Rroxscaffold_2G00108130

Protein of unknown function (DUF1644)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012640
Physical Location & Seq
Reverse (-)
32114594 .. 32117496
2903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00108130.1

Sequence Viewer

Length: 942 bp
ATGTGTGGAAGGCGCTGTCTCTCTCGCTATATAGGCAGCTACGACCCACGCCCTTGTTTCCATTTTGCTCTCTCTCAAAGTTGTCCTCCCCACAACAACAACAGAGACCTCTCCTCCGGTGTTGAAAAAGGTACTTTTAGTATTCTCTGGTGCTATCTTAACTTCAAAATGCCCAAAGTCAGACGATCATCTTCCTTGTCTCTTGATCGATCTAAGGCATCACCTTATCCTTGCACCTCTGAGGATGCTGAGCAATACAAGTTGAATAGTCCGTTAGAAAGCACAGAGAATGCAAAAGAATGGGAAGATTCTAGATGCCCCATCTGCATGGAACACCCACATAATGCTGTTCTTATAAAATGTTCCTCTCATGAGATGGGCTGCAGGCCGTACATGTGCAATACAAGCTACCGGCACTCAAATTGTCTTGACCAGTTTTGTAAGTCTTCTGTTCCTGAGTCCACAACAATGATGTTGCAAGAACTTCCTCTGACACACACAGCCTCTCACGGTTCTAGGGAAGAAGAATTGCTGCCTGGGCAAACCAGCCCTTGTGGGAGTCAGTTACAACCACATCCAGCTTGCCCTCTTTGTCGGGGAAGGATCTATGGGTATATTGTTGTAGAGGCTGCTCGTCACTTCATGAATTGCAAAGTGAGGAGCTGCTCTTCTGAGACATGCGACTTTAATGGAACTTATTCAGAACTGAGGAAGCATGCGAGGTCTGAACACCCTTATGTCCGGCCATCAGAGGTGGATCCAAATCGTCATCGTGATTGGATGAGATTGGAACGTCAAAGGGACTTGCAAGATGTACTTAGCATAGTCCAAGTAGGGTCTGGAGATGATATTATTCCGGATCCATCAACAGACGGTGGCTGGATGACTTCCCTTTTAAGTGCTATGTTTCGCTCGTTTGAGATTATGATTTTTCTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1644

Protein Analysis

313

Amino Acids

35.67

Weight (kDa)

6.87

Isoelectric Point (pI)

