Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001299.1

Orthogroup ID

OG0012640

Physical Location & Seq

Genomic Coordinates Reverse (-)

147264 .. 148655

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001299.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

atgcccaaagtcagacgatcatcttccttgtctcttgatcgatctagggcatcaccttatccttgcacctctgaggatgctgagcaatacaagttgaatagtccgttagaaagcacagataacgcaaaagaatgggaagatactagatgccccatctgcatggaacacccacataatgctgttcttataaaatgttcctctcatgagatgggctgcaggccgtacatgtgcaatacaagctaccggcactcaaattgtcttgaccagttttgtaagtcttctgttcctgagtccacaacgatgatgttgcaagaacttcctctgacacacacagcctctcacggttctagggaagaagaatcgctgcctgggcaaaccagcccttgtggaagtcagttgcaaccacatccagcttgccctctttgtcggggaaagatctatgggtatattgttgtagaggctgctcgtcacttcatgaattgcaaagtgaggagctgctcttctgagacatgcgactttaatggaacttattcagaactgaggaagcatgcgaggtctgaacacccttatgtccggccatcagaggtggatccaaatcgtcatcgtgattggatgagattggaacgtcaaagggacttgcaagatgtacttagcatagtccaagtagggtctggagatgatattattccggatccatcaacagatggtggctggatgacttcccttttaagtgctatgtttcgctcgtttgagattatgattttttctcaattgatggagagttcaagtgacatggaacaaactcatagtagaagatcagggagaatgactagggtccagcaagacaatgacacaatccctgctgctagaaggaacaacactgtatcagatagcacatcccgtcccagaggtctacgttggcgagcaccaaataataatggcgagacggctcgtacctccagattgagccacaattctttgtcaggggagactagccatacctctagatggagcaacaactcattggtggaggctagccgtgcccctagatggggtaactccttatctgaggagggtactaaccgtgtccttagaaggggtaacaacagcgtatcggagactacccgtccctccagatggggcaacaactctgtgccggaggagagtaatcgtgtccacagatggggtaacaactccatgccagagagtaatcgtgtccacagatggggcaacaactccttatcagaggagagtagatggggcaacaactccttatcggaagaggctgggcatgcctctagatggggcaatacttctgtaccagaaagcacaccccgtcctcggagactgagatggagaaatcaatggccaacgtacaataacagaaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1644

Protein Analysis

463

Amino Acids

52.81

Weight (kDa)

8.86

Isoelectric Point (pI)

