Prupe.3G053600_v2.0.a1

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013699
Physical Location & Seq
Reverse (-)
3771359 .. 3774778
3420 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G053600.1

Sequence Viewer

Length: 1821 bp
ATGATGTTGAAGAGAGCCCTGCAGAATCTGAGAGTACCTTCAGAAAGTAAAAGGAAAAGAATCTCTAGCACGGTATATGATAAAACCTGTGCTATTGATTTGTGTGCAGAAGCATCTGGAGCTCACAGAAAACGAAAGAGGGAACAATTTAGTATCATTGACAAGAACGTTAAGCTTAAAAAGCAGCAAACTGCTAAAGATTCAAATAGCGTGGACAAAAGAGTTGCATCCATGGATTATATCTCACAATTGCCTGATACTGTCATCCATATCATCCTCTCTCTCCTTCGTAGTACAAAAGATGCTGCTCGAACCAGTATCTTGTCTAAGAGGTGGAGGGACTTGTGGACCTCTTTCTCTGTTTTGACATTCGACCAACGGACTTTTCAAGAACTAGAGGGAGTTCAAAGTATGGAGAACTGCAATGAGGTGTTTAAGCAGTTTATTGATAAGTCTCTCCAGAGCCACCTGGATCGTAAGTTAGGCGTATATAAATTTGTTCTACATTTAACCTCCTATGATCCAGCATTGGTTCATCATATGGAACGGTGGTTTGGACTTGCAGTTGAAAATAACGCAAAAGAGCTAGGTTTCCATGTTCATGTGAATGGAACTAGGCGCTACATTTTGCCCAAGAACGTCTTTGCTGCAGAAGGAATAACTGGATTAAGGCTGCAAGGCTGTAAACTTGAAACTTGCAGTATTATAAAGCTTCCTCATCTGCAAAAGCTATATCTGCGAAATCTTCGTGTTGATCAACTGATAATTATGAATCTCATTTCCAGCTGCCCTCTAATTGATGATTTGAGACTCATACAATGCTCGGGGTTAAGTTGTTTGGACATTTCAAGTCTTCTTAAACTTGATAGGGTTGAGGTACACTGCTGCAATGTACTCAAGAGGATAGATATTACAGCTCCTAGTCTTCAAGCATTTTGGTATTCTGGGAAGAAACAAGTGTCCTGCAAAATTAACTTGAAAGATTGCGAGTCTCTGAAAAGGCTGAAACTAGAAGACAGTAGAATGACAAACAACCTGTTTCATGGTCGATTCTTCAGTTTTCCTCTCCTAGAGAAACTGGAGCTAAGTAACTGCCTCAAGTTGACGAATATAAGAATTGGAAGTCATCGGCTGAACAGACTAGTCTTAAGAGGTTGCAAGAATCTAGAGGAAGCGGAGATCGATACTCCAAATCTTCTTTCATTTGAGTATCAAGGTGATAAATTCCCCTTTTCTTTTCTGAATCCTAAGTGTTTGAAGGAGGTCAAGCTTTCATTTGCACCAATGGAAGATAGGAAGCTAAAACTTAACCTCAAATCTGAGCCTCTTTGGTTTCCTAAGTTGCGAGAATTTCTTGGGAAGTTCGACCATAAAGGCTTGAAACTGGTTGTGCGCACCAGCAAGAATATCATCATCCATGAAGATTTTGGAGAAATTTTGCTTTCTACATGCGGTGGTCTCAAAATTGAAATGGTCCAATCTTCAGTGGGTACTGAAGAACTATTAGATATTTCATTGCATAAAGGACATCCACAGACCCTATCTATAATGTCATCTTCCAGCAGTGAATTCCCAAAGTTGGTACATGAGAAGATTATCAATAGAAAGGAGGCTCCAACCTGCTGCACAAGTAATAATCCCAACAACAAGTGTTGGCGACACTTCTTGAAGGATGCCAAGATGGTGAACTTGAAAGCGGCTAAAGGCAAAAATGACTCTGAGTCGATGGCTTGGTTGAAGTCACGTCCAAATGCTAACAAGATTGCTTGTTTTAGATTGGATTGGAAATCTGACAAAGATGGTAGGAAGGCGTCCCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD Jacalin

Protein Analysis

607

Amino Acids

69.58

Weight (kDa)

