Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0012640

Physical Location & Seq

Genomic Coordinates Reverse (-)

5847243 .. 5851097

Gene Structure 3855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G079100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGCCTAAGGTTAGAAGAGCTAGTTCCTTGTCTCTTGATCGATCTAGGGCTTCTCCTTATCCTTGCACCTCTGATGATTCTGAGCCATACAACCTGAAAAATCCCTTGGAAAGCAAGGAGAATGTAAAAGAGTGGGAAGAAGCTAGGTGCCCCATCTGCATTGAACACCCACACAATGCTGTTCTTTTAAAGTGTTCCTCTCATGAGAAGGGCTGCAGGCCTTTCATGTGCAATACAAGCTACCGGCACTCAAATTGCCTTGACCAGTTTTGTAAGTCATCTCTGCCTTGCTGCTCTACACCAATGTTGCAAGAACTTCCTCTCACAATCACAACCTCTCACAGTGCTAACGAGGAACAATCGTCGCTTGGGCAAACCAGCCCCTGTGGGAGTCAATTGGAACCAAAGCCAGTTTGCCCTCTTTGTCGGGGAGAAATCTATGGATATGTTGTTGTTGAGGCTGCTCGTCACTACATGAATTGTAAAGTGAGGAATTGCTCTTCTGAGACATGCGACTTTAACGGGACTTATTCAGAACTGAGGAAGCATGCCAGGTCTCAACACCCTTCTGTCCGGCCATCAGAGGTGGATCCAAATCGACATAGTGATTGGGTAAGGTTGGAGCGTGAAAGGGACTTGGAAGATGTCCTTAGCTTGGTCCAACAAGGACCTGCAGAAGATATTGTTGATGAGGAATCCGGAGAGTTCAGTTCCTGGATGACTAACCTTTTCTCTGCTATGTTTCGTTCTCTTGAGGTCATGCTGGTTACTCGTTTGATGGATTCTTCTAGTGGCTCTTCAAGTGGCAGAGAGCAGACACATAACCGCAGATCAGGGAGAATGCCCAGGGCTCATTATGACAATGATTCCATTTCTGTGACAAGACGGAGCAACATTTTATCAGATAGTACATCTCGTCCCAGAGGTCTGCGTTGGCGAGCACCCAATAATGATGTGGAGATTAGTCGTGCTCCTAGATGGAGCCAAAATTCCTTGTCAGGTGAGACTGGTCATGCTTCTAGATGGAGCAATAATTTCATATCAGAGCCTAATAGCCGTGCCCCTAGATGGAGCAACAACTCTTTATCAGACGAGACTAACAGGGCCCGTAGATGGGGCAACAACTCCTTATCAGAGGAGACCAGCCGTGCCCCTGGTTGGGGCAACAACTCCTTACCAGAGGAGGCCAGCCGTGCCCCCCCTAGATGGAGCAATACTTCTGTACCTGAAAATGCACCCCGTCCCAGGGGGCTGCGATGGCGAAATCAAAGATGGCCAACTTACAACAACAGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1644

Protein Analysis

433

Amino Acids

49.19

Weight (kDa)

8.57

Isoelectric Point (pI)