72.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012640)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30380 FvH4_6g30380
malus_domestica	MD17G1204100.v1.1
prunus_persica	Prupe.3G079100_v2.0.a1 Prupe.3G079100_v2.0.a1 Prupe.3G079100_v2.0.a1
pyrus_communis	pycom17g20770
rosa_chinensis	RchiOBHm_Chr2g0136711
rosa_laevigata	RLG00000019562
rosa_multiflora	Rmu_sc0001299.1_g000027
rosa_roxburghii	Rroxscaffold_2G00108130
rosa_rugosa	Rorug02G0332500 Rorug02G0332600 Rorug02G0332600
rosa_samantha	Rh2AG383400 Rh2BG390100 Rh2CG369900 Rh2DG406700
rosa_wichuraiana	Rw2G031340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	188
AccI	GTMKAC	1 cut(s)	913
AccIII	TCCGGA	1 cut(s)	688
AclWI	GGATC	4 cut(s)	584, 597, 686, 699
AcoI	YGGCCR	2 cut(s)	575, 1367
AfaI	GTAC	6 cut(s)	224, 648, 955, 1078, 1320, 1376
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	97, 786
AhdI	GACNNNNNGTC	1 cut(s)	1125
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	3 cut(s)	240, 413, 495
AluI	AGCT	3 cut(s)	240, 413, 495
Alw21I	GWGCWC	1 cut(s)	928
Alw26I	GTCTC	6 cut(s)	36, 500, 938, 983, 1112, 1339
AlwI	GGATC	4 cut(s)	584, 597, 686, 699
Aor13HI	TCCGGA	1 cut(s)	688
AoxI	GGCC	3 cut(s)	218, 575, 1367
ApeKI	GCWGC	5 cut(s)	213, 364, 461, 495, 863
Asp700I	GAANNNNTTC	1 cut(s)	529
AspS9I	GGNCC	1 cut(s)	835
AsuHPI	GGTGA	1 cut(s)	45
AsuNHI	GCTAGC	1 cut(s)	1034
AvaII	GGWCC	1 cut(s)	835
BaeGI	GKGCMC	1 cut(s)	1045
BaeI	ACNNNNGTAYC	2 cut(s)	1302, 1335
BalI	TGGCCA	1 cut(s)	1369
BamHI	GGATCC	2 cut(s)	589, 691
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	928
BbvI	GCAGC	5 cut(s)	200, 351, 448, 482, 850
BceAI	ACGGC	3 cut(s)	205, 963, 1023
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BciT130I	CCWGG	1 cut(s)	369
BcoDI	GTCTC	6 cut(s)	36, 500, 938, 983, 1112, 1339
BfmI	CTRYAG	1 cut(s)	214
BglII	AGATCT	1 cut(s)	435
BisI	GCNGC	5 cut(s)	214, 365, 462, 496, 864
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	5 cut(s)	215, 366, 463, 497, 865
Bme1390I	CCNGG	1 cut(s)	369
Bme18I	GGWCC	1 cut(s)	835
BmeRI	GACNNNNNGTC	1 cut(s)	1125
BmgT120I	GGNCC	1 cut(s)	835
BmiI	GGNNCC	3 cut(s)	591, 693, 836
BmrFI	CCNGG	1 cut(s)	369
BmsI	GCATC	3 cut(s)	59, 67, 137
BmtI	GCTAGC	1 cut(s)	1038
BoxI	GACNNNNGTC	1 cut(s)	833
BpiI	GAAGAC	1 cut(s)	270
BpmI	CTGGAG	3 cut(s)	693, 943, 1117
Bpu1102I	GCTNAGC	1 cut(s)	81
Bsa29I	ATCGAT	1 cut(s)	40
BsaBI	GATNNNNATC	1 cut(s)	594
BsaJI	CCNNGG	2 cut(s)	368, 1340
BsaWI	WCCGGW	1 cut(s)	688
Bse118I	RCCGGY	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	265
Bse8I	GATNNNNATC	1 cut(s)	594
BseAI	TCCGGA	1 cut(s)	688
BseBI	CCWGG	1 cut(s)	369
BseCI	ATCGAT	1 cut(s)	40
BseDI	CCNNGG	2 cut(s)	368, 1340
BseGI	GGATG	5 cut(s)	82, 406, 618, 720, 896
BseJI	GATNNNNATC	1 cut(s)	594
BseMII	CTCAG	7 cut(s)	63, 72, 279, 495, 530, 1059, 1340
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	4 cut(s)	505, 1085, 1175, 1262
BseSI	GKGCMC	1 cut(s)	1045
BseXI	GCAGC	5 cut(s)	200, 351, 448, 482, 850
BseYI	CCCAGC	1 cut(s)	1286
BshFI	GGCC	3 cut(s)	220, 577, 1369
BshVI	ATCGAT	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	928
BsiSI	CCGG	4 cut(s)	244, 574, 689, 1157
BslFI	GGGAC	3 cut(s)	647, 888, 1113
BsmAI	GTCTC	6 cut(s)	36, 500, 938, 983, 1112, 1339
BsmBI	CGTCTC	1 cut(s)	938
BsmFI	GGGAC	3 cut(s)	647, 888, 1113
BsnI	GGCC	3 cut(s)	220, 577, 1369
Bsp1286I	GDGCHC	2 cut(s)	928, 1045
Bsp13I	TCCGGA	1 cut(s)	688
Bsp143I	GATC	7 cut(s)	17, 37, 41, 435, 589, 691, 815
