pycom17g18740

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013699
Physical Location & Seq
Reverse (-)
16183582 .. 16184667
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g18740.1

Sequence Viewer

Length: 1086 bp
ATGTTGAAGAGAGCCCTGCATAAAAATTTAGGAGTACCTCGTGATAGGAAGAGGAGGAAAAGGGAAAGCGTCTCTGGCGCGTTAGGTATTGATTTGTGTACAGAAGCATCTGGAATTGAAAGAAAAAGAAAGAGAGGAGAATTAAGCATGATTGACAAGAATGTTAAGCTTAAACAAACGAAAGGGACCGTAAATTTGAATGGTGTGGAGATAAGAGTTGAGTGCGTGGATTATATCTCGCACTTGCCCGAAACTGTGATCCATCTCATCCTGTCTCTCCTTCGTAGTACAAAAGATGCCGCTCGAACCAGTACCTTGTCAAAGAGGTGGAGGGACTTGTGGACCTCATTCTCTGTTTTGGCATTCGATCAGCGGAAGTTTCAAAAACCAGAGGGAGTTAAAGATAAGAGGAAATGCAATGCGATGTTTAAGGAGTTTGTTGACAAATCTCTCCAGAGCCACTTTGACCGTAATTTGGGTATATATAAGCTTGTGCTGCATGTGAACTCGTTTGATCAAGATATGCCTCATCGTATTGAAAAATGGATTAGACTTGCAGCTGAAAATAAAACAAAAGAGATTGGTTTCCATGCTCACAAGAAAATATGCGGTCGCTACATGGTGCCTAGGAATGTCTTTGCTTCGGAAACCATAACTGGATTAAGGCTAGAAGGCTGTAGAGTGGATACTTCCAGTAATATAAAGCTTCCTAATCTGCAAAAGCTGTATCTGCGAAAAATCCATTTTGATGAATCAATAATTATAAATCTCATTACCAGCTGCCCTCTAATTAACGATTTGAGACTCATACTTTGCTCGGGGTTAAATAATCTGCAGATTTCAAGTCTCCTTAAACTTTATAGGGTTGAAGTACACTACTGCCATGGACTAGCGATGATTGAAATCAAAGCTCCAAGTCTTGAAACATTTTGGTTTTGCGGGAAGAAATACATGTCCTGCAAAATTAAGTTGGCTGCATGTGAGTCTCTTAAAAGACTGACATTAGAGGACAGTAGAATGACAGACAACCAATTTCGTGATCGGTTCTTTAAGTTTCCTCTCCTGGAGAAACTGAAAGGTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD Jacalin

Protein Analysis

362

Amino Acids

41.85

Weight (kDa)