65.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1644 PF07800 102 - 274 3.9e-67 Protein of unknown function (DUF1644)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 356
AccIII TCCGGA 1 cut(s) 856
AclWI GGATC 5 cut(s) 611, 752, 765, 854, 867
AcoI YGGCCR 1 cut(s) 743
AfaI GTAC 3 cut(s) 133, 392, 816
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 3 cut(s) 125, 166, 265
AjnI CCWGG 1 cut(s) 535
AluBI AGCT 4 cut(s) 39, 408, 581, 663
AluI AGCT 4 cut(s) 39, 408, 581, 663
Alw26I GTCTC 4 cut(s) 23, 99, 204, 668
AlwI GGATC 5 cut(s) 611, 752, 765, 854, 867
Aor13HI TCCGGA 1 cut(s) 856
AoxI GGCC 2 cut(s) 386, 743
ApeKI GCWGC 5 cut(s) 36, 381, 532, 629, 663
Asp700I GAANNNNTTC 1 cut(s) 697
AspLEI GCGC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 213
BamHI GGATCC 2 cut(s) 757, 859
BbsI GAAGAC 1 cut(s) 438
BbvI GCAGC 5 cut(s) 48, 368, 519, 616, 650
BccI CCATC 4 cut(s) 329, 370, 754, 871
BceAI ACGGC 1 cut(s) 373
BciT130I CCWGG 1 cut(s) 537
BcoDI GTCTC 4 cut(s) 23, 99, 204, 668
BfaI CTAG 2 cut(s) 312, 516
BfmI CTRYAG 1 cut(s) 382
BfoI RGCGCY 1 cut(s) 16
BisI GCNGC 5 cut(s) 37, 382, 533, 630, 664
BlpI GCTNAGC 1 cut(s) 249
BlsI GCNGC 5 cut(s) 38, 383, 534, 631, 665
Bme1390I CCNGG 1 cut(s) 537
BmiI GGNNCC 2 cut(s) 759, 861
BmrFI CCNGG 1 cut(s) 537
BmsI GCATC 3 cut(s) 227, 235, 305
BpiI GAAGAC 1 cut(s) 438
BpmI CTGGAG 1 cut(s) 861
Bpu1102I GCTNAGC 1 cut(s) 249
Bsa29I ATCGAT 1 cut(s) 208
BsaBI GATNNNNATC 1 cut(s) 762
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 536
BsaWI WCCGGW 2 cut(s) 116, 856
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bse118I RCCGGY 1 cut(s) 411
Bse1I ACTGG 1 cut(s) 433
Bse8I GATNNNNATC 1 cut(s) 762
BseAI TCCGGA 1 cut(s) 856
BseBI CCWGG 1 cut(s) 537
BseCI ATCGAT 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 536
BseGI GGATG 4 cut(s) 250, 574, 786, 888
BseJI GATNNNNATC 1 cut(s) 762
BseMII CTCAG 5 cut(s) 231, 240, 447, 663, 698
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 2 cut(s) 103, 673
BseXI GCAGC 5 cut(s) 48, 368, 519, 616, 650
BshFI GGCC 2 cut(s) 388, 745
BshVI ATCGAT 1 cut(s) 208
BsiSI CCGG 4 cut(s) 117, 412, 742, 857
BslFI GGGAC 1 cut(s) 815
BsmAI GTCTC 4 cut(s) 23, 99, 204, 668
BsmFI GGGAC 1 cut(s) 815
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 2 cut(s) 388, 745
Bso31I GGTCTC 1 cut(s) 99
Bsp13I TCCGGA 1 cut(s) 856
Bsp143I GATC 6 cut(s) 185, 205, 209, 603, 757, 859
Bsp1720I GCTNAGC 1 cut(s) 249
BspANI GGCC 2 cut(s) 388, 745
BspCNI CTCAG 5 cut(s) 232, 241, 448, 664, 699
BspDI ATCGAT 1 cut(s) 208
BspEI TCCGGA 1 cut(s) 856
BspHI TCATGA 2 cut(s) 370, 642
BspLI GGNNCC 2 cut(s) 759, 861
BspMAI CTGCAG 1 cut(s) 386
BspPI GGATC 5 cut(s) 611, 752, 765, 854, 867
BspQI GCTCTTC 1 cut(s) 673
BspTNI GGTCTC 1 cut(s) 99
BsrFI RCCGGY 1 cut(s) 411
BsrI ACTGG 1 cut(s) 433