Bsp1720I	GCTNAGC	1 cut(s)	81
BspANI	GGCC	3 cut(s)	220, 577, 1369
BspCNI	CTCAG	7 cut(s)	64, 73, 280, 496, 531, 1060, 1341
BspDI	ATCGAT	1 cut(s)	40
BspEI	TCCGGA	1 cut(s)	688
BspHI	TCATGA	2 cut(s)	202, 474
BspLI	GGNNCC	3 cut(s)	591, 693, 836
BspMAI	CTGCAG	1 cut(s)	218
BspOI	GCTAGC	1 cut(s)	1038
BspPI	GGATC	4 cut(s)	584, 597, 686, 699
BspQI	GCTCTTC	1 cut(s)	505
BsrFI	RCCGGY	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	368, 1340
BssMI	GATC	7 cut(s)	17, 37, 41, 435, 589, 691, 815
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	3 cut(s)	344, 883, 1085
Bst6I	CTCTTC	2 cut(s)	505, 1275
BstC8I	GCNNGC	6 cut(s)	218, 415, 549, 924, 1036, 1293
BstDEI	CTNAG	9 cut(s)	72, 81, 288, 504, 539, 650, 1068, 1091, 1349
BstF5I	GGATG	5 cut(s)	82, 406, 618, 720, 896
BstKTI	GATC	7 cut(s)	20, 40, 44, 438, 592, 694, 818
BstMAI	GTCTC	6 cut(s)	36, 500, 938, 983, 1112, 1339
BstMBI	GATC	7 cut(s)	17, 37, 41, 435, 589, 691, 815
BstMWI	GCNNNNNNNGC	5 cut(s)	156, 237, 370, 1040, 1292
BstNI	CCWGG	1 cut(s)	369
BstNSI	RCATGY	4 cut(s)	229, 513, 551, 1295
BstPAI	GACNNNNGTC	1 cut(s)	833
BstSCI	CCNGG	1 cut(s)	367
BstSFI	CTRYAG	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	1045
BstV1I	GCAGC	5 cut(s)	200, 351, 448, 482, 850
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	3 cut(s)	435, 589, 691
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	3 cut(s)	435, 589, 691
Bsu15I	ATCGAT	1 cut(s)	40
BsuRI	GGCC	3 cut(s)	220, 577, 1369
BsuTUI	ATCGAT	1 cut(s)	40
BtsCI	GGATG	5 cut(s)	82, 406, 618, 720, 896
BtsIMutI	CAGTG	1 cut(s)	879
Cac8I	GCNNGC	6 cut(s)	218, 415, 549, 924, 1036, 1293
CciI	TCATGA	2 cut(s)	202, 474
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	835
ClaI	ATCGAT	1 cut(s)	40
Csp6I	GTAC	6 cut(s)	223, 647, 954, 1077, 1319, 1375
CviAII	CATG	9 cut(s)	160, 203, 226, 475, 510, 548, 793, 1198, 1292
CviQI	GTAC	6 cut(s)	223, 647, 954, 1077, 1319, 1375
DdeI	CTNAG	9 cut(s)	72, 81, 288, 504, 539, 650, 1068, 1091, 1349
DpnI	GATC	7 cut(s)	19, 39, 43, 437, 591, 693, 817
DpnII	GATC	7 cut(s)	17, 37, 41, 435, 589, 691, 815
DriI	GACNNNNNGTC	1 cut(s)	1125
EaeI	YGGCCR	2 cut(s)	575, 1367
Eam1104I	CTCTTC	2 cut(s)	505, 1275
Eam1105I	GACNNNNNGTC	1 cut(s)	1125
EarI	CTCTTC	2 cut(s)	505, 1275
Eco47I	GGWCC	1 cut(s)	835
EcoRII	CCWGG	1 cut(s)	367
Esp3I	CGTCTC	1 cut(s)	938
FaeI	CATG	9 cut(s)	163, 206, 229, 478, 513, 551, 796, 1201, 1295
FalI	AAGNNNNNCTT	2 cut(s)	633, 665
FaqI	GGGAC	3 cut(s)	647, 888, 1113
FatI	CATG	9 cut(s)	159, 202, 225, 474, 509, 547, 792, 1197, 1291
FblI	GTMKAC	1 cut(s)	913
Fnu4HI	GCNGC	5 cut(s)	214, 365, 462, 496, 864
FokI	GGATG	5 cut(s)	89, 393, 625, 727, 883
Fsp4HI	GCNGC	5 cut(s)	214, 365, 462, 496, 864
GluI	GCNGC	5 cut(s)	214, 365, 462, 496, 864
GsaI	CCCAGC	1 cut(s)	1290
GsuI	CTGGAG	3 cut(s)	693, 943, 1117
HaeIII	GGCC	3 cut(s)	220, 577, 1369
HapII	CCGG	4 cut(s)	244, 574, 689, 1157
Hin1II	CATG	9 cut(s)	163, 206, 229, 478, 513, 551, 796, 1201, 1295
HinfI	GANTC	2 cut(s)	290, 359
HpaII	CCGG	4 cut(s)	244, 574, 689, 1157
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	4 cut(s)	294, 914, 1177, 1219
Hpy8I	GTNNAC	4 cut(s)	294, 914, 1177, 1219
HpyAV	CCTTC	3 cut(s)	864, 1089, 1380
HpyCH4III	ACNGT	3 cut(s)	344, 883, 1085
HpyCH4IV	ACGT	3 cut(s)	625, 916, 1373
HpyCH4V	TGCA	8 cut(s)	66, 159, 216, 231, 310, 400, 483, 640
HpyF10VI	GCNNNNNNNGC	5 cut(s)	156, 237, 370, 1040, 1292
