Rh2AG459100 Rh2BG472400 Rh2CG446500 Rh2DG481400
rosa_wichuraiana Rw2G037550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 536
AasI GACNNNNNNGTC 1 cut(s) 307
AccB1I GGYRCC 1 cut(s) 422
AccII CGCG 2 cut(s) 456, 620
AccIII TCCGGA 1 cut(s) 278
AciI CCGC 8 cut(s) 112, 226, 238, 255, 267, 618, 620, 626
AclWI GGATC 2 cut(s) 227, 668
AcsI RAATTY 1 cut(s) 1038
AfaI GTAC 3 cut(s) 62, 523, 704
AfiI CCNNNNNNNGG 1 cut(s) 294
AflIII ACRYGT 3 cut(s) 428, 718, 732
AgsI TTSAA 3 cut(s) 94, 505, 826
AjiI CACGTC 1 cut(s) 580
AjuI GAANNNNNNNTTGG 2 cut(s) 983, 1015
AluBI AGCT 2 cut(s) 109, 337
AluI AGCT 2 cut(s) 109, 337
Alw21I GWGCWC 2 cut(s) 111, 339
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 2 cut(s) 227, 668
Aor13HI TCCGGA 1 cut(s) 278
AoxI GGCC 2 cut(s) 40, 1065
ApoI RAATTY 1 cut(s) 1038
AspLEI GCGC 3 cut(s) 448, 456, 697
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 5 cut(s) 180, 244, 740, 877, 911
AvaII GGWCC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 422
BanII GRGCYC 2 cut(s) 111, 339
Bbv12I GWGCWC 2 cut(s) 111, 339
BccI CCATC 4 cut(s) 182, 309, 346, 896
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BciVI GTATCC 1 cut(s) 654
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 1 cut(s) 312
BfoI RGCGCY 1 cut(s) 698
BfuI GTATCC 1 cut(s) 654
Bme18I GGWCC 1 cut(s) 235
BmgBI CACGTC 1 cut(s) 580
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 4 cut(s) 387, 424, 616, 891
BmsI GCATC 4 cut(s) 194, 499, 754, 822
BpmI CTGGAG 3 cut(s) 180, 817, 908
BpuEI CTTGAG 1 cut(s) 506
Bsa29I ATCGAT 1 cut(s) 177
BsaJI CCNNGG 4 cut(s) 84, 513, 618, 706
BsaWI WCCGGW 2 cut(s) 278, 847
BsaXI ACNNNNNCTCC 4 cut(s) 331, 361, 967, 997
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse1I ACTGG 2 cut(s) 594, 800
BseAI TCCGGA 1 cut(s) 278
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 4 cut(s) 84, 513, 618, 706
BseGI GGATG 3 cut(s) 28, 170, 601
BseLI CCNNNNNNNGG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 594, 800
BseRI GAGGAG 1 cut(s) 988
BseYI CCCAGC 1 cut(s) 647
Bsh1236I CGCG 2 cut(s) 456, 620
BshFI GGCC 2 cut(s) 42, 1067
BshNI GGYRCC 1 cut(s) 422
BshVI ATCGAT 1 cut(s) 177
BsiHKAI GWGCWC 2 cut(s) 111, 339
BsiSI CCGG 2 cut(s) 279, 848
BslFI GGGAC 1 cut(s) 622
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 622
BsnI GGCC 2 cut(s) 42, 1067
Bsp1286I GDGCHC 2 cut(s) 111, 339
Bsp13I TCCGGA 1 cut(s) 278
Bsp143I GATC 5 cut(s) 219, 489, 660, 670, 934
Bsp19I CCATGG 3 cut(s) 84, 513, 706
BspACI CCGC 8 cut(s) 112, 226, 238, 255, 267, 618, 620, 626
BspANI GGCC 2 cut(s) 42, 1067
BspDI ATCGAT 1 cut(s) 177
BspEI TCCGGA 1 cut(s) 278
BspFNI CGCG 2 cut(s) 456, 620
BspHI TCATGA 1 cut(s) 774
BspLI GGNNCC 4 cut(s) 387, 424, 616, 891
BspPI GGATC 2 cut(s) 227, 668
BspT107I GGYRCC 1 cut(s) 422
BsrI ACTGG 2 cut(s) 594, 800
BssECI CCNNGG 4 cut(s) 84, 513, 618, 706
BssMI GATC 5 cut(s) 219, 489, 660, 670, 934
BssT1I CCWWGG 3 cut(s) 84, 513, 706
