Choline-phosphate cytidylyltransferase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_GTF3C1_N | PF23704 | 1 - 100 | 9.9e-35 | General transcription factor 3C polypeptide 1, winged-helix domain |
| B-block_TFIIIC | PF04182 | 111 - 194 | 1.2e-12 | B-block binding subunit of TFIIIC |
| DUF7599 | PF24538 | 234 - 316 | 7.3e-36 | Domain of unknown function (DUF7599) |
| DUF7646 | PF24657 | 335 - 419 | 3.5e-36 | Domain of unknown function (DUF7646) |
| WHD_GTF3C1 | PF24101 | 551 - 660 | 3.1e-40 | GTF3C1, extended winged-helix domain |
| DUF7647 | PF24658 | 746 - 925 | 1.4e-83 | Domain of unknown function (DUF7647) |
| DUF7645 | PF24655 | 928 - 983 | 8.8e-30 | Domain of unknown function (DUF7645) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2925 |
| AarI | CACCTGC | 1 cut(s) | 2896 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 76, 5047 |
| AatII | GACGTC | 1 cut(s) | 2998 |
| Acc36I | ACCTGC | 1 cut(s) | 2896 |
| Acc65I | GGTACC | 1 cut(s) | 5576 |
| AccB1I | GGYRCC | 3 cut(s) | 1574, 3225, 5576 |
| AccBSI | CCGCTC | 1 cut(s) | 156 |
| AccI | GTMKAC | 4 cut(s) | 306, 2992, 3978, 5379 |
| AccII | CGCG | 4 cut(s) | 180, 357, 593, 5622 |
| AccIII | TCCGGA | 1 cut(s) | 276 |
| AciI | CCGC | 9 cut(s) | 154, 178, 204, 1150, 2002, 2702, 2932, 4084, 4203 |
| AcoI | YGGCCR | 2 cut(s) | 3747, 5107 |
| AcuI | CTGAAG | 8 cut(s) | 3399, 3653, 4338, 4428, 4940, 5028, 5139, 5229 |
| AcvI | CACGTG | 1 cut(s) | 2606 |
| AcyI | GRCGYC | 4 cut(s) | 147, 1575, 2935, 2995 |
| AflII | CTTAAG | 1 cut(s) | 2546 |
| AflIII | ACRYGT | 4 cut(s) | 355, 961, 3305, 5398 |
| AgeI | ACCGGT | 1 cut(s) | 3782 |
| AjiI | CACGTC | 2 cut(s) | 3308, 5399 |
| AjnI | CCWGG | 7 cut(s) | 1097, 2731, 2898, 3825, 4534, 4918, 5081 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1488, 1520 |
| AleI | CACNNNNGTG | 1 cut(s) | 1889 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2493, 2525 |
| Alw21I | GWGCWC | 8 cut(s) | 696, 1169, 1769, 1991, 2071, 2814, 5555, 5628 |
| Alw26I | GTCTC | 6 cut(s) | 1386, 1421, 1748, 2372, 2403, 3653 |
| Alw44I | GTGCAC | 3 cut(s) | 1765, 2067, 5551 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 844, 1775, 2027, 3095, 3422, 5051 |
| Aor13HI | TCCGGA | 1 cut(s) | 276 |
| AoxI | GGCC | 8 cut(s) | 55, 270, 292, 1402, 1870, 3747, 5107, 5558 |
| ApaI | GGGCCC | 1 cut(s) | 5562 |
