Rorug02G0370700

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013699
Physical Location & Seq
Reverse (-)
47288059 .. 47290365
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0370700.1

Sequence Viewer

Length: 435 bp
ATGGCGGCGGCAACTGCAGCAGCAGCTTCAGGAGCCCCCAAGCTCCTCCTCCGGTACTCCCCCTCTTCTGGGCCTGCAAACAACTTCATGGCCTCTTCAAAAGGTGCCATCCACATCCCAGATTGCTTCTCTTCCACAAGGGCCAAAGGGTCTTTTCCCATCCGAGCTCTTGACCCTCGCAGACGACAAGAAGAAGAAGCAGAAGAAAATTCAGGCATCGTTAACAACGCCACCGGTTTCAACTCTCGGAACGATTTGGAATATCTGGGGAAGTTGCTAGCTGGTTCCATTGTGGGTGGAGCTGTAATAAAGTATGGCAGCATAGTTTTTCCTGAGATAACCAGACCCAACATCATACTGGCTCTTATTATGATATTCACTCCTGTCATTCTAGCTACTTTACTTCTGATCAAGCAAAGTCGTGCAAATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD Jacalin

Protein Analysis

144

Amino Acids

15.2

Weight (kDa)

9.72

Isoelectric Point (pI)

54.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013699)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g32840 FvH4_6g32840 FvH4_6g32840 FvH4_6g32840
malus_domestica MD09G1197600.v1.1 MD17G1178500.v1.1
prunus_persica Prupe.3G053600_v2.0.a1
pyrus_communis pycom09g11420 pycom17g18740
rosa_chinensis RchiOBHm_Chr2g0142131
rosa_laevigata RLG00000019948
rosa_roxburghii Rroxscaffold_2G00103640
rosa_rugosa Rorug02G0370700
rosa_samantha Rh2AG422600 Rh2BG432800 Rh2CG409500 Rh2DG442500
rosa_wichuraiana Rw2G034630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AciI CCGC 2 cut(s) 5, 8
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 12
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 2 cut(s) 68, 69
AgeI ACCGGT 1 cut(s) 233
AgsI TTSAA 2 cut(s) 99, 241
AluBI AGCT 6 cut(s) 26, 43, 167, 281, 302, 395
AluI AGCT 6 cut(s) 26, 43, 167, 281, 302, 395
Alw21I GWGCWC 1 cut(s) 169
AoxI GGCC 3 cut(s) 71, 90, 141
ApeKI GCWGC 4 cut(s) 17, 20, 23, 318
ApoI RAATTY 1 cut(s) 208
AsiGI ACCGGT 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 71, 141
AsuNHI GCTAGC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 104
BanII GRGCYC 2 cut(s) 37, 169
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 4 cut(s) 29, 32, 35, 330
BccI CCATC 2 cut(s) 116, 167
BclI TGATCA 1 cut(s) 408
BfaI CTAG 2 cut(s) 278, 392
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 6 cut(s) 6, 9, 18, 21, 24, 319
BlsI GCNGC 6 cut(s) 7, 10, 19, 22, 25, 320
BmgT120I GGNCC 2 cut(s) 71, 141
BmiI GGNNCC 3 cut(s) 34, 106, 286
BmsI GCATC 1 cut(s) 225
BmtI GCTAGC 1 cut(s) 281
BsaWI WCCGGW 2 cut(s) 51, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 69
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 363
BseGI GGATG 3 cut(s) 108, 114, 159
BseLI CCNNNNNNNGG 2 cut(s) 68, 69
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 363
BseRI GAGGAG 2 cut(s) 35, 38
BseXI GCAGC 4 cut(s) 29, 32, 35, 330
BshFI GGCC 3 cut(s) 73, 92, 143
BshNI GGYRCC 1 cut(s) 104
BshTI ACCGGT 1 cut(s) 233
BsiHKAI GWGCWC 1 cut(s) 169
BsiSI CCGG 2 cut(s) 52, 234
BslI CCNNNNNNNGG 2 cut(s) 68, 69
BsnI GGCC 3 cut(s) 73, 92, 143
Bsp1286I GDGCHC 2 cut(s) 37, 169
Bsp143I GATC 1 cut(s) 408
BspACI CCGC 2 cut(s) 5, 8
BspANI GGCC 3 cut(s) 73, 92, 143
BspCNI CTCAG 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 34, 106, 286
BspMAI CTGCAG 1 cut(s) 19
BspOI GCTAGC 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 1 cut(s) 363
BssAI RCCGGY 1 cut(s) 233
BssMI GATC 1 cut(s) 408