9.83

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 159 - 356 1.6e-20 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 180 - 351 6.2e-16 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013699)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g32840 FvH4_6g32840 FvH4_6g32840 FvH4_6g32840
malus_domestica MD09G1197600.v1.1 MD17G1178500.v1.1
prunus_persica Prupe.3G053600_v2.0.a1
pyrus_communis pycom09g11420 pycom17g18740
rosa_chinensis RchiOBHm_Chr2g0142131
rosa_laevigata RLG00000019948
rosa_roxburghii Rroxscaffold_2G00103640
rosa_rugosa Rorug02G0370700
rosa_samantha Rh2AG422600 Rh2BG432800 Rh2CG409500 Rh2DG442500
rosa_wichuraiana Rw2G034630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 764
AccB1I GGYRCC 1 cut(s) 622
AccBSI CCGCTC 1 cut(s) 302
AccII CGCG 1 cut(s) 80
AciI CCGC 4 cut(s) 300, 373, 609, 939
AclWI GGATC 1 cut(s) 253
AcsI RAATTY 2 cut(s) 25, 193
AfaI GTAC 5 cut(s) 36, 100, 289, 313, 873
AfiI CCNNNNNNNGG 1 cut(s) 475
AflIII ACRYGT 1 cut(s) 951
AgsI TTSAA 9 cut(s) 7, 119, 199, 383, 539, 843, 869, 902, 923
AjnI CCWGG 1 cut(s) 1062
AluBI AGCT 7 cut(s) 169, 490, 560, 706, 724, 780, 911
AluI AGCT 7 cut(s) 169, 490, 560, 706, 724, 780, 911
Alw26I GTCTC 5 cut(s) 76, 279, 796, 851, 990
AlwI GGATC 1 cut(s) 253
Ama87I CYCGRG 1 cut(s) 817
ApeKI GCWGC 4 cut(s) 496, 557, 780, 974
ApoI RAATTY 2 cut(s) 25, 193
ArsI GACNNNNNNTTYG 4 cut(s) 178, 210, 795, 827
AspA2I CCTAGG 1 cut(s) 626
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 3 cut(s) 186, 342, 1079
AvaI CYCGRG 1 cut(s) 817
AvaII GGWCC 3 cut(s) 186, 342, 1079
AvrII CCTAGG 1 cut(s) 626
BanI GGYRCC 1 cut(s) 622
BanII GRGCYC 1 cut(s) 16
BauI CACGAG 1 cut(s) 39
BbvI GCAGC 4 cut(s) 483, 569, 767, 961
BccI CCATC 1 cut(s) 270
BciT130I CCWGG 1 cut(s) 1064
BciVI GTATCC 1 cut(s) 679
BclI TGATCA 1 cut(s) 514
BcoDI GTCTC 5 cut(s) 76, 279, 796, 851, 990
BfaI CTAG 3 cut(s) 627, 668, 890
BfmI CTRYAG 2 cut(s) 676, 833
BfuI GTATCC 1 cut(s) 679
BisI GCNGC 5 cut(s) 300, 497, 558, 781, 975
BlnI CCTAGG 1 cut(s) 626
BlsI GCNGC 5 cut(s) 301, 498, 559, 782, 976
Bme1390I CCNGG 1 cut(s) 1064
Bme18I GGWCC 3 cut(s) 186, 342, 1079
BmeT110I CYCGRG 1 cut(s) 817
BmgT120I GGNCC 3 cut(s) 186, 342, 1079
BmiI GGNNCC 2 cut(s) 187, 624
BmrFI CCNGG 1 cut(s) 1064
BmsI GCATC 2 cut(s) 116, 286
BpmI CTGGAG 2 cut(s) 437, 1085
BsaBI GATNNNNATC 1 cut(s) 902
BsaJI CCNNGG 2 cut(s) 626, 883
Bsc4I CCNNNNNNNGG 1 cut(s) 475
Bse1I ACTGG 3 cut(s) 309, 661, 693
Bse3DI GCAATG 1 cut(s) 424
Bse8I GATNNNNATC 1 cut(s) 902
BseBI CCWGG 1 cut(s) 1064
BseDI CCNNGG 2 cut(s) 626, 883
BseGI GGATG 1 cut(s) 267
BseJI GATNNNNATC 1 cut(s) 902
BseLI CCNNNNNNNGG 1 cut(s) 475
BseMI GCAATG 1 cut(s) 424
BseNI ACTGG 3 cut(s) 309, 661, 693
BseRI GAGGAG 2 cut(s) 67, 150
BseXI GCAGC 4 cut(s) 483, 569, 767, 961
Bsh1236I CGCG 1 cut(s) 80
Bsh1285I CGRYCG 1 cut(s) 613
BshNI GGYRCC 1 cut(s) 622
BsiEI CGRYCG 1 cut(s) 613
BsiHKCI CYCGRG 1 cut(s) 817
