Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009811

Physical Location & Seq

Genomic Coordinates Forward (+)

6243072 .. 6248779

Gene Structure 5708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G084700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTGTTTTTACCTTCTTTTTTTCCCTTCACCGGGCTTGGTTGCTGCCGTTGGCACTTTGACGGTGGATGCCTACGCCACTTCTTATTACAGCTGGTCTCACTCCAAGAACAATAACTCTCAGCCTACAGAGAGTGGTGGTGATGTGGAAGAGCACGGGCATGTCCTGGCAACCGGGGGTCATATTGGCCACTGCCGTGCCTTAAGGAGAACCCGAAAACCAGCTTCGGTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGTTGAAGGGGTGGTACCAGCTTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

99

Amino Acids

11.14

Weight (kDa)

6.51

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05300 AT1G05300 AT2G32270
fragaria_vesca	FvH4_6g39460
malus_domestica	MD09G1140300.v1.1 MD09G1140500.v1.1
prunus_persica	Prupe.3G084700_v2.0.a1 Prupe.3G185300_v2.0.a1 Prupe.3G185500_v2.0.a1
pyrus_communis	pycom09g06120
rosa_chinensis	RchiOBHm_Chr2g0153481
rosa_laevigata	RLG00000020700
rosa_multiflora	Rmu_sc0003810.1_g000011 Rmu_sc0042825.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095000
rosa_rugosa	Rorug02G0438300
rosa_samantha	Rh2AG502300 Rh2BG513100 Rh2CG488200 Rh2DG524700
rosa_wichuraiana	Rw2G041160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	282
AccB1I	GGYRCC	1 cut(s)	282
AcoI	YGGCCR	1 cut(s)	187
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	2 cut(s)	31, 32
AflII	CTTAAG	1 cut(s)	202
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	165
AleI	CACNNNNGTG	1 cut(s)	195
AluBI	AGCT	3 cut(s)	93, 224, 289
AluI	AGCT	3 cut(s)	93, 224, 289
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	102
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	44
Asp718I	GGTACC	1 cut(s)	282
AsuC2I	CCSGG	2 cut(s)	33, 175
AsuHPI	GGTGA	2 cut(s)	21, 152
BalI	TGGCCA	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	282
BarI	GAAGNNNNNNTAC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	31
BceAI	ACGGC	2 cut(s)	32, 180
BciT130I	CCWGG	1 cut(s)	167
BcnI	CCSGG	2 cut(s)	33, 175
BcoDI	GTCTC	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	126
BfrI	CTTAAG	1 cut(s)	202
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	3 cut(s)	33, 167, 175
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	3 cut(s)	33, 167, 175
BmsI	GCATC	1 cut(s)	58
BpuMI	CCSGG	2 cut(s)	33, 175
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 32
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	2 cut(s)	31, 32
BseMII	CTCAG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	31
BshFI	GGCC	1 cut(s)	189
BshNI	GGYRCC	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	32, 174
BslI	CCNNNNNNNGG	2 cut(s)	31, 32
BsmAI	GTCTC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	156
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	284
BspQI	GCTCTTC	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	282
BspTI	CTTAAG	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	3 cut(s)	144, 228, 261
BstAFI	CTTAAG	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	102
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	3 cut(s)	31, 165, 173
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	73
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	6 cut(s)	36, 93, 124, 189, 224, 289
CviKI_1	RGCY	6 cut(s)	36, 93, 124, 189, 224, 289
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	3 cut(s)	144, 228, 261
EarI	CTCTTC	3 cut(s)	144, 228, 261
Eco31I	GGTCTC	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	165
FaeI	CATG	1 cut(s)	164
FaiI	YATR	4 cut(s)	162, 183, 293, 295
FatI	CATG	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	2 cut(s)	32, 174
Hin1II	CATG	1 cut(s)	164
HpaII	CCGG	2 cut(s)	32, 174
HphI	GGTGA	2 cut(s)	21, 152
HpyAV	CCTTC	3 cut(s)	23, 36, 268
HpyCH4III	ACNGT	1 cut(s)	64
HpyF3I	CTNAG	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	164
KpnI	GGTACC	1 cut(s)	286
LguI	GCTCTTC	1 cut(s)	144
LpnPI	CCDG	6 cut(s)	45, 79, 152, 179, 187, 234
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	58
MboII	GAAGA	3 cut(s)	161, 245, 278
MhlI	GDGCHC	1 cut(s)	156
MlsI	TGGCCA	1 cut(s)	189
MluNI	TGGCCA	1 cut(s)	189
Mox20I	TGGCCA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	1 cut(s)	203
MslI	CAYNNNNRTG	2 cut(s)	159, 195
Msp20I	TGGCCA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	93
MspCI	CTTAAG	1 cut(s)	202
MspI	CCGG	2 cut(s)	32, 174
MspR9I	CCNGG	3 cut(s)	33, 167, 175
MvaI	CCWGG	1 cut(s)	167
NciI	CCSGG	2 cut(s)	33, 175
NlaIII	CATG	1 cut(s)	164
NlaIV	GGNNCC	1 cut(s)	284
NspI	RCATGY	1 cut(s)	164
OliI	CACNNNNGTG	1 cut(s)	195
PciSI	GCTCTTC	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	93
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
RseI	CAYNNNNRTG	2 cut(s)	159, 195
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	1 cut(s)	45
ScrFI	CCNGG	3 cut(s)	33, 167, 175
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	4 cut(s)	15, 95, 226, 291
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	126
SmiMI	CAYNNNNRTG	2 cut(s)	159, 195
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
StyD4I	CCNGG	3 cut(s)	31, 165, 173
TaaI	ACNGT	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	1 cut(s)	197
TseI	GCWGC	1 cut(s)	44
TspRI	CASTG	1 cut(s)	197
Vha464I	CTTAAG	1 cut(s)	202
XceI	RCATGY	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.