73.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012640)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30380 FvH4_6g30380
malus_domestica	MD17G1204100.v1.1
prunus_persica	Prupe.3G079100_v2.0.a1 Prupe.3G079100_v2.0.a1 Prupe.3G079100_v2.0.a1
pyrus_communis	pycom17g20770
rosa_chinensis	RchiOBHm_Chr2g0136711
rosa_laevigata	RLG00000019562
rosa_multiflora	Rmu_sc0001299.1_g000027
rosa_roxburghii	Rroxscaffold_2G00108130
rosa_rugosa	Rorug02G0332500 Rorug02G0332600 Rorug02G0332600
rosa_samantha	Rh2AG383400 Rh2BG390100 Rh2CG369900 Rh2DG406700
rosa_wichuraiana	Rw2G031340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	679
AccB1I	GGYRCC	1 cut(s)	147
AccIII	TCCGGA	1 cut(s)	698
AciI	CCGC	2 cut(s)	826, 1294
AclWI	GGATC	2 cut(s)	584, 597
AcoI	YGGCCR	2 cut(s)	575, 1274
AcsI	RAATTY	1 cut(s)	988
AfaI	GTAC	2 cut(s)	910, 1224
AgsI	TTSAA	2 cut(s)	164, 801
AjnI	CCWGG	5 cut(s)	551, 713, 845, 1153, 1244
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	4 cut(s)	20, 143, 240, 654
AluI	AGCT	4 cut(s)	20, 143, 240, 654
Alw21I	GWGCWC	2 cut(s)	943, 973
Alw26I	GTCTC	6 cut(s)	36, 500, 561, 998, 1088, 1133
AlwI	GGATC	2 cut(s)	584, 597
AlwNI	CAGNNNCTG	2 cut(s)	384, 714
Aor13HI	TCCGGA	1 cut(s)	698
AoxI	GGCC	5 cut(s)	218, 575, 1104, 1185, 1274
ApaI	GGGCCC	1 cut(s)	1108
ApeKI	GCWGC	4 cut(s)	213, 291, 461, 1252
ApoI	RAATTY	1 cut(s)	988
AspS9I	GGNCC	4 cut(s)	658, 668, 1104, 1105
AsuHPI	GGTGA	1 cut(s)	1013
AvaII	GGWCC	2 cut(s)	658, 668
AxyI	CCTNAGG	1 cut(s)	6
BaeGI	GKGCMC	5 cut(s)	152, 1063, 1108, 1153, 1198
BaeI	ACNNNNGTAYC	2 cut(s)	1206, 1239
BalI	TGGCCA	1 cut(s)	1276
BamHI	GGATCC	1 cut(s)	589
BanI	GGYRCC	1 cut(s)	147
BanII	GRGCYC	2 cut(s)	853, 1108
Bbv12I	GWGCWC	2 cut(s)	943, 973
BbvI	GCAGC	4 cut(s)	200, 278, 448, 1239
BceAI	ACGGC	3 cut(s)	1041, 1131, 1176
BciT130I	CCWGG	5 cut(s)	553, 715, 847, 1155, 1246
BcoDI	GTCTC	6 cut(s)	36, 500, 561, 998, 1088, 1133
BfaI	CTAG	8 cut(s)	21, 45, 144, 789, 975, 1020, 1065, 1203
BfmI	CTRYAG	2 cut(s)	214, 672
BfuAI	ACCTGC	1 cut(s)	679
BisI	GCNGC	4 cut(s)	214, 292, 462, 1253
BlsI	GCNGC	4 cut(s)	215, 293, 463, 1254
Bme1390I	CCNGG	5 cut(s)	553, 715, 847, 1155, 1246
Bme18I	GGWCC	2 cut(s)	658, 668
BmgT120I	GGNCC	4 cut(s)	658, 668, 1104, 1105
BmiI	GGNNCC	5 cut(s)	149, 402, 591, 983, 1106
BmrFI	CCNGG	5 cut(s)	553, 715, 847, 1155, 1246
Bpu10I	CCTNAGC	1 cut(s)	650
BpuEI	CTTGAG	1 cut(s)	773
Bsa29I	ATCGAT	1 cut(s)	40
BsaBI	GATNNNNATC	1 cut(s)	594
BsaI	GGTCTC	2 cut(s)	561, 1133
BsaJI	CCNNGG	6 cut(s)	105, 845, 846, 1153, 1244, 1245
BsaWI	WCCGGW	1 cut(s)	698
Bse118I	RCCGGY	1 cut(s)	243
Bse1I	ACTGG	3 cut(s)	265, 410, 1012
Bse21I	CCTNAGG	1 cut(s)	6
Bse8I	GATNNNNATC	1 cut(s)	594
BseAI	TCCGGA	1 cut(s)	698
BseBI	CCWGG	5 cut(s)	553, 715, 847, 1155, 1246
BseCI	ATCGAT	1 cut(s)	40