BslFI GGGAC 2 cut(s) 199, 347
BslI CCNNNNNNNGG 1 cut(s) 475
BsmAI GTCTC 5 cut(s) 76, 279, 796, 851, 990
BsmBI CGTCTC 1 cut(s) 76
BsmFI GGGAC 2 cut(s) 199, 347
BsmI GAATGC 1 cut(s) 362
BsoBI CYCGRG 1 cut(s) 817
Bsp1286I GDGCHC 1 cut(s) 16
Bsp1407I TGTACA 1 cut(s) 98
Bsp143I GATC 4 cut(s) 258, 367, 514, 1039
Bsp19I CCATGG 1 cut(s) 883
BspACI CCGC 4 cut(s) 300, 373, 609, 939
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 2 cut(s) 187, 624
BspMAI CTGCAG 1 cut(s) 837
BspPI GGATC 1 cut(s) 253
BspT107I GGYRCC 1 cut(s) 622
BsrBI CCGCTC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 424
BsrGI TGTACA 1 cut(s) 98
BsrI ACTGG 3 cut(s) 309, 661, 693
BssECI CCNNGG 2 cut(s) 626, 883
BssMI GATC 4 cut(s) 258, 367, 514, 1039
BssSI CACGAG 1 cut(s) 39
BssT1I CCWWGG 2 cut(s) 626, 883
Bst2BI CACGAG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 1064
Bst4CI ACNGT 4 cut(s) 190, 256, 470, 1013
Bst6I CTCTTC 2 cut(s) 2, 44
BstAUI TGTACA 1 cut(s) 98
BstDSI CCRYGG 1 cut(s) 883
BstF5I GGATG 1 cut(s) 267
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 4 cut(s) 261, 370, 517, 1042
BstMAI GTCTC 5 cut(s) 76, 279, 796, 851, 990
BstMBI GATC 4 cut(s) 258, 367, 514, 1039
BstMCI CGRYCG 1 cut(s) 613
BstMWI GCNNNNNNNGC 3 cut(s) 75, 496, 730
BstNI CCWGG 1 cut(s) 1064
BstNSI RCATGY 3 cut(s) 503, 955, 981
BstSCI CCNGG 1 cut(s) 1062
BstSFI CTRYAG 2 cut(s) 676, 833
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 4 cut(s) 483, 569, 767, 961
BsuI GTATCC 1 cut(s) 679
BtgI CCRYGG 1 cut(s) 883
BtgZI GCGATG 2 cut(s) 437, 908
BtsCI GGATG 1 cut(s) 267
CfoI GCGC 1 cut(s) 80
Cfr13I GGNCC 3 cut(s) 186, 342, 1079
CseI GACGC 1 cut(s) 58
Csp6I GTAC 5 cut(s) 35, 99, 288, 312, 872
CviAII CATG 7 cut(s) 148, 500, 590, 619, 884, 952, 978
CviQI GTAC 5 cut(s) 35, 99, 288, 312, 872
DpnI GATC 4 cut(s) 260, 369, 516, 1041
DpnII GATC 4 cut(s) 258, 367, 514, 1039
Eam1104I CTCTTC 2 cut(s) 2, 44
EarI CTCTTC 2 cut(s) 2, 44
Eco130I CCWWGG 2 cut(s) 626, 883
Eco24I GRGCYC 1 cut(s) 16
Eco47I GGWCC 3 cut(s) 186, 342, 1079
Eco88I CYCGRG 1 cut(s) 817
EcoRII CCWGG 1 cut(s) 1062
EcoT14I CCWWGG 2 cut(s) 626, 883
EcoT38I GRGCYC 1 cut(s) 16
ErhI CCWWGG 2 cut(s) 626, 883
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 7 cut(s) 151, 503, 593, 622, 887, 955, 981
FaqI GGGAC 2 cut(s) 199, 347
FatI CATG 7 cut(s) 147, 499, 589, 618, 883, 951, 977
FauI CCCGC 1 cut(s) 932
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 5 cut(s) 300, 497, 558, 781, 975
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 5 cut(s) 300, 497, 558, 781, 975
FspBI CTAG 3 cut(s) 627, 668, 890
GlaI GCGC 1 cut(s) 79
GluI GCNGC 5 cut(s) 300, 497, 558, 781, 975
GsuI CTGGAG 2 cut(s) 437, 1085
HgaI GACGC 1 cut(s) 58
HhaI GCGC 1 cut(s) 80
Hin1II CATG 7 cut(s) 151, 503, 593, 622, 887, 955, 981
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HindIII AAGCTT 3 cut(s) 167, 488, 704
HinfI GANTC 3 cut(s) 752, 804, 983
Hpy166II GTNNAC 5 cut(s) 99, 342, 442, 505, 874
