pycom09g11420

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0013699
Physical Location & Seq
Reverse (-)
9653879 .. 9654382
504 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g11420.1

Sequence Viewer

Length: 504 bp
ATGTTCAAGAGAGCCTTGCATACAAATCTACCTCGTGATAGGAAGAGTAGGAAAACGGAAGGGGAAGGCGTCTCCGGCGCGTTAGGTTTTGATTTGTGTACAGAAGCGTCTGGAGTTGAAGGAAAACGAAAGAGTGGAATATTAAGCATGACTGACAAGAGTGTTAAGCTTAAACAAAAGGAAGGGGTGGGAAATTGGAATGGTGTGGAGATGACAGTTGAATGCGTGGATTATGTCTCGCAATTGCCCGAAACTGTCATCCATCTCATACTGTCTCTCCTTCGTGGTACAAAAGATGCTGCTCGAACCAGTACCTTGTCGAAGAGGTGGAGGGACTTGTGGACCTCTTTCTCTGTTTTGGCATTCGATCAGTGCAAGTTTCAAGCACCAGAGGGAGTTAAAGATAAGAAGACGTGCAATGCGATGTTTAAGGAGTTTGTTGACAAGTCTCTCCAAAGCCACTTTGAGCGTAATTTGGGTATATATAAGCTTGTGCTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD Jacalin

Protein Analysis

168

Amino Acids

18.81

Weight (kDa)

9.41

Isoelectric Point (pI)

