Rw2G031340

Protein of unknown function (DUF1644)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0012640
Physical Location & Seq
Forward (+)
51443210 .. 51446207
2998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G031340.1

Sequence Viewer

Length: 1392 bp
ATGCCCAAAGTCAGACGATCATCTTCCTTGTCTCTTGATCGATCTAGGGCATCACCTTATCCTTGCACCTCTGAGGATGCTGAGCAATACAAGTTGAATAGTCCGTTGGAAAGCACAGAGAATACAAAAGAATGGGAAGATACTAGATGCCCCATCTGCATGGAACACCCACATAATGCTGTTCTTATAAAATGTTCCTCTCATGAGATGGGCTGCAGGCCGTACATGTGCAATACAAGCTACCGGCACTCAAATTGTCTTGACCAGTTTTGTAAGTCTTCTGTTCCTGAGTCCACAACAATGATGTTGCAAGAACTTCCTCTGACACACACAGCCTCTCACGGTTCTAGGGAAGAAGAATCGCTTCCTGGGCAAACCAGCCCTTGTGGGAGTCAGTTGCAACCACATCCAGCTTGCCCTCTTTGTCGGGGAAAGATCTATGGGTATATTGTTGTAGAGGCTGCTCGTCACTTCATGAATTGCAAAGTGAGGAGCTGCTCTTCTGAGACATGCGACTTTAATGGAACTTATTCAGAACTGAGGAAGCATGCGAGGTCTGAACACCCTTATGTCCGGCCATCAGAGGTGGATCCAAATCGTCATCGTGATTGGATGAGATTGGAACGTCAAAGGGACTTGCAAGATGTACTTAGCATAGTCCAAGTAGGGTCTGGAGATGATATTATTCCGGATCCATCAACAGACGGTGGCTGGATGACTTCCCTTTTAAGTGCTATGTTTCGCTCGTTTGAGATTATGATTTTTTCTCAATTGATGGAGAGTTCAAGTGACATGGAACAAACTCATAGTAGAAGATCAGGGAGAATGACTAGGGTCCAGCAAGACAATGACACAATCCCTGCTACTAGAAGGAACAACACTGTATCAGATAGCACATCCCGTCCCAGAGGTCTACGTTGGCGAGCGCCAAATAATAATGTCGAGACAGCTCGTACCTCCAGATTGAGCCACAATTCCTTGTCAGGGGAGACTAGCCATACCTCTAGATGGAGCAACAACTCATTGGAGGAGGCTAGCCGTGCCCCTAGATGGGGTAACTCCTTATCTGAGGAGGGTACTAACCGTGTCCTTAGAAGGGGTAACAACAGCGTATCGGAGACTACCCGTCCCTCCAGATGGGGCAACAACTCTGTGCCAGAGGAGAGTAATCGTGTCCACAGATGGAGTAACAACTCCGTGTCAGAGAGTAATCGTGTCCACAGATGGGGCAACAACTCCTTATCAGAGGAGAGTAGATGGGGCAACAACTCCTTATCGGAAGAGGCTGGGCATGCCCCTAGATGGGGCAATACTTCTGTACCAGAAAGCACACCCCGTCCTCGGAGACTGAGATGGAGAAATCAATGGCCAACGTACAATACCAGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

463

Amino Acids

52.94

Weight (kDa)

8.76

Isoelectric Point (pI)