BseDI	CCNNGG	6 cut(s)	105, 845, 846, 1153, 1244, 1245
BseGI	GGATG	1 cut(s)	723
BseJI	GATNNNNATC	1 cut(s)	594
BseMII	CTCAG	3 cut(s)	72, 495, 530
BseNI	ACTGG	3 cut(s)	265, 410, 1012
BseRI	GAGGAG	2 cut(s)	1151, 1196
BseSI	GKGCMC	5 cut(s)	152, 1063, 1108, 1153, 1198
BseXI	GCAGC	4 cut(s)	200, 278, 448, 1239
BshFI	GGCC	5 cut(s)	220, 577, 1106, 1187, 1276
BshNI	GGYRCC	1 cut(s)	147
BshVI	ATCGAT	1 cut(s)	40
BsiHKAI	GWGCWC	2 cut(s)	943, 973
BsiSI	CCGG	3 cut(s)	244, 574, 699
BslFI	GGGAC	4 cut(s)	538, 647, 903, 1227
BsmAI	GTCTC	6 cut(s)	36, 500, 561, 998, 1088, 1133
BsmFI	GGGAC	4 cut(s)	538, 647, 903, 1227
BsmI	GAATGC	1 cut(s)	846
BsnI	GGCC	5 cut(s)	220, 577, 1106, 1187, 1276
Bso31I	GGTCTC	2 cut(s)	561, 1133
Bsp120I	GGGCCC	1 cut(s)	1104
Bsp1286I	GDGCHC	8 cut(s)	152, 853, 943, 973, 1063, 1108, 1153, 1198
Bsp13I	TCCGGA	1 cut(s)	698
Bsp143I	GATC	4 cut(s)	37, 41, 589, 830
BspACI	CCGC	2 cut(s)	826, 1294
BspANI	GGCC	5 cut(s)	220, 577, 1106, 1187, 1276
BspCNI	CTCAG	3 cut(s)	73, 496, 531
BspDI	ATCGAT	1 cut(s)	40
BspEI	TCCGGA	1 cut(s)	698
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	5 cut(s)	149, 402, 591, 983, 1106
BspMAI	CTGCAG	2 cut(s)	218, 676
BspMI	ACCTGC	1 cut(s)	679
BspPI	GGATC	2 cut(s)	584, 597
BspQI	GCTCTTC	3 cut(s)	10, 505, 802
BspT107I	GGYRCC	1 cut(s)	147
BspTNI	GGTCTC	2 cut(s)	561, 1133
BsrFI	RCCGGY	1 cut(s)	243
BsrI	ACTGG	3 cut(s)	265, 410, 1012
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	6 cut(s)	105, 845, 846, 1153, 1244, 1245
BssMI	GATC	4 cut(s)	37, 41, 589, 830
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	5 cut(s)	553, 715, 847, 1155, 1246
Bst4CI	ACNGT	1 cut(s)	344
Bst6I	CTCTTC	3 cut(s)	10, 505, 802
BstC8I	GCNNGC	4 cut(s)	218, 549, 939, 1189
BstDEI	CTNAG	5 cut(s)	6, 81, 504, 539, 650
BstF5I	GGATG	1 cut(s)	723
BstKTI	GATC	4 cut(s)	40, 44, 592, 833
BstMAI	GTCTC	6 cut(s)	36, 500, 561, 998, 1088, 1133
BstMBI	GATC	4 cut(s)	37, 41, 589, 830
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 237, 1193, 1258
BstNI	CCWGG	5 cut(s)	553, 715, 847, 1155, 1246
BstNSI	RCATGY	2 cut(s)	513, 551
BstSCI	CCNGG	5 cut(s)	551, 713, 845, 1153, 1244
BstSFI	CTRYAG	2 cut(s)	214, 672
BstSLI	GKGCMC	5 cut(s)	152, 1063, 1108, 1153, 1198
BstV1I	GCAGC	4 cut(s)	200, 278, 448, 1239
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
Bsu15I	ATCGAT	1 cut(s)	40
Bsu36I	CCTNAGG	1 cut(s)	6
BsuRI	GGCC	5 cut(s)	220, 577, 1106, 1187, 1276
BsuTUI	ATCGAT	1 cut(s)	40
BtgZI	GCGATG	1 cut(s)	1270
BtsCI	GGATG	1 cut(s)	723
BtsIMutI	CAGTG	1 cut(s)	349
BveI	ACCTGC	1 cut(s)	679
Cac8I	GCNNGC	4 cut(s)	218, 549, 939, 1189
CaiI	CAGNNNCTG	2 cut(s)	384, 714
CciI	TCATGA	1 cut(s)	202
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	4 cut(s)	658, 668, 1104, 1105
ClaI	ATCGAT	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	909, 1223