| ApaLI | GTGCAC | 3 cut(s) | 1765, 2067, 5551 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 345, 377, 4610, 4642 |
| AseI | ATTAAT | 4 cut(s) | 1067, 3839, 4221, 5058 |
| AsiGI | ACCGGT | 1 cut(s) | 3782 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 284, 2040, 3319, 3867, 5448 |
| Asp718I | GGTACC | 1 cut(s) | 5576 |
| AspLEI | GCGC | 6 cut(s) | 182, 487, 593, 595, 1556, 1577 |
| AsuII | TTCGAA | 2 cut(s) | 1273, 2470 |
| AvaII | GGWCC | 5 cut(s) | 78, 1511, 2704, 5307, 5361 |
| AxyI | CCTNAGG | 1 cut(s) | 4830 |
| BaeGI | GKGCMC | 5 cut(s) | 1769, 1827, 2071, 5555, 5562 |
| BalI | TGGCCA | 1 cut(s) | 3749 |
| BamHI | GGATCC | 1 cut(s) | 2315 |
| BanI | GGYRCC | 3 cut(s) | 1574, 3225, 5576 |
| BanII | GRGCYC | 3 cut(s) | 2814, 5226, 5562 |
| BauI | CACGAG | 1 cut(s) | 2382 |
| BbrPI | CACGTG | 1 cut(s) | 2606 |
| BbsI | GAAGAC | 2 cut(s) | 3659, 4608 |
| Bbv12I | GWGCWC | 8 cut(s) | 696, 1169, 1769, 1991, 2071, 2814, 5555, 5628 |
| BbvCI | CCTCAGC | 1 cut(s) | 5289 |
| BceAI | ACGGC | 8 cut(s) | 70, 317, 491, 1196, 1709, 1857, 4097, 5122 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2894, 2928, 3894, 3928 |
| BciT130I | CCWGG | 7 cut(s) | 1099, 2733, 2900, 3827, 4536, 4920, 5083 |
| BciVI | GTATCC | 3 cut(s) | 1647, 1677, 2401 |
| BclI | TGATCA | 3 cut(s) | 2482, 3646, 4660 |
| BcoDI | GTCTC | 6 cut(s) | 1386, 1421, 1748, 2372, 2403, 3653 |
| BfmI | CTRYAG | 9 cut(s) | 796, 1077, 1887, 4005, 4494, 4572, 4584, 5263, 5482 |
| BfoI | RGCGCY | 1 cut(s) | 1578 |
| BfrI | CTTAAG | 1 cut(s) | 2546 |
| BfuAI | ACCTGC | 1 cut(s) | 2896 |
| BfuI | GTATCC | 3 cut(s) | 1647, 1677, 2401 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 269 |
| BglII | AGATCT | 4 cut(s) | 3011, 3540, 3908, 4276 |
| BlpI | GCTNAGC | 2 cut(s) | 1725, 2799 |
| BmcAI | AGTACT | 3 cut(s) | 2245, 4717, 5033 |
| Bme1390I | CCNGG | 7 cut(s) | 1099, 2733, 2900, 3827, 4536, 4920, 5083 |
| Bme18I | GGWCC | 5 cut(s) | 78, 1511, 2704, 5307, 5361 |
| BmgBI | CACGTC | 2 cut(s) | 3308, 5399 |
| BmrFI | CCNGG | 7 cut(s) | 1099, 2733, 2900, 3827, 4536, 4920, 5083 |
| BmrI | ACTGGG | 2 cut(s) | 3198, 5565 |
| BmuI | ACTGGG | 2 cut(s) | 3198, 5565 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3177 |
| BpiI | GAAGAC | 2 cut(s) | 3659, 4608 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1906, 1938 |