73.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1644 PF07800 46 - 218 3.6e-67 Protein of unknown function (DUF1644)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 188
AccI GTMKAC 1 cut(s) 913
AccIII TCCGGA 1 cut(s) 688
AclWI GGATC 4 cut(s) 584, 597, 686, 699
AcoI YGGCCR 2 cut(s) 575, 1367
AfaI GTAC 6 cut(s) 224, 648, 955, 1078, 1320, 1376
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 2 cut(s) 97, 786
AhdI GACNNNNNGTC 1 cut(s) 1125
AjnI CCWGG 1 cut(s) 367
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
AluBI AGCT 4 cut(s) 240, 413, 495, 950
AluI AGCT 4 cut(s) 240, 413, 495, 950
Alw26I GTCTC 6 cut(s) 36, 500, 938, 983, 1112, 1339
AlwI GGATC 4 cut(s) 584, 597, 686, 699
Aor13HI TCCGGA 1 cut(s) 688
AoxI GGCC 3 cut(s) 218, 575, 1367
ApeKI GCWGC 3 cut(s) 213, 461, 495
Asp700I GAANNNNTTC 2 cut(s) 363, 529
AspLEI GCGC 1 cut(s) 928
AspS9I GGNCC 1 cut(s) 835
AsuHPI GGTGA 1 cut(s) 45
AsuNHI GCTAGC 1 cut(s) 1034
AvaII GGWCC 1 cut(s) 835
BaeGI GKGCMC 1 cut(s) 1045
BaeI ACNNNNGTAYC 2 cut(s) 1302, 1335
BalI TGGCCA 1 cut(s) 1369
BamHI GGATCC 2 cut(s) 589, 691
BbsI GAAGAC 1 cut(s) 270
BbvI GCAGC 3 cut(s) 200, 448, 482
BceAI ACGGC 2 cut(s) 205, 1023
BciT130I CCWGG 1 cut(s) 369
BcoDI GTCTC 6 cut(s) 36, 500, 938, 983, 1112, 1339
BfmI CTRYAG 1 cut(s) 214
BfoI RGCGCY 1 cut(s) 929
BglII AGATCT 1 cut(s) 435
BisI GCNGC 3 cut(s) 214, 462, 496
BlpI GCTNAGC 1 cut(s) 81
BlsI GCNGC 3 cut(s) 215, 463, 497
Bme1390I CCNGG 1 cut(s) 369
Bme18I GGWCC 1 cut(s) 835
BmeRI GACNNNNNGTC 1 cut(s) 1125
BmgT120I GGNCC 1 cut(s) 835
BmiI GGNNCC 3 cut(s) 591, 693, 836
BmrFI CCNGG 1 cut(s) 369
BmsI GCATC 3 cut(s) 59, 67, 137
BmtI GCTAGC 1 cut(s) 1038
BoxI GACNNNNGTC 1 cut(s) 833
BpiI GAAGAC 1 cut(s) 270
BpmI CTGGAG 3 cut(s) 693, 943, 1117
Bpu1102I GCTNAGC 1 cut(s) 81
Bsa29I ATCGAT 1 cut(s) 40
BsaBI GATNNNNATC 1 cut(s) 594
BsaJI CCNNGG 2 cut(s) 368, 1340
BsaWI WCCGGW 1 cut(s) 688
Bse118I RCCGGY 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 265
Bse8I GATNNNNATC 1 cut(s) 594
BseAI TCCGGA 1 cut(s) 688
BseBI CCWGG 1 cut(s) 369
BseCI ATCGAT 1 cut(s) 40
BseDI CCNNGG 2 cut(s) 368, 1340
BseGI GGATG 5 cut(s) 82, 406, 618, 720, 896
BseJI GATNNNNATC 1 cut(s) 594
BseMII CTCAG 7 cut(s) 63, 72, 279, 495, 530, 1059, 1340
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 5 cut(s) 505, 1043, 1085, 1175, 1262
BseSI GKGCMC 1 cut(s) 1045
BseXI GCAGC 3 cut(s) 200, 448, 482
BseYI CCCAGC 1 cut(s) 1286