9.55

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013699)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g32840 FvH4_6g32840 FvH4_6g32840 FvH4_6g32840
malus_domestica MD09G1197600.v1.1 MD17G1178500.v1.1
prunus_persica Prupe.3G053600_v2.0.a1
pyrus_communis pycom09g11420 pycom17g18740
rosa_chinensis RchiOBHm_Chr2g0142131
rosa_laevigata RLG00000019948
rosa_roxburghii Rroxscaffold_2G00103640
rosa_rugosa Rorug02G0370700
rosa_samantha Rh2AG422600 Rh2BG432800 Rh2CG409500 Rh2DG442500
rosa_wichuraiana Rw2G034630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 707
Acc16I TGCGCA 1 cut(s) 1394
Acc36I ACCTGC 1 cut(s) 1628
AciI CCGC 4 cut(s) 1175, 1452, 1697, 1816
AclI AACGTT 1 cut(s) 168
AclWI GGATC 2 cut(s) 480, 515
AcsI RAATTY 5 cut(s) 494, 1223, 1349, 1434, 1568
AcuI CTGAAG 4 cut(s) 24, 1039, 1467, 1515
AcyI GRCGYC 1 cut(s) 1811
AfaI GTAC 6 cut(s) 36, 295, 879, 894, 1492, 1584
AfiI CCNNNNNNNGG 1 cut(s) 1579
AflII CTTAAG 1 cut(s) 1147
AhdI GACNNNNNGTC 1 cut(s) 1720
AhlI ACTAGT 1 cut(s) 1141
AjiI CACGTC 1 cut(s) 1745
AjnI CCWGG 1 cut(s) 468
AjuI GAANNNNNNNTTGG 6 cut(s) 369, 401, 537, 569, 1183, 1215
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 4 cut(s) 459, 802, 996, 1463
AlwI GGATC 2 cut(s) 480, 515
AlwNI CAGNNNCTG 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 823
ApeKI GCWGC 7 cut(s) 184, 305, 647, 673, 786, 885, 1623
ApoI RAATTY 5 cut(s) 494, 1223, 1349, 1434, 1568
AspLEI GCGC 2 cut(s) 621, 1395
AspS9I GGNCC 2 cut(s) 348, 1474
AsuHPI GGTGA 2 cut(s) 1229, 1696
AvaI CYCGRG 1 cut(s) 823
AvaII GGWCC 2 cut(s) 348, 1474
BanII GRGCYC 2 cut(s) 19, 124
BbsI GAAGAC 3 cut(s) 845, 917, 1020
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 7 cut(s) 196, 292, 634, 660, 773, 872, 1610
BccI CCATC 3 cut(s) 1675, 1720, 1793
BciT130I CCWGG 1 cut(s) 470
BclI TGATCA 1 cut(s) 754
BcoDI GTCTC 4 cut(s) 459, 802, 996, 1463
BcuI ACTAGT 1 cut(s) 1141
BfaI CTAG 9 cut(s) 66, 395, 587, 615, 921, 1010, 1070, 1142, 1166
BfmI CTRYAG 2 cut(s) 20, 648
BfoI RGCGCY 1 cut(s) 622
BfrI CTTAAG 1 cut(s) 1147
BfuAI ACCTGC 1 cut(s) 1628
BisI GCNGC 8 cut(s) 185, 306, 648, 674, 787, 886, 1624, 1698
BlsI GCNGC 8 cut(s) 186, 307, 649, 675, 788, 887, 1625, 1699
Bme1390I CCNGG 1 cut(s) 470
Bme18I GGWCC 2 cut(s) 348, 1474
BmeRI GACNNNNNGTC 1 cut(s) 1720
BmeT110I CYCGRG 1 cut(s) 823
BmgBI CACGTC 1 cut(s) 1745
BmgT120I GGNCC 2 cut(s) 348, 1474
BmiI GGNNCC 1 cut(s) 1614
BmrFI CCNGG 1 cut(s) 470
BmsI GCATC 4 cut(s) 122, 236, 292, 1663
BpiI GAAGAC 3 cut(s) 845, 917, 1020
BpmI CTGGAG 3 cut(s) 138, 443, 1100
BpuEI CTTGAG 2 cut(s) 881, 1082
Bsa29I ATCGAT 1 cut(s) 1182
BsaHI GRCGYC 1 cut(s) 1811
BsaI GGTCTC 1 cut(s) 1463
BsaJI CCNNGG 1 cut(s) 231
Bsc4I CCNNNNNNNGG 1 cut(s) 1579
Bse1I ACTGG 4 cut(s) 315, 667, 1083, 1389