| BpmI | CTGGAG | 3 cut(s) | 50, 2921, 5104 |
| Bpu10I | CCTNAGC | 3 cut(s) | 402, 630, 5289 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1725, 2799 |
| Bpu14I | TTCGAA | 2 cut(s) | 1273, 2470 |
| BpuEI | CTTGAG | 3 cut(s) | 1521, 3740, 4788 |
| Bsa29I | ATCGAT | 2 cut(s) | 1222, 4296 |
| BsaAI | YACGTR | 2 cut(s) | 2606, 5550 |
| BsaBI | GATNNNNATC | 5 cut(s) | 608, 3585, 3651, 4275, 5517 |
| BsaHI | GRCGYC | 4 cut(s) | 147, 1575, 2935, 2995 |
| BsaI | GGTCTC | 1 cut(s) | 1386 |
| BsaWI | WCCGGW | 3 cut(s) | 276, 3399, 3782 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3948, 3978 |
| Bse118I | RCCGGY | 2 cut(s) | 712, 3782 |
| Bse1I | ACTGG | 7 cut(s) | 1363, 2288, 2425, 3064, 3193, 3797, 5560 |
| Bse21I | CCTNAGG | 1 cut(s) | 4830 |
| Bse3DI | GCAATG | 2 cut(s) | 723, 4851 |
| Bse8I | GATNNNNATC | 5 cut(s) | 608, 3585, 3651, 4275, 5517 |
| BseAI | TCCGGA | 1 cut(s) | 276 |
| BseBI | CCWGG | 7 cut(s) | 1099, 2733, 2900, 3827, 4536, 4920, 5083 |
| BseCI | ATCGAT | 2 cut(s) | 1222, 4296 |
| BseJI | GATNNNNATC | 5 cut(s) | 608, 3585, 3651, 4275, 5517 |
| BseMI | GCAATG | 2 cut(s) | 723, 4851 |
| BseNI | ACTGG | 7 cut(s) | 1363, 2288, 2425, 3064, 3193, 3797, 5560 |
| BsePI | GCGCGC | 1 cut(s) | 591 |
| BseRI | GAGGAG | 8 cut(s) | 79, 82, 85, 88, 91, 3347, 3737, 5295 |
| BseSI | GKGCMC | 5 cut(s) | 1769, 1827, 2071, 5555, 5562 |
| BseYI | CCCAGC | 1 cut(s) | 3430 |
| BsgI | GTGCAG | 3 cut(s) | 1883, 4029, 4581 |
| Bsh1236I | CGCG | 4 cut(s) | 180, 357, 593, 5622 |
| Bsh1285I | CGRYCG | 1 cut(s) | 27 |
| BshFI | GGCC | 8 cut(s) | 57, 272, 294, 1404, 1872, 3749, 5109, 5560 |
| BshNI | GGYRCC | 3 cut(s) | 1574, 3225, 5576 |
| BshTI | ACCGGT | 1 cut(s) | 3782 |
| BshVI | ATCGAT | 2 cut(s) | 1222, 4296 |
| BsiEI | CGRYCG | 1 cut(s) | 27 |
| BsiHKAI | GWGCWC | 8 cut(s) | 696, 1169, 1769, 1991, 2071, 2814, 5555, 5628 |
| BsiSI | CCGG | 5 cut(s) | 277, 713, 3400, 3783, 5455 |
| BsmAI | GTCTC | 6 cut(s) | 1386, 1421, 1748, 2372, 2403, 3653 |
| BsmBI | CGTCTC | 1 cut(s) | 1748 |
| BsmI | GAATGC | 1 cut(s) | 4074 |
| BsnI | GGCC | 8 cut(s) | 57, 272, 294, 1404, 1872, 3749, 5109, 5560 |
| Bso31I | GGTCTC | 1 cut(s) | 1386 |
| Bsp119I | TTCGAA | 2 cut(s) | 1273, 2470 |
| Bsp120I | GGGCCC | 1 cut(s) | 5558 |
| Bsp13I | TCCGGA | 1 cut(s) | 276 |
| Bsp1407I | TGTACA | 2 cut(s) | 958, 4652 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1725, 2799 |