CviAII	CATG	7 cut(s)	203, 226, 475, 510, 548, 760, 1013
CviQI	GTAC	2 cut(s)	909, 1223
DdeI	CTNAG	5 cut(s)	6, 81, 504, 539, 650
DpnI	GATC	4 cut(s)	39, 43, 591, 832
DpnII	GATC	4 cut(s)	37, 41, 589, 830
DraI	TTTAAA	1 cut(s)	189
EaeI	YGGCCR	2 cut(s)	575, 1274
Eam1104I	CTCTTC	3 cut(s)	10, 505, 802
EarI	CTCTTC	3 cut(s)	10, 505, 802
Eco130I	CCWWGG	1 cut(s)	105
Eco147I	AGGCCT	1 cut(s)	220
Eco24I	GRGCYC	2 cut(s)	853, 1108
Eco31I	GGTCTC	2 cut(s)	561, 1133
Eco47I	GGWCC	2 cut(s)	658, 668
Eco81I	CCTNAGG	1 cut(s)	6
EcoO109I	RGGNCCY	2 cut(s)	668, 1104
EcoRII	CCWGG	5 cut(s)	551, 713, 845, 1153, 1244
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	2 cut(s)	853, 1108
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	7 cut(s)	206, 229, 478, 513, 551, 763, 1016
FalI	AAGNNNNNCTT	2 cut(s)	633, 665
FaqI	GGGAC	4 cut(s)	538, 647, 903, 1227
FatI	CATG	7 cut(s)	202, 225, 474, 509, 547, 759, 1012
Fnu4HI	GCNGC	4 cut(s)	214, 292, 462, 1253
FokI	GGATG	1 cut(s)	730
FriOI	GRGCYC	2 cut(s)	853, 1108
Fsp4HI	GCNGC	4 cut(s)	214, 292, 462, 1253
FspBI	CTAG	8 cut(s)	21, 45, 144, 789, 975, 1020, 1065, 1203
GluI	GCNGC	4 cut(s)	214, 292, 462, 1253
HaeIII	GGCC	5 cut(s)	220, 577, 1106, 1187, 1276
HapII	CCGG	3 cut(s)	244, 574, 699
Hin1II	CATG	7 cut(s)	206, 229, 478, 513, 551, 763, 1016
HinfI	GANTC	5 cut(s)	77, 391, 695, 782, 866
HpaII	CCGG	3 cut(s)	244, 574, 699
HphI	GGTGA	1 cut(s)	1013
Hpy188I	TCNGA	9 cut(s)	73, 82, 505, 535, 583, 904, 1045, 1090, 1135
Hpy188III	TCNNGA	5 cut(s)	35, 203, 699, 752, 1020
Hpy99I	CGWCG	1 cut(s)	367
HpyAV	CCTTC	2 cut(s)	202, 576
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4V	TGCA	7 cut(s)	66, 159, 216, 231, 310, 674, 1235
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 237, 1193, 1258
HpyF3I	CTNAG	5 cut(s)	6, 81, 504, 539, 650
Hsp92II	CATG	7 cut(s)	206, 229, 478, 513, 551, 763, 1016
Kpn2I	TCCGGA	1 cut(s)	698
Kzo9I	GATC	4 cut(s)	37, 41, 589, 830
LguI	GCTCTTC	3 cut(s)	10, 505, 802
LmnI	GCTCC	7 cut(s)	622, 888, 976, 981, 1026, 1071, 1209
Lsp1109I	GCAGC	4 cut(s)	200, 278, 448, 1239
MaeI	CTAG	8 cut(s)	21, 45, 144, 789, 975, 1020, 1065, 1203
MaeIII	GTNAC	3 cut(s)	467, 766, 877
MalI	GATC	4 cut(s)	39, 43, 591, 832
MboI	GATC	4 cut(s)	37, 41, 589, 830
MboII	GAAGA	7 cut(s)	27, 149, 492, 653, 689, 777, 789
MfeI	CAATTG	1 cut(s)	395
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	8 cut(s)	152, 853, 943, 973, 1063, 1108, 1153, 1198
MlsI	TGGCCA	1 cut(s)	1276
MluCI	AATT	6 cut(s)	253, 395, 478, 493, 988, 1033
MluNI	TGGCCA	1 cut(s)	1276
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	2 cut(s)	600, 685
Mox20I	TGGCCA	1 cut(s)	1276
MroI	TCCGGA	1 cut(s)	698
MscI	TGGCCA	1 cut(s)	1276
MseI	TTAA	2 cut(s)	188, 519
MslI	CAYNNNNRTG	1 cut(s)	875
Msp20I	TGGCCA	1 cut(s)	1276