Bse3DI GCAATG 3 cut(s) 430, 895, 1514
BseBI CCWGG 1 cut(s) 470
BseCI ATCGAT 1 cut(s) 1182
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 6 cut(s) 227, 264, 273, 1413, 1528, 1678
BseLI CCNNNNNNNGG 1 cut(s) 1579
BseMI GCAATG 3 cut(s) 430, 895, 1514
BseMII CTCAG 3 cut(s) 20, 1311, 1710
BseNI ACTGG 4 cut(s) 315, 667, 1083, 1389
BseXI GCAGC 7 cut(s) 196, 292, 634, 660, 773, 872, 1610
BsgI GTGCAG 2 cut(s) 126, 1609
BshVI ATCGAT 1 cut(s) 1182
BsiHKAI GWGCWC 1 cut(s) 124
BsiHKCI CYCGRG 1 cut(s) 823
BslFI GGGAC 2 cut(s) 353, 1798
BslI CCNNNNNNNGG 1 cut(s) 1579
BsmAI GTCTC 4 cut(s) 459, 802, 996, 1463
BsmFI GGGAC 2 cut(s) 353, 1798
Bso31I GGTCTC 1 cut(s) 1463
BsoBI CYCGRG 1 cut(s) 823
Bsp1286I GDGCHC 2 cut(s) 19, 124
Bsp143I GATC 4 cut(s) 472, 520, 754, 1179
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 4 cut(s) 1175, 1452, 1697, 1816
BspCNI CTCAG 3 cut(s) 21, 1312, 1711
BspDI ATCGAT 1 cut(s) 1182
BspLI GGNNCC 1 cut(s) 1614
BspMAI CTGCAG 2 cut(s) 24, 652
BspMI ACCTGC 1 cut(s) 1628
BspPI GGATC 2 cut(s) 480, 515
BspTI CTTAAG 1 cut(s) 1147
BspTNI GGTCTC 1 cut(s) 1463
BsrDI GCAATG 3 cut(s) 430, 895, 1514
BsrI ACTGG 4 cut(s) 315, 667, 1083, 1389
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 4 cut(s) 472, 520, 754, 1179
BssNI GRCGYC 1 cut(s) 1811
BssT1I CCWWGG 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 4 cut(s) 73, 262, 549, 1019
Bst6I CTCTTC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 1811
BstAFI CTTAAG 1 cut(s) 1147
BstDEI CTNAG 7 cut(s) 29, 327, 1085, 1248, 1320, 1338, 1719
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 6 cut(s) 227, 264, 273, 1413, 1528, 1678
BstH2I RGCGCY 1 cut(s) 622
BstHHI GCGC 2 cut(s) 621, 1395
BstKTI GATC 4 cut(s) 475, 523, 757, 1182
BstMAI GTCTC 4 cut(s) 459, 802, 996, 1463
BstMBI GATC 4 cut(s) 472, 520, 754, 1179
BstMWI GCNNNNNNNGC 3 cut(s) 119, 181, 736
BstNI CCWGG 1 cut(s) 470
BstNSI RCATGY 1 cut(s) 1452
BstSCI CCNGG 1 cut(s) 468
BstSFI CTRYAG 2 cut(s) 20, 648
BstV1I GCAGC 7 cut(s) 196, 292, 634, 660, 773, 872, 1610
BstV2I GAAGAC 3 cut(s) 845, 917, 1020
Bsu15I ATCGAT 1 cut(s) 1182
BsuTUI ATCGAT 1 cut(s) 1182
BtgI CCRYGG 1 cut(s) 231
BtrI CACGTC 1 cut(s) 1745
BtsCI GGATG 6 cut(s) 227, 264, 273, 1413, 1528, 1678
BtsI GCAGTG 2 cut(s) 880, 1570
BtsIMutI CAGTG 3 cut(s) 880, 1491, 1570
BveI ACCTGC 1 cut(s) 1628
CaiI CAGNNNCTG 1 cut(s) 28
CfoI GCGC 2 cut(s) 621, 1395
Cfr13I GGNCC 2 cut(s) 348, 1474
ClaI ATCGAT 1 cut(s) 1182
CseI GACGC 1 cut(s) 1800
Csp6I GTAC 6 cut(s) 35, 294, 878, 893, 1491, 1583
CspCI CAANNNNNGTGG 2 cut(s) 192, 227
CviAII CATG 7 cut(s) 232, 596, 602, 1043, 1418, 1449, 1586
CviQI GTAC 6 cut(s) 35, 294, 878, 893, 1491, 1583
DdeI CTNAG 7 cut(s) 29, 327, 1085, 1248, 1320, 1338, 1719
DpnI GATC 4 cut(s) 474, 522, 756, 1181