| Bsp19I | CCATGG | 2 cut(s) | 3680, 5342 |
| Bsp68I | TCGCGA | 1 cut(s) | 5622 |
| BspACI | CCGC | 9 cut(s) | 154, 178, 204, 1150, 2002, 2702, 2932, 4084, 4203 |
| BspANI | GGCC | 8 cut(s) | 57, 272, 294, 1404, 1872, 3749, 5109, 5560 |
| BspDI | ATCGAT | 2 cut(s) | 1222, 4296 |
| BspEI | TCCGGA | 1 cut(s) | 276 |
| BspFNI | CGCG | 4 cut(s) | 180, 357, 593, 5622 |
| BspHI | TCATGA | 3 cut(s) | 1945, 2746, 3619 |
| BspMAI | CTGCAG | 2 cut(s) | 1081, 4498 |
| BspMI | ACCTGC | 1 cut(s) | 2896 |
| BspQI | GCTCTTC | 1 cut(s) | 3066 |
| BspT104I | TTCGAA | 2 cut(s) | 1273, 2470 |
| BspT107I | GGYRCC | 3 cut(s) | 1574, 3225, 5576 |
| BspTI | CTTAAG | 1 cut(s) | 2546 |
| BspTNI | GGTCTC | 1 cut(s) | 1386 |
| BsrBI | CCGCTC | 1 cut(s) | 156 |
| BsrDI | GCAATG | 2 cut(s) | 723, 4851 |
| BsrFI | RCCGGY | 2 cut(s) | 712, 3782 |
| BsrGI | TGTACA | 2 cut(s) | 958, 4652 |
| BsrI | ACTGG | 7 cut(s) | 1363, 2288, 2425, 3064, 3193, 3797, 5560 |
| BssAI | RCCGGY | 2 cut(s) | 712, 3782 |
| BssHII | GCGCGC | 1 cut(s) | 591 |
| BssNI | GRCGYC | 4 cut(s) | 147, 1575, 2935, 2995 |
| BssSI | CACGAG | 1 cut(s) | 2382 |
| BssT1I | CCWWGG | 6 cut(s) | 1631, 3243, 3680, 4751, 5342, 5584 |
| Bst2BI | CACGAG | 1 cut(s) | 2382 |
| Bst2UI | CCWGG | 7 cut(s) | 1099, 2733, 2900, 3827, 4536, 4920, 5083 |
| Bst6I | CTCTTC | 6 cut(s) | 615, 3002, 3066, 4226, 5123, 5205 |
| BstACI | GRCGYC | 4 cut(s) | 147, 1575, 2935, 2995 |
| BstAFI | CTTAAG | 1 cut(s) | 2546 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3851 |
| BstAUI | TGTACA | 2 cut(s) | 958, 4652 |
| BstBAI | YACGTR | 2 cut(s) | 2606, 5550 |
| BstBI | TTCGAA | 2 cut(s) | 1273, 2470 |
| BstDSI | CCRYGG | 4 cut(s) | 1212, 1656, 3680, 5342 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 2903, 3722, 4755 |
| BstFNI | CGCG | 4 cut(s) | 180, 357, 593, 5622 |
| BstH2I | RGCGCY | 1 cut(s) | 1578 |
| BstHHI | GCGC | 6 cut(s) | 182, 487, 593, 595, 1556, 1577 |
| BstMAI | GTCTC | 6 cut(s) | 1386, 1421, 1748, 2372, 2403, 3653 |
| BstMCI | CGRYCG | 1 cut(s) | 27 |
| BstNI | CCWGG | 7 cut(s) | 1099, 2733, 2900, 3827, 4536, 4920, 5083 |
| BstNSI | RCATGY | 3 cut(s) | 578, 965, 5332 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3177 |
| BstSCI | CCNGG | 7 cut(s) | 1097, 2731, 2898, 3825, 4534, 4918, 5081 |