Bst4CI ACNGT 2 cut(s) 833, 1053
BstC8I GCNNGC 1 cut(s) 1012
BstDEI CTNAG 2 cut(s) 35, 528
BstDSI CCRYGG 4 cut(s) 84, 513, 618, 706
BstF5I GGATG 3 cut(s) 28, 170, 601
BstFNI CGCG 2 cut(s) 456, 620
BstH2I RGCGCY 1 cut(s) 698
BstHHI GCGC 3 cut(s) 448, 456, 697
BstKTI GATC 5 cut(s) 222, 492, 663, 673, 937
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 5 cut(s) 219, 489, 660, 670, 934
BstMWI GCNNNNNNNGC 2 cut(s) 431, 1020
BstNSI RCATGY 6 cut(s) 67, 210, 432, 722, 736, 910
BstUI CGCG 2 cut(s) 456, 620
Bsu15I ATCGAT 1 cut(s) 177
BsuI GTATCC 1 cut(s) 654
BsuRI GGCC 2 cut(s) 42, 1067
BsuTUI ATCGAT 1 cut(s) 177
BtgI CCRYGG 4 cut(s) 84, 513, 618, 706
BtrI CACGTC 1 cut(s) 580
BtsCI GGATG 3 cut(s) 28, 170, 601
Cac8I GCNNGC 1 cut(s) 1012
CciI TCATGA 1 cut(s) 774
CfoI GCGC 3 cut(s) 448, 456, 697
Cfr13I GGNCC 1 cut(s) 235
Cfr42I CCGCGG 1 cut(s) 621
ClaI ATCGAT 1 cut(s) 177
CseI GACGC 1 cut(s) 400
Csp6I GTAC 3 cut(s) 61, 522, 703
CspCI CAANNNNNGTGG 2 cut(s) 573, 608
CviQI GTAC 3 cut(s) 61, 522, 703
DdeI CTNAG 2 cut(s) 35, 528
DpnI GATC 5 cut(s) 221, 491, 662, 672, 936
DpnII GATC 5 cut(s) 219, 489, 660, 670, 934
DrdI GACNNNNNNGTC 1 cut(s) 307
DseDI GACNNNNNNGTC 1 cut(s) 307
EciI GGCGGA 1 cut(s) 641
Ecl136II GAGCTC 2 cut(s) 109, 337
Eco130I CCWWGG 3 cut(s) 84, 513, 706
Eco147I AGGCCT 1 cut(s) 1067
Eco24I GRGCYC 2 cut(s) 111, 339
Eco32I GATATC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 235
Eco53kI GAGCTC 2 cut(s) 109, 337
EcoICRI GAGCTC 2 cut(s) 109, 337
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 3 cut(s) 84, 513, 706
EcoT22I ATGCAT 1 cut(s) 148
EcoT38I GRGCYC 2 cut(s) 111, 339
ErhI CCWWGG 3 cut(s) 84, 513, 706
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FaqI GGGAC 1 cut(s) 622
FauNDI CATATG 1 cut(s) 679
FokI GGATG 3 cut(s) 35, 157, 608
FriOI GRGCYC 2 cut(s) 111, 339
FspBI CTAG 1 cut(s) 312
GlaI GCGC 3 cut(s) 447, 455, 696
GsaI CCCAGC 1 cut(s) 651
GsuI CTGGAG 3 cut(s) 180, 817, 908
HaeII RGCGCY 1 cut(s) 698
HaeIII GGCC 2 cut(s) 42, 1067
HapII CCGG 2 cut(s) 279, 848
HgaI GACGC 1 cut(s) 400
HhaI GCGC 3 cut(s) 448, 456, 697
Hin6I GCGC 3 cut(s) 446, 454, 695
HinP1I GCGC 3 cut(s) 446, 454, 695
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HinfI GANTC 4 cut(s) 80, 275, 301, 329
HpaII CCGG 2 cut(s) 279, 848
HphI GGTGA 5 cut(s) 180, 244, 740, 877, 911
Hpy166II GTNNAC 3 cut(s) 300, 522, 877
Hpy188I TCNGA 8 cut(s) 160, 219, 334, 351, 364, 478, 725, 837
Hpy188III TCNNGA 6 cut(s) 197, 279, 312, 775, 817, 887
Hpy8I GTNNAC 3 cut(s) 300, 522, 877
Hpy99I CGWCG 3 cut(s) 416, 703, 917
HpyAV CCTTC 3 cut(s) 315, 631, 832
HpyCH4III ACNGT 2 cut(s) 833, 1053
HpyCH4IV ACGT 3 cut(s) 579, 701, 879
HpyCH4V TGCA 9 cut(s) 77, 146, 185, 394, 466, 689, 767, 790, 813
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 1020
HpyF3I CTNAG 2 cut(s) 35, 528
HpySE526I ACGT 3 cut(s) 579, 701, 879
HspAI GCGC 3 cut(s) 446, 454, 695
Kpn2I TCCGGA 1 cut(s) 278