Hpy188I TCNGA 1 cut(s) 646
Hpy188III TCNNGA 6 cut(s) 41, 111, 454, 518, 920, 1037
Hpy8I GTNNAC 5 cut(s) 99, 342, 442, 505, 874
HpyAV CCTTC 2 cut(s) 290, 665
HpyCH4III ACNGT 4 cut(s) 190, 256, 470, 1013
HpyCH4V TGCA 8 cut(s) 19, 417, 499, 557, 718, 835, 960, 977
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 496, 730
Hsp92II CATG 7 cut(s) 151, 503, 593, 622, 887, 955, 981
HspAI GCGC 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 4 cut(s) 258, 367, 514, 1039
LmnI GCTCC 1 cut(s) 916
Lsp1109I GCAGC 4 cut(s) 483, 569, 767, 961
LweI GCATC 2 cut(s) 116, 286
MaeI CTAG 3 cut(s) 627, 668, 890
MalI GATC 4 cut(s) 260, 369, 516, 1041
MbiI CCGCTC 1 cut(s) 302
MboI GATC 4 cut(s) 258, 367, 514, 1039
MboII GAAGA 3 cut(s) 19, 61, 955
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 9 cut(s) 25, 114, 140, 193, 472, 759, 789, 963, 1031
MlyI GAGTC 2 cut(s) 798, 992
MslI CAYNNNNRTG 1 cut(s) 747
MspA1I CMGCKG 3 cut(s) 373, 560, 780
MspR9I CCNGG 1 cut(s) 1064
Mva1269I GAATGC 1 cut(s) 362
MvaI CCWGG 1 cut(s) 1064
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 3 cut(s) 75, 496, 730
NcoI CCATGG 1 cut(s) 883
NdeII GATC 4 cut(s) 258, 367, 514, 1039
NlaIII CATG 7 cut(s) 151, 503, 593, 622, 887, 955, 981
NlaIV GGNNCC 2 cut(s) 187, 624
NspI RCATGY 3 cut(s) 503, 955, 981
PciI ACATGT 1 cut(s) 951
PctI GAATGC 1 cut(s) 362
PfeI GAWTC 1 cut(s) 752
PfoI TCCNGGA 1 cut(s) 1062
PkrI GCNGC 5 cut(s) 301, 498, 559, 782, 976
PleI GAGTC 2 cut(s) 798, 991
PpsI GAGTC 2 cut(s) 798, 991
PscI ACATGT 1 cut(s) 951
PsiI TTATAA 1 cut(s) 764
Psp6I CCWGG 1 cut(s) 1062
PspGI CCWGG 1 cut(s) 1062
PspN4I GGNNCC 2 cut(s) 187, 624
PspPI GGNCC 3 cut(s) 186, 342, 1079
PstI CTGCAG 1 cut(s) 837
PvuII CAGCTG 2 cut(s) 560, 780
RsaI GTAC 5 cut(s) 36, 100, 289, 313, 873
RsaNI GTAC 5 cut(s) 35, 99, 288, 312, 872
RseI CAYNNNNRTG 1 cut(s) 747
SatI GCNGC 5 cut(s) 300, 497, 558, 781, 975
Sau3AI GATC 4 cut(s) 258, 367, 514, 1039
Sau96I GGNCC 3 cut(s) 186, 342, 1079
SchI GAGTC 2 cut(s) 798, 992
ScrFI CCNGG 1 cut(s) 1064
SduI GDGCHC 1 cut(s) 16
SfaNI GCATC 2 cut(s) 116, 286
SfcI CTRYAG 2 cut(s) 676, 833
SinI GGWCC 3 cut(s) 186, 342, 1079
SmiMI CAYNNNNRTG 1 cut(s) 747
Sse9I AATT 9 cut(s) 25, 114, 140, 193, 472, 759, 789, 963, 1031
SsiI CCGC 4 cut(s) 300, 373, 609, 939
SspMI CTAG 3 cut(s) 627, 668, 890
StyD4I CCNGG 1 cut(s) 1062
StyI CCWWGG 2 cut(s) 626, 883
TaaI ACNGT 4 cut(s) 190, 256, 470, 1013
TaqI TCGA 2 cut(s) 304, 366
TasI AATT 9 cut(s) 25, 114, 140, 193, 472, 759, 789, 963, 1031
TatI WGTACW 3 cut(s) 98, 287, 871
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 1 cut(s) 752
TseI GCWGC 4 cut(s) 496, 557, 780, 974
TspDTI ATGAA 1 cut(s) 765
TspGWI ACGGA 1 cut(s) 1071
VpaK11BI GGWCC 3 cut(s) 186, 342, 1079
XapI RAATTY 2 cut(s) 25, 193
XceI RCATGY 3 cut(s) 503, 955, 981
XmaJI CCTAGG 1 cut(s) 626
XspI CTAG 3 cut(s) 627, 668, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.