| BstSFI | CTRYAG | 9 cut(s) | 796, 1077, 1887, 4005, 4494, 4572, 4584, 5263, 5482 |
| BstSLI | GKGCMC | 5 cut(s) | 1769, 1827, 2071, 5555, 5562 |
| BstUI | CGCG | 4 cut(s) | 180, 357, 593, 5622 |
| BstV2I | GAAGAC | 2 cut(s) | 3659, 4608 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1891, 2420, 5082 |
| Bsu15I | ATCGAT | 2 cut(s) | 1222, 4296 |
| Bsu36I | CCTNAGG | 1 cut(s) | 4830 |
| BsuI | GTATCC | 3 cut(s) | 1647, 1677, 2401 |
| BsuRI | GGCC | 8 cut(s) | 57, 272, 294, 1404, 1872, 3749, 5109, 5560 |
| BsuTUI | ATCGAT | 2 cut(s) | 1222, 4296 |
| BtgI | CCRYGG | 4 cut(s) | 1212, 1656, 3680, 5342 |
| BtgZI | GCGATG | 1 cut(s) | 5115 |
| BtrI | CACGTC | 2 cut(s) | 3308, 5399 |
| BtsI | GCAGTG | 2 cut(s) | 1825, 5254 |
| BtuMI | TCGCGA | 1 cut(s) | 5622 |
| BveI | ACCTGC | 1 cut(s) | 2896 |
| CaiI | CAGNNNCTG | 6 cut(s) | 844, 1775, 2027, 3095, 3422, 5051 |
| CciI | TCATGA | 3 cut(s) | 1945, 2746, 3619 |
| CfoI | GCGC | 6 cut(s) | 182, 487, 593, 595, 1556, 1577 |
| Cfr10I | RCCGGY | 2 cut(s) | 712, 3782 |
| ClaI | ATCGAT | 2 cut(s) | 1222, 4296 |
| CseI | GACGC | 7 cut(s) | 155, 346, 884, 1837, 2924, 3707, 4613 |
| CspAI | ACCGGT | 1 cut(s) | 3782 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2848, 2883 |
| DinI | GGCGCC | 1 cut(s) | 1576 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 76, 5047 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 76, 5047 |
| EaeI | YGGCCR | 2 cut(s) | 3747, 5107 |
| Eam1104I | CTCTTC | 6 cut(s) | 615, 3002, 3066, 4226, 5123, 5205 |
| EarI | CTCTTC | 6 cut(s) | 615, 3002, 3066, 4226, 5123, 5205 |
| Ecl136II | GAGCTC | 1 cut(s) | 2812 |
| Eco130I | CCWWGG | 6 cut(s) | 1631, 3243, 3680, 4751, 5342, 5584 |
| Eco24I | GRGCYC | 3 cut(s) | 2814, 5226, 5562 |
| Eco31I | GGTCTC | 1 cut(s) | 1386 |
| Eco32I | GATATC | 2 cut(s) | 2586, 4441 |
| Eco47I | GGWCC | 5 cut(s) | 78, 1511, 2704, 5307, 5361 |
| Eco53kI | GAGCTC | 1 cut(s) | 2812 |
| Eco57I | CTGAAG | 8 cut(s) | 3399, 3653, 4338, 4428, 4940, 5028, 5139, 5229 |
| Eco72I | CACGTG | 1 cut(s) | 2606 |
| Eco81I | CCTNAGG | 1 cut(s) | 4830 |
| EcoICRI | GAGCTC | 1 cut(s) | 2812 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 2903, 3722, 4755 |
| EcoO109I | RGGNCCY | 3 cut(s) | 271, 5307, 5559 |
| EcoRII | CCWGG | 7 cut(s) | 1097, 2731, 2898, 3825, 4534, 4918, 5081 |
| EcoRV | GATATC | 2 cut(s) | 2586, 4441 |