30.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013699)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g32840 FvH4_6g32840 FvH4_6g32840 FvH4_6g32840
malus_domestica MD09G1197600.v1.1 MD17G1178500.v1.1
prunus_persica Prupe.3G053600_v2.0.a1
pyrus_communis pycom09g11420 pycom17g18740
rosa_chinensis RchiOBHm_Chr2g0142131
rosa_laevigata RLG00000019948
rosa_roxburghii Rroxscaffold_2G00103640
rosa_rugosa Rorug02G0370700
rosa_samantha Rh2AG422600 Rh2BG432800 Rh2CG409500 Rh2DG442500
rosa_wichuraiana Rw2G034630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 3 cut(s) 100, 289, 313
AgsI TTSAA 4 cut(s) 7, 119, 221, 383
AjiI CACGTC 1 cut(s) 414
AluBI AGCT 2 cut(s) 169, 490
AluI AGCT 2 cut(s) 169, 490
Alw26I GTCTC 4 cut(s) 76, 241, 279, 453
ApeKI GCWGC 2 cut(s) 299, 496
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 342
AvaII GGWCC 1 cut(s) 342
BauI CACGAG 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 416
BbvI GCAGC 2 cut(s) 286, 483
BccI CCATC 1 cut(s) 270
BcoDI GTCTC 4 cut(s) 76, 241, 279, 453
BisI GCNGC 2 cut(s) 300, 497
BlsI GCNGC 2 cut(s) 301, 498
Bme18I GGWCC 1 cut(s) 342
BmgBI CACGTC 1 cut(s) 414
BmgT120I GGNCC 1 cut(s) 342
BmsI GCATC 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 416
BpmI CTGGAG 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bse1I ACTGG 1 cut(s) 309
Bse3DI GCAATG 1 cut(s) 424
BseGI GGATG 1 cut(s) 258
BseMI GCAATG 1 cut(s) 424
BseNI ACTGG 1 cut(s) 309
BseXI GCAGC 2 cut(s) 286, 483
Bsh1236I CGCG 1 cut(s) 80
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 1 cut(s) 347
BsmAI GTCTC 4 cut(s) 76, 241, 279, 453
BsmBI CGTCTC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 347
BsmI GAATGC 2 cut(s) 227, 362
Bsp1407I TGTACA 1 cut(s) 98
Bsp143I GATC 1 cut(s) 367
BspFNI CGCG 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 424
BsrGI TGTACA 1 cut(s) 98
BsrI ACTGG 1 cut(s) 309
BssMI GATC 1 cut(s) 367
BssNI GRCGYC 1 cut(s) 69
BssSI CACGAG 1 cut(s) 33
Bst2BI CACGAG 1 cut(s) 33
Bst4CI ACNGT 3 cut(s) 217, 256, 273
Bst6I CTCTTC 2 cut(s) 38, 317
BstACI GRCGYC 1 cut(s) 69
BstAUI TGTACA 1 cut(s) 98
BstF5I GGATG 1 cut(s) 258
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 1 cut(s) 370
BstMAI GTCTC 4 cut(s) 76, 241, 279, 453
BstMBI GATC 1 cut(s) 367
BstMWI GCNNNNNNNGC 2 cut(s) 75, 496
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 2 cut(s) 286, 483
BstV2I GAAGAC 1 cut(s) 416
BtgZI GCGATG 1 cut(s) 437
BtrI CACGTC 1 cut(s) 414
BtsCI GGATG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 377
CfoI GCGC 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 342
CseI GACGC 2 cut(s) 58, 96
Csp6I GTAC 3 cut(s) 99, 288, 312
CviAII CATG 1 cut(s) 148
CviJI RGCY 4 cut(s) 14, 169, 459, 490
CviKI_1 RGCY 4 cut(s) 14, 169, 459, 490
CviQI GTAC 3 cut(s) 99, 288, 312
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
Eam1104I CTCTTC 2 cut(s) 38, 317
EarI CTCTTC 2 cut(s) 38, 317
Eco47I GGWCC 1 cut(s) 342
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 1 cut(s) 151
FaiI YATR 7 cut(s) 21, 149, 234, 269, 482, 484, 486
FalI AAGNNNNNCTT 1 cut(s) 31
FaqI GGGAC 1 cut(s) 347
FatI CATG 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 300, 497
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 2 cut(s) 300, 497
GlaI GCGC 1 cut(s) 79
GluI GCNGC 2 cut(s) 300, 497
GsuI CTGGAG 1 cut(s) 132
HapII CCGG 1 cut(s) 75
HgaI GACGC 2 cut(s) 58, 96
HhaI GCGC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HindIII AAGCTT 2 cut(s) 167, 488
HpaII CCGG 1 cut(s) 75
Hpy166II GTNNAC 3 cut(s) 99, 342, 442
Hpy188III TCNNGA 3 cut(s) 7, 35, 111
Hpy8I GTNNAC 3 cut(s) 99, 342, 442
HpyAV CCTTC 5 cut(s) 53, 59, 113, 176, 290
HpyCH4III ACNGT 3 cut(s) 217, 256, 273
HpyCH4IV ACGT 1 cut(s) 413
HpyCH4V TGCA 4 cut(s) 19, 375, 417, 499
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 496
HpySE526I ACGT 1 cut(s) 413
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 367
LpnPI CCDG 4 cut(s) 88, 96, 322, 402
Lsp1109I GCAGC 2 cut(s) 286, 483
LweI GCATC 1 cut(s) 286
MaeII ACGT 1 cut(s) 413
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 3 cut(s) 55, 334, 421
MfeI CAATTG 1 cut(s) 242
MluCI AATT 3 cut(s) 193, 242, 472
MnlI CCTC 5 cut(s) 42, 318, 324, 355, 385
MseI TTAA 5 cut(s) 143, 165, 171, 399, 429
MspI CCGG 1 cut(s) 75
MunI CAATTG 1 cut(s) 242
Mva1269I GAATGC 2 cut(s) 227, 362
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 75, 496
NdeII GATC 1 cut(s) 367
NlaIII CATG 1 cut(s) 151
PcsI WCGNNNNNNNCGW 1 cut(s) 419
PctI GAATGC 2 cut(s) 227, 362
PkrI GCNGC 2 cut(s) 301, 498
PspPI GGNCC 1 cut(s) 342
RsaI GTAC 3 cut(s) 100, 289, 313
RsaNI GTAC 3 cut(s) 99, 288, 312
SaqAI TTAA 5 cut(s) 143, 165, 171, 399, 429
SatI GCNGC 2 cut(s) 300, 497
Sau3AI GATC 1 cut(s) 367
Sau96I GGNCC 1 cut(s) 342
SetI ASST 8 cut(s) 34, 88, 171, 317, 329, 347, 416, 492
SfaNI GCATC 1 cut(s) 286
SinI GGWCC 1 cut(s) 342
Sse9I AATT 3 cut(s) 193, 242, 472
SspI AATATT 1 cut(s) 141
TaaI ACNGT 3 cut(s) 217, 256, 273
TaiI ACGT 1 cut(s) 416
TaqI TCGA 3 cut(s) 304, 320, 366
TasI AATT 3 cut(s) 193, 242, 472
TatI WGTACW 1 cut(s) 98
Tru1I TTAA 5 cut(s) 143, 165, 171, 399, 429
Tru9I TTAA 5 cut(s) 143, 165, 171, 399, 429
TscAI CASTG 1 cut(s) 377
TseI GCWGC 2 cut(s) 299, 496
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 1 cut(s) 377
VpaK11BI GGWCC 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.