KspI CCGCGG 1 cut(s) 621
Kzo9I GATC 5 cut(s) 219, 489, 660, 670, 934
LmnI GCTCC 8 cut(s) 106, 114, 334, 352, 391, 798, 889, 975
LweI GCATC 4 cut(s) 194, 499, 754, 822
MaeI CTAG 1 cut(s) 312
MaeII ACGT 3 cut(s) 579, 701, 879
MaeIII GTNAC 3 cut(s) 10, 714, 728
MalI GATC 5 cut(s) 221, 491, 662, 672, 936
MboI GATC 5 cut(s) 219, 489, 660, 670, 934
MboII GAAGA 4 cut(s) 241, 463, 838, 1003
MhlI GDGCHC 2 cut(s) 111, 339
MluCI AATT 4 cut(s) 17, 467, 768, 1038
MlyI GAGTC 2 cut(s) 295, 323
MmeI TCCRAC 4 cut(s) 703, 815, 981, 1067
Mph1103I ATGCAT 1 cut(s) 148
MroI TCCGGA 1 cut(s) 278
MseI TTAA 1 cut(s) 654
MslI CAYNNNNRTG 3 cut(s) 135, 141, 267
MspA1I CMGCKG 1 cut(s) 620
MspI CCGG 2 cut(s) 279, 848
MvnI CGCG 2 cut(s) 456, 620
MwoI GCNNNNNNNGC 2 cut(s) 431, 1020
NcoI CCATGG 3 cut(s) 84, 513, 706
NdeI CATATG 1 cut(s) 679
NdeII GATC 5 cut(s) 219, 489, 660, 670, 934
NlaIV GGNNCC 4 cut(s) 387, 424, 616, 891
NmeAIII GCCGAG 1 cut(s) 48
NmuCI GTSAC 2 cut(s) 714, 728
NsiI ATGCAT 1 cut(s) 148
NspI RCATGY 6 cut(s) 67, 210, 432, 722, 736, 910
PagI TCATGA 1 cut(s) 774
PceI AGGCCT 1 cut(s) 1067
PciI ACATGT 3 cut(s) 428, 718, 732
PcsI WCGNNNNNNNCGW 2 cut(s) 798, 921
PfeI GAWTC 2 cut(s) 80, 275
PflFI GACNNNGTC 1 cut(s) 154
PleI GAGTC 2 cut(s) 295, 323
PpsI GAGTC 2 cut(s) 295, 323
PscI ACATGT 3 cut(s) 428, 718, 732
PsiI TTATAA 1 cut(s) 536
Psp124BI GAGCTC 2 cut(s) 111, 339
PspFI CCCAGC 1 cut(s) 647
PspN4I GGNNCC 4 cut(s) 387, 424, 616, 891
PspPI GGNCC 1 cut(s) 235
PsyI GACNNNGTC 1 cut(s) 154
RsaI GTAC 3 cut(s) 62, 523, 704
RsaNI GTAC 3 cut(s) 61, 522, 703
RseI CAYNNNNRTG 3 cut(s) 135, 141, 267
SacI GAGCTC 2 cut(s) 111, 339
SacII CCGCGG 1 cut(s) 621
SaqAI TTAA 1 cut(s) 654
Sau3AI GATC 5 cut(s) 219, 489, 660, 670, 934
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 2 cut(s) 295, 323
SduI GDGCHC 2 cut(s) 111, 339
SfaNI GCATC 4 cut(s) 194, 499, 754, 822
Sfr303I CCGCGG 1 cut(s) 621
SgrBI CCGCGG 1 cut(s) 621
SinI GGWCC 1 cut(s) 235
SmiMI CAYNNNNRTG 3 cut(s) 135, 141, 267
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
Sse9I AATT 4 cut(s) 17, 467, 768, 1038
SseBI AGGCCT 1 cut(s) 1067
SsiI CCGC 8 cut(s) 112, 226, 238, 255, 267, 618, 620, 626
SspI AATATT 1 cut(s) 751
SspMI CTAG 1 cut(s) 312
SstI GAGCTC 2 cut(s) 111, 339
StuI AGGCCT 1 cut(s) 1067
StyI CCWWGG 3 cut(s) 84, 513, 706
TaaI ACNGT 2 cut(s) 833, 1053
TaiI ACGT 3 cut(s) 582, 704, 882
TaqI TCGA 4 cut(s) 177, 414, 912, 1062
TasI AATT 4 cut(s) 17, 467, 768, 1038
TatI WGTACW 1 cut(s) 60
TfiI GAWTC 2 cut(s) 80, 275
Tru1I TTAA 1 cut(s) 654
Tru9I TTAA 1 cut(s) 654
TseFI GTSAC 2 cut(s) 714, 728
Tsp45I GTSAC 2 cut(s) 714, 728
TspDTI ATGAA 4 cut(s) 39, 554, 763, 791
Tth111I GACNNNGTC 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 235
XapI RAATTY 1 cut(s) 1038
XbaI TCTAGA 1 cut(s) 311
XceI RCATGY 6 cut(s) 67, 210, 432, 722, 736, 910
XspI CTAG 1 cut(s) 312
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.