| EcoT14I | CCWWGG | 6 cut(s) | 1631, 3243, 3680, 4751, 5342, 5584 |
| EcoT22I | ATGCAT | 4 cut(s) | 1267, 2539, 5330, 5541 |
| EcoT38I | GRGCYC | 3 cut(s) | 2814, 5226, 5562 |
| EgeI | GGCGCC | 1 cut(s) | 1576 |
| EheI | GGCGCC | 1 cut(s) | 1576 |
| ErhI | CCWWGG | 6 cut(s) | 1631, 3243, 3680, 4751, 5342, 5584 |
| Esp3I | CGTCTC | 1 cut(s) | 1748 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 453, 485, 3236, 3268 |
| FauI | CCCGC | 3 cut(s) | 211, 1157, 1995 |
| FauNDI | CATATG | 3 cut(s) | 2533, 3859, 5230 |
| FbaI | TGATCA | 3 cut(s) | 2482, 3646, 4660 |
| FblI | GTMKAC | 4 cut(s) | 306, 2992, 3978, 5379 |
| FriOI | GRGCYC | 3 cut(s) | 2814, 5226, 5562 |
| GlaI | GCGC | 6 cut(s) | 181, 486, 592, 594, 1555, 1576 |
| GsaI | CCCAGC | 1 cut(s) | 3434 |
| GsuI | CTGGAG | 3 cut(s) | 50, 2921, 5104 |
| HaeII | RGCGCY | 1 cut(s) | 1578 |
| HaeIII | GGCC | 8 cut(s) | 57, 272, 294, 1404, 1872, 3749, 5109, 5560 |
| HapII | CCGG | 5 cut(s) | 277, 713, 3400, 3783, 5455 |
| HgaI | GACGC | 7 cut(s) | 155, 346, 884, 1837, 2924, 3707, 4613 |
| HhaI | GCGC | 6 cut(s) | 182, 487, 593, 595, 1556, 1577 |
| Hin1I | GRCGYC | 4 cut(s) | 147, 1575, 2935, 2995 |
| Hin6I | GCGC | 6 cut(s) | 180, 485, 591, 593, 1554, 1575 |
| HinP1I | GCGC | 6 cut(s) | 180, 485, 591, 593, 1554, 1575 |
| HincII | GTYRAC | 4 cut(s) | 307, 1095, 2939, 3311 |
| HindII | GTYRAC | 4 cut(s) | 307, 1095, 2939, 3311 |
| HindIII | AAGCTT | 3 cut(s) | 2849, 3944, 4019 |
| HpaII | CCGG | 5 cut(s) | 277, 713, 3400, 3783, 5455 |
| Hpy99I | CGWCG | 6 cut(s) | 263, 362, 2457, 3000, 4521, 5400 |
| HpyCH4IV | ACGT | 8 cut(s) | 2605, 2989, 2995, 3274, 3307, 4429, 5398, 5549 |
| HpySE526I | ACGT | 8 cut(s) | 2605, 2989, 2995, 3274, 3307, 4429, 5398, 5549 |
| Hsp92I | GRCGYC | 4 cut(s) | 147, 1575, 2935, 2995 |
| HspAI | GCGC | 6 cut(s) | 180, 485, 591, 593, 1554, 1575 |
| KasI | GGCGCC | 1 cut(s) | 1574 |
| Kpn2I | TCCGGA | 1 cut(s) | 276 |
| KpnI | GGTACC | 1 cut(s) | 5580 |
| Ksp22I | TGATCA | 3 cut(s) | 2482, 3646, 4660 |
| LguI | GCTCTTC | 1 cut(s) | 3066 |
| LmnI | GCTCC | 8 cut(s) | 161, 406, 520, 1339, 2902, 3859, 4612, 5155 |
| MaeII | ACGT | 8 cut(s) | 2605, 2989, 2995, 3274, 3307, 4429, 5398, 5549 |
| MbiI | CCGCTC | 1 cut(s) | 156 |
| MfeI | CAATTG | 2 cut(s) | 1788, 3175 |
| MlsI | TGGCCA | 1 cut(s) | 3749 |
| MluI | ACGCGT | 1 cut(s) | 355 |