BssAI RCCGGY 1 cut(s) 411
BssECI CCNNGG 1 cut(s) 536
BssMI GATC 6 cut(s) 185, 205, 209, 603, 757, 859
Bst2UI CCWGG 1 cut(s) 537
Bst4CI ACNGT 2 cut(s) 512, 875
Bst6I CTCTTC 1 cut(s) 673
BstC8I GCNNGC 3 cut(s) 386, 583, 717
BstDEI CTNAG 7 cut(s) 213, 240, 249, 456, 672, 707, 818
BstF5I GGATG 4 cut(s) 250, 574, 786, 888
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 6 cut(s) 188, 208, 212, 606, 760, 862
BstMAI GTCTC 4 cut(s) 23, 99, 204, 668
BstMBI GATC 6 cut(s) 185, 205, 209, 603, 757, 859
BstMWI GCNNNNNNNGC 4 cut(s) 33, 324, 405, 538
BstNI CCWGG 1 cut(s) 537
BstNSI RCATGY 3 cut(s) 397, 681, 719
BstSCI CCNGG 1 cut(s) 535
BstSFI CTRYAG 1 cut(s) 382
BstV1I GCAGC 5 cut(s) 48, 368, 519, 616, 650
BstV2I GAAGAC 1 cut(s) 438
BstX2I RGATCY 3 cut(s) 603, 757, 859
BstXI CCANNNNNNTGG 1 cut(s) 328
BstYI RGATCY 3 cut(s) 603, 757, 859
Bsu15I ATCGAT 1 cut(s) 208
BsuRI GGCC 2 cut(s) 388, 745
BsuTUI ATCGAT 1 cut(s) 208
BtsCI GGATG 4 cut(s) 250, 574, 786, 888
Cac8I GCNNGC 3 cut(s) 386, 583, 717
CciI TCATGA 2 cut(s) 370, 642
CfoI GCGC 1 cut(s) 15
Cfr10I RCCGGY 1 cut(s) 411
ClaI ATCGAT 1 cut(s) 208
Csp6I GTAC 3 cut(s) 132, 391, 815
CviAII CATG 6 cut(s) 328, 371, 394, 643, 678, 716
CviQI GTAC 3 cut(s) 132, 391, 815
DdeI CTNAG 7 cut(s) 213, 240, 249, 456, 672, 707, 818
DpnI GATC 6 cut(s) 187, 207, 211, 605, 759, 861
DpnII GATC 6 cut(s) 185, 205, 209, 603, 757, 859
EaeI YGGCCR 1 cut(s) 743
Eam1104I CTCTTC 1 cut(s) 673
EarI CTCTTC 1 cut(s) 673
Eco31I GGTCTC 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 535
FaeI CATG 6 cut(s) 331, 374, 397, 646, 681, 719
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FaqI GGGAC 1 cut(s) 815
FatI CATG 6 cut(s) 327, 370, 393, 642, 677, 715
Fnu4HI GCNGC 5 cut(s) 37, 382, 533, 630, 664
FokI GGATG 4 cut(s) 257, 561, 793, 895
Fsp4HI GCNGC 5 cut(s) 37, 382, 533, 630, 664
FspBI CTAG 2 cut(s) 312, 516
GlaI GCGC 1 cut(s) 14
GluI GCNGC 5 cut(s) 37, 382, 533, 630, 664
GsuI CTGGAG 1 cut(s) 861
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 2 cut(s) 388, 745
HapII CCGG 4 cut(s) 117, 412, 742, 857
HhaI GCGC 1 cut(s) 15
Hin1II CATG 6 cut(s) 331, 374, 397, 646, 681, 719
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HinfI GANTC 3 cut(s) 308, 458, 559
HpaII CCGG 4 cut(s) 117, 412, 742, 857
HphI GGTGA 1 cut(s) 213
Hpy166II GTNNAC 1 cut(s) 462
Hpy188I TCNGA 7 cut(s) 182, 241, 492, 673, 703, 727, 751
Hpy188III TCNNGA 9 cut(s) 203, 312, 371, 428, 455, 643, 773, 840, 857
Hpy8I GTNNAC 1 cut(s) 462
HpyAV CCTTC 2 cut(s) 3, 594
HpyCH4III ACNGT 2 cut(s) 512, 875
HpyCH4IV ACGT 1 cut(s) 793
HpyCH4V TGCA 8 cut(s) 234, 293, 327, 384, 399, 478, 651, 808
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 324, 405, 538
HpyF3I CTNAG 7 cut(s) 213, 240, 249, 456, 672, 707, 818
HpySE526I ACGT 1 cut(s) 793