BshFI GGCC 3 cut(s) 220, 577, 1369
BshVI ATCGAT 1 cut(s) 40
BsiSI CCGG 3 cut(s) 244, 574, 689
BslFI GGGAC 3 cut(s) 647, 888, 1113
BsmAI GTCTC 6 cut(s) 36, 500, 938, 983, 1112, 1339
BsmFI GGGAC 3 cut(s) 647, 888, 1113
BsnI GGCC 3 cut(s) 220, 577, 1369
Bsp1286I GDGCHC 1 cut(s) 1045
Bsp13I TCCGGA 1 cut(s) 688
Bsp143I GATC 7 cut(s) 17, 37, 41, 435, 589, 691, 815
Bsp1720I GCTNAGC 1 cut(s) 81
BspANI GGCC 3 cut(s) 220, 577, 1369
BspCNI CTCAG 7 cut(s) 64, 73, 280, 496, 531, 1060, 1341
BspDI ATCGAT 1 cut(s) 40
BspEI TCCGGA 1 cut(s) 688
BspHI TCATGA 2 cut(s) 202, 474
BspLI GGNNCC 3 cut(s) 591, 693, 836
BspMAI CTGCAG 1 cut(s) 218
BspOI GCTAGC 1 cut(s) 1038
BspPI GGATC 4 cut(s) 584, 597, 686, 699
BspQI GCTCTTC 1 cut(s) 505
BsrFI RCCGGY 1 cut(s) 243
BsrI ACTGG 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 243
BssECI CCNNGG 2 cut(s) 368, 1340
BssMI GATC 7 cut(s) 17, 37, 41, 435, 589, 691, 815
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 4 cut(s) 344, 707, 883, 1085
Bst6I CTCTTC 2 cut(s) 505, 1275
BstC8I GCNNGC 6 cut(s) 218, 415, 549, 924, 1036, 1293
BstDEI CTNAG 9 cut(s) 72, 81, 288, 504, 539, 650, 1068, 1091, 1349
BstF5I GGATG 5 cut(s) 82, 406, 618, 720, 896
BstH2I RGCGCY 1 cut(s) 929
BstHHI GCGC 1 cut(s) 928
BstKTI GATC 7 cut(s) 20, 40, 44, 438, 592, 694, 818
BstMAI GTCTC 6 cut(s) 36, 500, 938, 983, 1112, 1339
BstMBI GATC 7 cut(s) 17, 37, 41, 435, 589, 691, 815
BstMWI GCNNNNNNNGC 5 cut(s) 156, 237, 370, 1040, 1292
BstNI CCWGG 1 cut(s) 369
BstNSI RCATGY 4 cut(s) 229, 513, 551, 1295
BstPAI GACNNNNGTC 1 cut(s) 833
BstSCI CCNGG 1 cut(s) 367
BstSFI CTRYAG 1 cut(s) 214
BstSLI GKGCMC 1 cut(s) 1045
BstV1I GCAGC 3 cut(s) 200, 448, 482
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 3 cut(s) 435, 589, 691
BstXI CCANNNNNNTGG 1 cut(s) 160
BstYI RGATCY 3 cut(s) 435, 589, 691
Bsu15I ATCGAT 1 cut(s) 40
BsuRI GGCC 3 cut(s) 220, 577, 1369
BsuTUI ATCGAT 1 cut(s) 40
BtsCI GGATG 5 cut(s) 82, 406, 618, 720, 896
BtsIMutI CAGTG 1 cut(s) 879
Cac8I GCNNGC 6 cut(s) 218, 415, 549, 924, 1036, 1293
CciI TCATGA 2 cut(s) 202, 474
CfoI GCGC 1 cut(s) 928
Cfr10I RCCGGY 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 835
ClaI ATCGAT 1 cut(s) 40
Csp6I GTAC 6 cut(s) 223, 647, 954, 1077, 1319, 1375
CviAII CATG 8 cut(s) 160, 203, 226, 475, 510, 548, 793, 1292
CviQI GTAC 6 cut(s) 223, 647, 954, 1077, 1319, 1375
DdeI CTNAG 9 cut(s) 72, 81, 288, 504, 539, 650, 1068, 1091, 1349