| MluNI | TGGCCA | 1 cut(s) | 3749 |
| Mly113I | GGCGCC | 1 cut(s) | 1575 |
| MlyI | GAGTC | 9 cut(s) | 78, 227, 302, 1192, 3547, 4754, 4980, 4988, 5382 |
| MmeI | TCCRAC | 6 cut(s) | 129, 956, 3754, 3777, 4126, 5475 |
| Mox20I | TGGCCA | 1 cut(s) | 3749 |
| Mph1103I | ATGCAT | 4 cut(s) | 1267, 2539, 5330, 5541 |
| MroI | TCCGGA | 1 cut(s) | 276 |
| MroXI | GAANNNNTTC | 5 cut(s) | 284, 2040, 3319, 3867, 5448 |
| MscI | TGGCCA | 1 cut(s) | 3749 |
| MslI | CAYNNNNRTG | 8 cut(s) | 966, 1889, 1996, 2064, 2946, 3927, 4949, 5523 |
| Msp20I | TGGCCA | 1 cut(s) | 3749 |
| MspA1I | CMGCKG | 3 cut(s) | 1595, 2795, 3067 |
| MspCI | CTTAAG | 1 cut(s) | 2546 |
| MspI | CCGG | 5 cut(s) | 277, 713, 3400, 3783, 5455 |
| MspR9I | CCNGG | 7 cut(s) | 1099, 2733, 2900, 3827, 4536, 4920, 5083 |
| MunI | CAATTG | 2 cut(s) | 1788, 3175 |
| Mva1269I | GAATGC | 1 cut(s) | 4074 |
| MvaI | CCWGG | 7 cut(s) | 1099, 2733, 2900, 3827, 4536, 4920, 5083 |
| MvnI | CGCG | 4 cut(s) | 180, 357, 593, 5622 |
| NarI | GGCGCC | 1 cut(s) | 1575 |
| NcoI | CCATGG | 2 cut(s) | 3680, 5342 |
| NdeI | CATATG | 3 cut(s) | 2533, 3859, 5230 |
| NmeAIII | GCCGAG | 1 cut(s) | 549 |
| NmuCI | GTSAC | 7 cut(s) | 541, 1022, 1858, 3133, 3564, 4616, 4746 |
| NruI | TCGCGA | 1 cut(s) | 5622 |
| NsiI | ATGCAT | 4 cut(s) | 1267, 2539, 5330, 5541 |
| NspI | RCATGY | 3 cut(s) | 578, 965, 5332 |
| NspV | TTCGAA | 2 cut(s) | 1273, 2470 |
| OliI | CACNNNNGTG | 1 cut(s) | 1889 |
| PaeI | GCATGC | 1 cut(s) | 5332 |
| PagI | TCATGA | 3 cut(s) | 1945, 2746, 3619 |
| PaqCI | CACCTGC | 1 cut(s) | 2896 |
| PauI | GCGCGC | 1 cut(s) | 591 |
| PciI | ACATGT | 1 cut(s) | 961 |
| PciSI | GCTCTTC | 1 cut(s) | 3066 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 204, 357, 2611, 2995 |
| PctI | GAATGC | 1 cut(s) | 4074 |
| PdmI | GAANNNNTTC | 5 cut(s) | 284, 2040, 3319, 3867, 5448 |
| PflFI | GACNNNGTC | 1 cut(s) | 311 |
| PfoI | TCCNGGA | 1 cut(s) | 5081 |
| PinAI | ACCGGT | 1 cut(s) | 3782 |
| Ple19I | CGATCG | 1 cut(s) | 27 |
| PleI | GAGTC | 9 cut(s) | 78, 227, 302, 1191, 3547, 4753, 4979, 4988, 5382 |
| PluTI | GGCGCC | 1 cut(s) | 1578 |
| PmaCI | CACGTG | 1 cut(s) | 2606 |
| PmlI | CACGTG | 1 cut(s) | 2606 |
| PpsI | GAGTC | 9 cut(s) | 78, 227, 302, 1191, 3547, 4753, 4979, 4988, 5382 |
| Ppu21I | YACGTR | 2 cut(s) | 2606, 5550 |
| PpuMI | RGGWCCY | 1 cut(s) | 5307 |