MspI	CCGG	3 cut(s)	244, 574, 699
MspR9I	CCNGG	5 cut(s)	553, 715, 847, 1155, 1246
MunI	CAATTG	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	846
MvaI	CCWGG	5 cut(s)	553, 715, 847, 1155, 1246
MwoI	GCNNNNNNNGC	4 cut(s)	156, 237, 1193, 1258
NdeII	GATC	4 cut(s)	37, 41, 589, 830
NlaIII	CATG	7 cut(s)	206, 229, 478, 513, 551, 763, 1016
NlaIV	GGNNCC	5 cut(s)	149, 402, 591, 983, 1106
NmuCI	GTSAC	2 cut(s)	467, 877
NspI	RCATGY	2 cut(s)	513, 551
PaeI	GCATGC	1 cut(s)	551
PagI	TCATGA	1 cut(s)	202
PasI	CCCWGGG	2 cut(s)	846, 1245
PceI	AGGCCT	1 cut(s)	220
PciSI	GCTCTTC	3 cut(s)	10, 505, 802
PctI	GAATGC	1 cut(s)	846
PfeI	GAWTC	4 cut(s)	77, 695, 782, 866
PfoI	TCCNGGA	1 cut(s)	713
PkrI	GCNGC	4 cut(s)	215, 293, 463, 1254
PleI	GAGTC	1 cut(s)	399
PpsI	GAGTC	1 cut(s)	399
PpuMI	RGGWCCY	1 cut(s)	668
Psp5II	RGGWCCY	1 cut(s)	668
Psp6I	CCWGG	5 cut(s)	551, 713, 845, 1153, 1244
PspGI	CCWGG	5 cut(s)	551, 713, 845, 1153, 1244
PspN4I	GGNNCC	5 cut(s)	149, 402, 591, 983, 1106
PspOMI	GGGCCC	1 cut(s)	1104
PspPI	GGNCC	4 cut(s)	658, 668, 1104, 1105
PspPPI	RGGWCCY	1 cut(s)	668
PstI	CTGCAG	2 cut(s)	218, 676
PstNI	CAGNNNCTG	2 cut(s)	384, 714
PsuI	RGATCY	1 cut(s)	589
RsaI	GTAC	2 cut(s)	910, 1224
RsaNI	GTAC	2 cut(s)	909, 1223
RseI	CAYNNNNRTG	1 cut(s)	875
SapI	GCTCTTC	3 cut(s)	10, 505, 802
SaqAI	TTAA	2 cut(s)	188, 519
SatI	GCNGC	4 cut(s)	214, 292, 462, 1253
Sau3AI	GATC	4 cut(s)	37, 41, 589, 830
Sau96I	GGNCC	4 cut(s)	658, 668, 1104, 1105
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	5 cut(s)	553, 715, 847, 1155, 1246
SduI	GDGCHC	8 cut(s)	152, 853, 943, 973, 1063, 1108, 1153, 1198
SfcI	CTRYAG	2 cut(s)	214, 672
SinI	GGWCC	2 cut(s)	658, 668
SmiMI	CAYNNNNRTG	1 cut(s)	875
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
SphI	GCATGC	1 cut(s)	551
Sse9I	AATT	6 cut(s)	253, 395, 478, 493, 988, 1033
SseBI	AGGCCT	1 cut(s)	220
SsiI	CCGC	2 cut(s)	826, 1294
SspMI	CTAG	8 cut(s)	21, 45, 144, 789, 975, 1020, 1065, 1203
StuI	AGGCCT	1 cut(s)	220
StyD4I	CCNGG	5 cut(s)	551, 713, 845, 1153, 1244
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	344
TaqI	TCGA	2 cut(s)	40, 598
TasI	AATT	6 cut(s)	253, 395, 478, 493, 988, 1033
TatI	WGTACW	1 cut(s)	908
TfiI	GAWTC	4 cut(s)	77, 695, 782, 866
Tru1I	TTAA	2 cut(s)	188, 519
Tru9I	TTAA	2 cut(s)	188, 519
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	2 cut(s)	467, 877
TseI	GCWGC	4 cut(s)	213, 291, 461, 1252
Tsp45I	GTSAC	2 cut(s)	467, 877
TspDTI	ATGAA	3 cut(s)	214, 491, 1027
TspGWI	ACGGA	1 cut(s)	901
TspRI	CASTG	1 cut(s)	349
VpaK11BI	GGWCC	2 cut(s)	658, 668
XapI	RAATTY	1 cut(s)	988
XbaI	TCTAGA	1 cut(s)	1019
XceI	RCATGY	2 cut(s)	513, 551
XcmI	CCANNNNNNNNNTGG	1 cut(s)	952
XspI	CTAG	8 cut(s)	21, 45, 144, 789, 975, 1020, 1065, 1203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.