DpnII GATC 4 cut(s) 472, 520, 754, 1179
DriI GACNNNNNGTC 1 cut(s) 1720
Eam1104I CTCTTC 1 cut(s) 5
Eam1105I GACNNNNNGTC 1 cut(s) 1720
EarI CTCTTC 1 cut(s) 5
Ecl136II GAGCTC 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 231
Eco24I GRGCYC 2 cut(s) 19, 124
Eco31I GGTCTC 1 cut(s) 1463
Eco47I GGWCC 2 cut(s) 348, 1474
Eco53kI GAGCTC 1 cut(s) 122
Eco57I CTGAAG 4 cut(s) 24, 1039, 1467, 1515
Eco88I CYCGRG 1 cut(s) 823
EcoICRI GAGCTC 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 1568
EcoRII CCWGG 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 231
EcoT38I GRGCYC 2 cut(s) 19, 124
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 7 cut(s) 235, 599, 605, 1046, 1421, 1452, 1589
FalI AAGNNNNNCTT 2 cut(s) 626, 658
FaqI GGGAC 2 cut(s) 353, 1798
FatI CATG 7 cut(s) 231, 595, 601, 1042, 1417, 1448, 1585
FauNDI CATATG 1 cut(s) 540
FbaI TGATCA 1 cut(s) 754
Fnu4HI GCNGC 8 cut(s) 185, 306, 648, 674, 787, 886, 1624, 1698
FokI GGATG 6 cut(s) 214, 251, 260, 1400, 1515, 1685
FriOI GRGCYC 2 cut(s) 19, 124
Fsp4HI GCNGC 8 cut(s) 185, 306, 648, 674, 787, 886, 1624, 1698
FspAI RTGCGCAY 1 cut(s) 1394
FspBI CTAG 9 cut(s) 66, 395, 587, 615, 921, 1010, 1070, 1142, 1166
FspI TGCGCA 1 cut(s) 1394
GlaI GCGC 2 cut(s) 620, 1394
GluI GCNGC 8 cut(s) 185, 306, 648, 674, 787, 886, 1624, 1698
GsuI CTGGAG 3 cut(s) 138, 443, 1100
HaeII RGCGCY 1 cut(s) 622
HgaI GACGC 1 cut(s) 1800
HhaI GCGC 2 cut(s) 621, 1395
Hin1I GRCGYC 1 cut(s) 1811
Hin1II CATG 7 cut(s) 235, 599, 605, 1046, 1421, 1452, 1589
Hin6I GCGC 2 cut(s) 619, 1393
HinP1I GCGC 2 cut(s) 619, 1393
HincII GTYRAC 1 cut(s) 1104
HindII GTYRAC 1 cut(s) 1104
HindIII AAGCTT 3 cut(s) 173, 710, 1268
HphI GGTGA 2 cut(s) 1229, 1696
Hpy166II GTNNAC 6 cut(s) 214, 348, 686, 880, 1104, 1687
Hpy188I TCNGA 7 cut(s) 30, 43, 996, 1242, 1321, 1720, 1792
Hpy188III TCNNGA 6 cut(s) 117, 389, 460, 898, 1166, 1666
Hpy8I GTNNAC 6 cut(s) 214, 348, 686, 880, 1104, 1687
HpyAV CCTTC 6 cut(s) 48, 296, 647, 1252, 1663, 1801
HpyCH4III ACNGT 4 cut(s) 73, 262, 549, 1019
HpyCH4IV ACGT 3 cut(s) 168, 639, 1744
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 181, 736
HpyF3I CTNAG 7 cut(s) 29, 327, 1085, 1248, 1320, 1338, 1719
HpySE526I ACGT 3 cut(s) 168, 639, 1744
Hsp92I GRCGYC 1 cut(s) 1811
Hsp92II CATG 7 cut(s) 235, 599, 605, 1046, 1421, 1452, 1589
HspAI GCGC 2 cut(s) 619, 1393
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 4 cut(s) 472, 520, 754, 1179
LmnI GCTCC 4 cut(s) 119, 922, 1081, 1618
Lsp1109I GCAGC 7 cut(s) 196, 292, 634, 660, 773, 872, 1610
LweI GCATC 4 cut(s) 122, 236, 292, 1663
MaeI CTAG 9 cut(s) 66, 395, 587, 615, 921, 1010, 1070, 1142, 1166
MaeII ACGT 3 cut(s) 168, 639, 1744
MaeIII GTNAC 2 cut(s) 1088, 1740
MalI GATC 4 cut(s) 474, 522, 756, 1181
MboI GATC 4 cut(s) 472, 520, 754, 1179