DpnI GATC 7 cut(s) 19, 39, 43, 437, 591, 693, 817
DpnII GATC 7 cut(s) 17, 37, 41, 435, 589, 691, 815
DriI GACNNNNNGTC 1 cut(s) 1125
EaeI YGGCCR 2 cut(s) 575, 1367
Eam1104I CTCTTC 2 cut(s) 505, 1275
Eam1105I GACNNNNNGTC 1 cut(s) 1125
EarI CTCTTC 2 cut(s) 505, 1275
Eco47I GGWCC 1 cut(s) 835
EcoRII CCWGG 1 cut(s) 367
FaeI CATG 8 cut(s) 163, 206, 229, 478, 513, 551, 796, 1295
FalI AAGNNNNNCTT 4 cut(s) 348, 380, 633, 665
FaqI GGGAC 3 cut(s) 647, 888, 1113
FatI CATG 8 cut(s) 159, 202, 225, 474, 509, 547, 792, 1291
FblI GTMKAC 1 cut(s) 913
Fnu4HI GCNGC 3 cut(s) 214, 462, 496
FokI GGATG 5 cut(s) 89, 393, 625, 727, 883
Fsp4HI GCNGC 3 cut(s) 214, 462, 496
GlaI GCGC 1 cut(s) 927
GluI GCNGC 3 cut(s) 214, 462, 496
GsaI CCCAGC 1 cut(s) 1290
GsuI CTGGAG 3 cut(s) 693, 943, 1117
HaeII RGCGCY 1 cut(s) 929
HaeIII GGCC 3 cut(s) 220, 577, 1369
HapII CCGG 3 cut(s) 244, 574, 689
HhaI GCGC 1 cut(s) 928
Hin1II CATG 8 cut(s) 163, 206, 229, 478, 513, 551, 796, 1295
Hin6I GCGC 1 cut(s) 926
HinP1I GCGC 1 cut(s) 926
HinfI GANTC 3 cut(s) 290, 359, 391
HpaII CCGG 3 cut(s) 244, 574, 689
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 4 cut(s) 294, 914, 1177, 1219
Hpy8I GTNNAC 4 cut(s) 294, 914, 1177, 1219
HpyAV CCTTC 3 cut(s) 864, 1089, 1380
HpyCH4III ACNGT 4 cut(s) 344, 707, 883, 1085
HpyCH4IV ACGT 3 cut(s) 625, 916, 1373
HpyCH4V TGCA 8 cut(s) 66, 159, 216, 231, 310, 400, 483, 640
HpyF10VI GCNNNNNNNGC 5 cut(s) 156, 237, 370, 1040, 1292
HpyF3I CTNAG 9 cut(s) 72, 81, 288, 504, 539, 650, 1068, 1091, 1349
HpySE526I ACGT 3 cut(s) 625, 916, 1373
Hsp92II CATG 8 cut(s) 163, 206, 229, 478, 513, 551, 796, 1295
HspAI GCGC 1 cut(s) 926
Kpn2I TCCGGA 1 cut(s) 688
Kzo9I GATC 7 cut(s) 17, 37, 41, 435, 589, 691, 815
LguI GCTCTTC 1 cut(s) 505
LmnI GCTCC 2 cut(s) 492, 1011
Lsp1109I GCAGC 3 cut(s) 200, 448, 482
LweI GCATC 3 cut(s) 59, 67, 137
MaeII ACGT 3 cut(s) 625, 916, 1373
MaeIII GTNAC 5 cut(s) 467, 788, 1055, 1100, 1187
MalI GATC 7 cut(s) 19, 39, 43, 437, 591, 693, 817
MboI GATC 7 cut(s) 17, 37, 41, 435, 589, 691, 815
MboII GAAGA 8 cut(s) 15, 149, 270, 365, 368, 492, 825, 1292
MfeI CAATTG 1 cut(s) 770
MflI RGATCY 3 cut(s) 435, 589, 691
MhlI GDGCHC 1 cut(s) 1045
MlsI TGGCCA 1 cut(s) 1369
MluCI AATT 4 cut(s) 253, 478, 770, 973
MluNI TGGCCA 1 cut(s) 1369
MlyI GAGTC 2 cut(s) 299, 400
MmeI TCCRAC 1 cut(s) 87
Mox20I TGGCCA 1 cut(s) 1369
MroI TCCGGA 1 cut(s) 688
MroXI GAANNNNTTC 2 cut(s) 363, 529
MscI TGGCCA 1 cut(s) 1369
MseI TTAA 2 cut(s) 519, 728