Bst6I CTCTTC 3 cut(s) 70, 100, 136
BstC8I GCNNGC 2 cut(s) 75, 279
BstDEI CTNAG 1 cut(s) 333
BstF5I GGATG 3 cut(s) 108, 114, 159
BstKTI GATC 1 cut(s) 411
BstMBI GATC 1 cut(s) 408
BstMWI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 32
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 4 cut(s) 29, 32, 35, 330
BsuRI GGCC 3 cut(s) 73, 92, 143
BtsCI GGATG 3 cut(s) 108, 114, 159
Cac8I GCNNGC 2 cut(s) 75, 279
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 71, 141
Csp6I GTAC 1 cut(s) 55
CspAI ACCGGT 1 cut(s) 233
CviAII CATG 1 cut(s) 88
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 1 cut(s) 333
DpnI GATC 1 cut(s) 410
DpnII GATC 1 cut(s) 408
Eam1104I CTCTTC 3 cut(s) 70, 100, 136
EarI CTCTTC 3 cut(s) 70, 100, 136
Ecl136II GAGCTC 1 cut(s) 167
Eco24I GRGCYC 2 cut(s) 37, 169
Eco53kI GAGCTC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 167
EcoT38I GRGCYC 2 cut(s) 37, 169
FaeI CATG 1 cut(s) 91
FaiI YATR 5 cut(s) 89, 315, 323, 356, 371
FatI CATG 1 cut(s) 87
FbaI TGATCA 1 cut(s) 408
Fnu4HI GCNGC 6 cut(s) 6, 9, 18, 21, 24, 319
FokI GGATG 3 cut(s) 95, 101, 146
FriOI GRGCYC 2 cut(s) 37, 169
Fsp4HI GCNGC 6 cut(s) 6, 9, 18, 21, 24, 319
FspBI CTAG 2 cut(s) 278, 392
GluI GCNGC 6 cut(s) 6, 9, 18, 21, 24, 319
HaeIII GGCC 3 cut(s) 73, 92, 143
HapII CCGG 2 cut(s) 52, 234
Hin1II CATG 1 cut(s) 91
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HpaI GTTAAC 1 cut(s) 223
HpaII CCGG 2 cut(s) 52, 234
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 3 cut(s) 164, 249, 408
Hpy188III TCNNGA 3 cut(s) 30, 170, 332
Hpy8I GTNNAC 1 cut(s) 223
HpyCH4V TGCA 3 cut(s) 17, 77, 425
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 32
HpyF3I CTNAG 1 cut(s) 333
Hsp92II CATG 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 408
KspAI GTTAAC 1 cut(s) 223
Kzo9I GATC 1 cut(s) 408
LmnI GCTCC 3 cut(s) 32, 48, 299
Lsp1109I GCAGC 4 cut(s) 29, 32, 35, 330
LweI GCATC 1 cut(s) 225
MaeI CTAG 2 cut(s) 278, 392
MalI GATC 1 cut(s) 410
MboI GATC 1 cut(s) 408
MboII GAAGA 6 cut(s) 57, 87, 123, 203, 206, 215
MhlI GDGCHC 2 cut(s) 37, 169
MluCI AATT 1 cut(s) 208
MnlI CCTC 5 cut(s) 56, 59, 73, 103, 186
MseI TTAA 1 cut(s) 222
MspI CCGG 2 cut(s) 52, 234
MwoI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 32
NdeII GATC 1 cut(s) 408
NheI GCTAGC 1 cut(s) 277
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 3 cut(s) 34, 106, 286
PinAI ACCGGT 1 cut(s) 233
PkrI GCNGC 6 cut(s) 7, 10, 19, 22, 25, 320
Psp124BI GAGCTC 1 cut(s) 169
PspN4I GGNNCC 3 cut(s) 34, 106, 286
PspPI GGNCC 2 cut(s) 71, 141
PstI CTGCAG 1 cut(s) 19
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SacI GAGCTC 1 cut(s) 169
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 6 cut(s) 6, 9, 18, 21, 24, 319
Sau3AI GATC 1 cut(s) 408
Sau96I GGNCC 2 cut(s) 71, 141
SduI GDGCHC 2 cut(s) 37, 169
SetI ASST 7 cut(s) 28, 45, 106, 169, 283, 304, 397
SfaNI GCATC 1 cut(s) 225
SfcI CTRYAG 1 cut(s) 15
Sse9I AATT 1 cut(s) 208
SsiI CCGC 2 cut(s) 5, 8
SspMI CTAG 2 cut(s) 278, 392
SstI GAGCTC 1 cut(s) 169
TasI AATT 1 cut(s) 208
TauI GCSGC 2 cut(s) 8, 11
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TseI GCWGC 4 cut(s) 17, 20, 23, 318
TspDTI ATGAA 1 cut(s) 76
XapI RAATTY 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XspI CTAG 2 cut(s) 278, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.