Hsp92II CATG 6 cut(s) 331, 374, 397, 646, 681, 719
HspAI GCGC 1 cut(s) 13
Kpn2I TCCGGA 1 cut(s) 856
Kzo9I GATC 6 cut(s) 185, 205, 209, 603, 757, 859
LguI GCTCTTC 1 cut(s) 673
LmnI GCTCC 1 cut(s) 660
Lsp1109I GCAGC 5 cut(s) 48, 368, 519, 616, 650
LweI GCATC 3 cut(s) 227, 235, 305
MaeI CTAG 2 cut(s) 312, 516
MaeII ACGT 1 cut(s) 793
MaeIII GTNAC 2 cut(s) 564, 635
MalI GATC 6 cut(s) 187, 207, 211, 605, 759, 861
MboI GATC 6 cut(s) 185, 205, 209, 603, 757, 859
MboII GAAGA 6 cut(s) 183, 317, 438, 533, 536, 660
MfeI CAATTG 1 cut(s) 937
MflI RGATCY 3 cut(s) 603, 757, 859
MluCI AATT 4 cut(s) 421, 527, 646, 937
MlyI GAGTC 2 cut(s) 467, 568
MroI TCCGGA 1 cut(s) 856
MroXI GAANNNNTTC 1 cut(s) 697
MseI TTAA 3 cut(s) 159, 687, 896
MslI CAYNNNNRTG 3 cut(s) 326, 467, 735
MspI CCGG 4 cut(s) 117, 412, 742, 857
MspR9I CCNGG 1 cut(s) 537
MunI CAATTG 1 cut(s) 937
Mva1269I GAATGC 1 cut(s) 295
MvaI CCWGG 1 cut(s) 537
MwoI GCNNNNNNNGC 4 cut(s) 33, 324, 405, 538
NdeII GATC 6 cut(s) 185, 205, 209, 603, 757, 859
NlaIII CATG 6 cut(s) 331, 374, 397, 646, 681, 719
NlaIV GGNNCC 2 cut(s) 759, 861
NmuCI GTSAC 1 cut(s) 635
NspI RCATGY 3 cut(s) 397, 681, 719
PaeI GCATGC 1 cut(s) 719
PagI TCATGA 2 cut(s) 370, 642
PciI ACATGT 1 cut(s) 393
PciSI GCTCTTC 1 cut(s) 673
PctI GAATGC 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 697
PfeI GAWTC 1 cut(s) 308
PkrI GCNGC 5 cut(s) 38, 383, 534, 631, 665
PleI GAGTC 2 cut(s) 466, 567
PpsI GAGTC 2 cut(s) 466, 567
PscI ACATGT 1 cut(s) 393
PsiI TTATAA 1 cut(s) 356
Psp6I CCWGG 1 cut(s) 535
PspGI CCWGG 1 cut(s) 535
PspN4I GGNNCC 2 cut(s) 759, 861
PstI CTGCAG 1 cut(s) 386
PsuI RGATCY 3 cut(s) 603, 757, 859
RsaI GTAC 3 cut(s) 133, 392, 816
RsaNI GTAC 3 cut(s) 132, 391, 815
RseI CAYNNNNRTG 3 cut(s) 326, 467, 735
SapI GCTCTTC 1 cut(s) 673
SaqAI TTAA 3 cut(s) 159, 687, 896
SatI GCNGC 5 cut(s) 37, 382, 533, 630, 664
Sau3AI GATC 6 cut(s) 185, 205, 209, 603, 757, 859
SchI GAGTC 2 cut(s) 467, 568
ScrFI CCNGG 1 cut(s) 537
SfaNI GCATC 3 cut(s) 227, 235, 305
SfcI CTRYAG 1 cut(s) 382
SmiMI CAYNNNNRTG 3 cut(s) 326, 467, 735
SphI GCATGC 1 cut(s) 719
Sse9I AATT 4 cut(s) 421, 527, 646, 937
SspMI CTAG 2 cut(s) 312, 516
StyD4I CCNGG 1 cut(s) 535
TaaI ACNGT 2 cut(s) 512, 875
TaiI ACGT 1 cut(s) 796
TaqI TCGA 1 cut(s) 208
TasI AATT 4 cut(s) 421, 527, 646, 937
TatI WGTACW 1 cut(s) 814
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 3 cut(s) 159, 687, 896
Tru9I TTAA 3 cut(s) 159, 687, 896
TseFI GTSAC 1 cut(s) 635
TseI GCWGC 5 cut(s) 36, 381, 532, 629, 663
Tsp45I GTSAC 1 cut(s) 635
TspDTI ATGAA 2 cut(s) 631, 659
TspGWI ACGGA 1 cut(s) 261
XbaI TCTAGA 1 cut(s) 311
XceI RCATGY 3 cut(s) 397, 681, 719
XcmI CCANNNNNNNNNTGG 1 cut(s) 836
XmnI GAANNNNTTC 1 cut(s) 697
XspI CTAG 2 cut(s) 312, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.