MslI CAYNNNNRTG 3 cut(s) 158, 299, 567
Msp20I TGGCCA 1 cut(s) 1369
MspI CCGG 3 cut(s) 244, 574, 689
MspR9I CCNGG 1 cut(s) 369
MunI CAATTG 1 cut(s) 770
MvaI CCWGG 1 cut(s) 369
MwoI GCNNNNNNNGC 5 cut(s) 156, 237, 370, 1040, 1292
NdeII GATC 7 cut(s) 17, 37, 41, 435, 589, 691, 815
NheI GCTAGC 1 cut(s) 1034
NlaIII CATG 8 cut(s) 163, 206, 229, 478, 513, 551, 796, 1295
NlaIV GGNNCC 3 cut(s) 591, 693, 836
NmuCI GTSAC 2 cut(s) 467, 788
NspI RCATGY 4 cut(s) 229, 513, 551, 1295
PaeI GCATGC 2 cut(s) 551, 1295
PagI TCATGA 2 cut(s) 202, 474
PciI ACATGT 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 505
PdmI GAANNNNTTC 2 cut(s) 363, 529
PfeI GAWTC 1 cut(s) 359
PkrI GCNGC 3 cut(s) 215, 463, 497
PleI GAGTC 2 cut(s) 298, 399
PpsI GAGTC 2 cut(s) 298, 399
PscI ACATGT 1 cut(s) 225
PshAI GACNNNNGTC 1 cut(s) 833
PsiI TTATAA 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 367
PspFI CCCAGC 1 cut(s) 1286
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 3 cut(s) 591, 693, 836
PspPI GGNCC 1 cut(s) 835
PstI CTGCAG 1 cut(s) 218
PsuI RGATCY 3 cut(s) 435, 589, 691
RsaI GTAC 6 cut(s) 224, 648, 955, 1078, 1320, 1376
RsaNI GTAC 6 cut(s) 223, 647, 954, 1077, 1319, 1375
RseI CAYNNNNRTG 3 cut(s) 158, 299, 567
SapI GCTCTTC 1 cut(s) 505
SaqAI TTAA 2 cut(s) 519, 728
SatI GCNGC 3 cut(s) 214, 462, 496
Sau3AI GATC 7 cut(s) 17, 37, 41, 435, 589, 691, 815
Sau96I GGNCC 1 cut(s) 835
SchI GAGTC 2 cut(s) 299, 400
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 1 cut(s) 1045
SfaNI GCATC 3 cut(s) 59, 67, 137
SfcI CTRYAG 1 cut(s) 214
SinI GGWCC 1 cut(s) 835
SmiMI CAYNNNNRTG 3 cut(s) 158, 299, 567
SphI GCATGC 2 cut(s) 551, 1295
Sse9I AATT 4 cut(s) 253, 478, 770, 973
StyD4I CCNGG 1 cut(s) 367
TaaI ACNGT 4 cut(s) 344, 707, 883, 1085
TaiI ACGT 3 cut(s) 628, 919, 1376
TaqI TCGA 2 cut(s) 40, 942
TasI AATT 4 cut(s) 253, 478, 770, 973
TatI WGTACW 1 cut(s) 646
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 2 cut(s) 519, 728
Tru9I TTAA 2 cut(s) 519, 728
TscAI CASTG 1 cut(s) 886
TseFI GTSAC 2 cut(s) 467, 788
TseI GCWGC 3 cut(s) 213, 461, 495
Tsp45I GTSAC 2 cut(s) 467, 788
TspDTI ATGAA 2 cut(s) 463, 491
TspGWI ACGGA 2 cut(s) 93, 1186
TspRI CASTG 1 cut(s) 886
VpaK11BI GGWCC 1 cut(s) 835
XbaI TCTAGA 1 cut(s) 1004
XceI RCATGY 4 cut(s) 229, 513, 551, 1295
XcmI CCANNNNNNNNNTGG 1 cut(s) 668
XmiI GTMKAC 1 cut(s) 913
XmnI GAANNNNTTC 2 cut(s) 363, 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.