MfeI CAATTG 1 cut(s) 248
MhlI GDGCHC 2 cut(s) 19, 124
MlyI GAGTC 4 cut(s) 804, 998, 1709, 1730
MmeI TCCRAC 1 cut(s) 1640
MslI CAYNNNNRTG 2 cut(s) 600, 606
MspA1I CMGCKG 1 cut(s) 786
MspCI CTTAAG 1 cut(s) 1147
MspR9I CCNGG 1 cut(s) 470
MunI CAATTG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 470
MwoI GCNNNNNNNGC 3 cut(s) 119, 181, 736
NcoI CCATGG 1 cut(s) 231
NdeI CATATG 1 cut(s) 540
NdeII GATC 4 cut(s) 472, 520, 754, 1179
NlaIII CATG 7 cut(s) 235, 599, 605, 1046, 1421, 1452, 1589
NlaIV GGNNCC 1 cut(s) 1614
NmuCI GTSAC 1 cut(s) 1740
NsbI TGCGCA 1 cut(s) 1394
NspI RCATGY 1 cut(s) 1452
PfeI GAWTC 7 cut(s) 25, 60, 200, 772, 1050, 1162, 1243
PkrI GCNGC 8 cut(s) 186, 307, 649, 675, 788, 887, 1625, 1699
PleI GAGTC 4 cut(s) 804, 997, 1709, 1729
PpsI GAGTC 4 cut(s) 804, 997, 1709, 1729
PsiI TTATAA 1 cut(s) 707
Psp124BI GAGCTC 1 cut(s) 124
Psp1406I AACGTT 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 468
PspGI CCWGG 1 cut(s) 468
PspN4I GGNNCC 1 cut(s) 1614
PspPI GGNCC 2 cut(s) 348, 1474
PstI CTGCAG 2 cut(s) 24, 652
PstNI CAGNNNCTG 1 cut(s) 28
PvuII CAGCTG 1 cut(s) 786
RsaI GTAC 6 cut(s) 36, 295, 879, 894, 1492, 1584
RsaNI GTAC 6 cut(s) 35, 294, 878, 893, 1491, 1583
RseI CAYNNNNRTG 2 cut(s) 600, 606
SacI GAGCTC 1 cut(s) 124
SatI GCNGC 8 cut(s) 185, 306, 648, 674, 787, 886, 1624, 1698
Sau3AI GATC 4 cut(s) 472, 520, 754, 1179
Sau96I GGNCC 2 cut(s) 348, 1474
SchI GAGTC 4 cut(s) 804, 998, 1709, 1730
ScrFI CCNGG 1 cut(s) 470
SduI GDGCHC 2 cut(s) 19, 124
SfaNI GCATC 4 cut(s) 122, 236, 292, 1663
SfcI CTRYAG 2 cut(s) 20, 648
SinI GGWCC 2 cut(s) 348, 1474
SmiMI CAYNNNNRTG 2 cut(s) 600, 606
SmlI CTYRAG 3 cut(s) 896, 1097, 1147
SmoI CTYRAG 3 cut(s) 896, 1097, 1147
SpeI ACTAGT 1 cut(s) 1141
SsiI CCGC 4 cut(s) 1175, 1452, 1697, 1816
SspMI CTAG 9 cut(s) 66, 395, 587, 615, 921, 1010, 1070, 1142, 1166
SstI GAGCTC 1 cut(s) 124
StyD4I CCNGG 1 cut(s) 468
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 4 cut(s) 73, 262, 549, 1019
TaiI ACGT 3 cut(s) 171, 642, 1747
TaqI TCGA 6 cut(s) 310, 372, 1048, 1182, 1365, 1724
TatI WGTACW 2 cut(s) 293, 892
TauI GCSGC 1 cut(s) 1700
TfiI GAWTC 7 cut(s) 25, 60, 200, 772, 1050, 1162, 1243
TscAI CASTG 3 cut(s) 887, 1491, 1570
TseFI GTSAC 1 cut(s) 1740
TseI GCWGC 7 cut(s) 184, 305, 647, 673, 786, 885, 1623
Tsp45I GTSAC 1 cut(s) 1740
TspDTI ATGAA 8 cut(s) 524, 590, 785, 1031, 1191, 1263, 1434, 1503
TspGWI ACGGA 1 cut(s) 394
TspRI CASTG 3 cut(s) 887, 1491, 1570
Vha464I CTTAAG 1 cut(s) 1147
VpaK11BI GGWCC 2 cut(s) 348, 1474
XapI RAATTY 5 cut(s) 494, 1223, 1349, 1434, 1568
XbaI TCTAGA 1 cut(s) 1165
XceI RCATGY 1 cut(s) 1452
XcmI CCANNNNNNNNNTGG 1 cut(s) 1424
XspI CTAG 9 cut(s) 66, 395, 587, 615, 921, 1010, 1070, 1142, 1166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.