HpyF3I	CTNAG	9 cut(s)	72, 81, 288, 504, 539, 650, 1068, 1091, 1349
HpySE526I	ACGT	3 cut(s)	625, 916, 1373
Hsp92II	CATG	9 cut(s)	163, 206, 229, 478, 513, 551, 796, 1201, 1295
Kpn2I	TCCGGA	1 cut(s)	688
Kzo9I	GATC	7 cut(s)	17, 37, 41, 435, 589, 691, 815
LguI	GCTCTTC	1 cut(s)	505
LmnI	GCTCC	2 cut(s)	492, 1011
Lsp1109I	GCAGC	5 cut(s)	200, 351, 448, 482, 850
LweI	GCATC	3 cut(s)	59, 67, 137
MaeII	ACGT	3 cut(s)	625, 916, 1373
MaeIII	GTNAC	5 cut(s)	467, 788, 1055, 1100, 1187
MalI	GATC	7 cut(s)	19, 39, 43, 437, 591, 693, 817
MboI	GATC	7 cut(s)	17, 37, 41, 435, 589, 691, 815
MboII	GAAGA	8 cut(s)	15, 149, 270, 365, 368, 492, 825, 1292
MfeI	CAATTG	1 cut(s)	770
MflI	RGATCY	3 cut(s)	435, 589, 691
MhlI	GDGCHC	2 cut(s)	928, 1045
MlsI	TGGCCA	1 cut(s)	1369
MluCI	AATT	4 cut(s)	253, 478, 770, 973
MluNI	TGGCCA	1 cut(s)	1369
MlyI	GAGTC	1 cut(s)	299
Mox20I	TGGCCA	1 cut(s)	1369
MroI	TCCGGA	1 cut(s)	688
MroXI	GAANNNNTTC	1 cut(s)	529
MscI	TGGCCA	1 cut(s)	1369
MseI	TTAA	2 cut(s)	519, 728
MslI	CAYNNNNRTG	3 cut(s)	158, 299, 567
Msp20I	TGGCCA	1 cut(s)	1369
MspI	CCGG	4 cut(s)	244, 574, 689, 1157
MspR9I	CCNGG	1 cut(s)	369
MunI	CAATTG	1 cut(s)	770
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	5 cut(s)	156, 237, 370, 1040, 1292
NdeII	GATC	7 cut(s)	17, 37, 41, 435, 589, 691, 815
NheI	GCTAGC	1 cut(s)	1034
NlaIII	CATG	9 cut(s)	163, 206, 229, 478, 513, 551, 796, 1201, 1295
NlaIV	GGNNCC	3 cut(s)	591, 693, 836
NmuCI	GTSAC	2 cut(s)	467, 788
NspI	RCATGY	4 cut(s)	229, 513, 551, 1295
PaeI	GCATGC	2 cut(s)	551, 1295
PagI	TCATGA	2 cut(s)	202, 474
PciI	ACATGT	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	529
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	5 cut(s)	215, 366, 463, 497, 865
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PscI	ACATGT	1 cut(s)	225
PshAI	GACNNNNGTC	1 cut(s)	833
PsiI	TTATAA	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	1286
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	3 cut(s)	591, 693, 836
PspPI	GGNCC	1 cut(s)	835
PstI	CTGCAG	1 cut(s)	218
PsuI	RGATCY	3 cut(s)	435, 589, 691
RsaI	GTAC	6 cut(s)	224, 648, 955, 1078, 1320, 1376
RsaNI	GTAC	6 cut(s)	223, 647, 954, 1077, 1319, 1375
RseI	CAYNNNNRTG	3 cut(s)	158, 299, 567
SapI	GCTCTTC	1 cut(s)	505
SaqAI	TTAA	2 cut(s)	519, 728
SatI	GCNGC	5 cut(s)	214, 365, 462, 496, 864
Sau3AI	GATC	7 cut(s)	17, 37, 41, 435, 589, 691, 815
Sau96I	GGNCC	1 cut(s)	835
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	369
SduI	GDGCHC	2 cut(s)	928, 1045
SfaNI	GCATC	3 cut(s)	59, 67, 137
SfcI	CTRYAG	1 cut(s)	214
SinI	GGWCC	1 cut(s)	835
SmiMI	CAYNNNNRTG	3 cut(s)	158, 299, 567
SphI	GCATGC	2 cut(s)	551, 1295
Sse9I	AATT	4 cut(s)	253, 478, 770, 973
StyD4I	CCNGG	1 cut(s)	367
TaaI	ACNGT	3 cut(s)	344, 883, 1085
TaiI	ACGT	3 cut(s)	628, 919, 1376
TaqI	TCGA	1 cut(s)	40
TasI	AATT	4 cut(s)	253, 478, 770, 973
TatI	WGTACW	1 cut(s)	646
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	2 cut(s)	519, 728
Tru9I	TTAA	2 cut(s)	519, 728
TscAI	CASTG	1 cut(s)	886
TseFI	GTSAC	2 cut(s)	467, 788
TseI	GCWGC	5 cut(s)	213, 364, 461, 495, 863
Tsp45I	GTSAC	2 cut(s)	467, 788
TspDTI	ATGAA	2 cut(s)	463, 491
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	886
VpaK11BI	GGWCC	1 cut(s)	835
XbaI	TCTAGA	2 cut(s)	1004, 1298
XceI	RCATGY	4 cut(s)	229, 513, 551, 1295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	668
XmiI	GTMKAC	1 cut(s)	913
XmnI	GAANNNNTTC	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.