| PscI | ACATGT | 1 cut(s) | 961 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3177 |
| PshBI | ATTAAT | 4 cut(s) | 1067, 3839, 4221, 5058 |
| PsiI | TTATAA | 1 cut(s) | 2925 |
| Psp124BI | GAGCTC | 1 cut(s) | 2814 |
| Psp5II | RGGWCCY | 1 cut(s) | 5307 |
| Psp6I | CCWGG | 7 cut(s) | 1097, 2731, 2898, 3825, 4534, 4918, 5081 |
| PspCI | CACGTG | 1 cut(s) | 2606 |
| PspFI | CCCAGC | 1 cut(s) | 3430 |
| PspGI | CCWGG | 7 cut(s) | 1097, 2731, 2898, 3825, 4534, 4918, 5081 |
| PspOMI | GGGCCC | 1 cut(s) | 5558 |
| PspPPI | RGGWCCY | 1 cut(s) | 5307 |
| PstI | CTGCAG | 2 cut(s) | 1081, 4498 |
| PstNI | CAGNNNCTG | 6 cut(s) | 844, 1775, 2027, 3095, 3422, 5051 |
| PsyI | GACNNNGTC | 1 cut(s) | 311 |
| PteI | GCGCGC | 1 cut(s) | 591 |
| PvuI | CGATCG | 1 cut(s) | 27 |
| PvuII | CAGCTG | 3 cut(s) | 1595, 2795, 3067 |
| RruI | TCGCGA | 1 cut(s) | 5622 |
| RseI | CAYNNNNRTG | 8 cut(s) | 966, 1889, 1996, 2064, 2946, 3927, 4949, 5523 |
| SacI | GAGCTC | 1 cut(s) | 2814 |
| SalI | GTCGAC | 1 cut(s) | 305 |
| SapI | GCTCTTC | 1 cut(s) | 3066 |
| ScaI | AGTACT | 3 cut(s) | 2245, 4717, 5033 |
| SchI | GAGTC | 9 cut(s) | 78, 227, 302, 1192, 3547, 4754, 4980, 4988, 5382 |
| ScrFI | CCNGG | 7 cut(s) | 1099, 2733, 2900, 3827, 4536, 4920, 5083 |
| SfcI | CTRYAG | 9 cut(s) | 796, 1077, 1887, 4005, 4494, 4572, 4584, 5263, 5482 |
| SfoI | GGCGCC | 1 cut(s) | 1576 |
| SfuI | TTCGAA | 2 cut(s) | 1273, 2470 |
| SinI | GGWCC | 5 cut(s) | 78, 1511, 2704, 5307, 5361 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 966, 1889, 1996, 2064, 2946, 3927, 4949, 5523 |
| SmlI | CTYRAG | 4 cut(s) | 1536, 2546, 3719, 4803 |
| SmoI | CTYRAG | 4 cut(s) | 1536, 2546, 3719, 4803 |
| SphI | GCATGC | 1 cut(s) | 5332 |
| SsiI | CCGC | 9 cut(s) | 154, 178, 204, 1150, 2002, 2702, 2932, 4084, 4203 |
| SspDI | GGCGCC | 1 cut(s) | 1574 |
| SspI | AATATT | 1 cut(s) | 832 |
| SstI | GAGCTC | 1 cut(s) | 2814 |
| StyD4I | CCNGG | 7 cut(s) | 1097, 2731, 2898, 3825, 4534, 4918, 5081 |
| StyI | CCWWGG | 6 cut(s) | 1631, 3243, 3680, 4751, 5342, 5584 |
| TaiI | ACGT | 8 cut(s) | 2608, 2992, 2998, 3277, 3310, 4432, 5401, 5552 |
| TaqII | GACCGA | 1 cut(s) | 1809 |
| TatI | WGTACW | 8 cut(s) | 958, 2029, 2243, 3968, 4652, 4715, 5031, 5648 |
| TauI | GCSGC | 1 cut(s) | 2935 |
| TseFI | GTSAC | 7 cut(s) | 541, 1022, 1858, 3133, 3564, 4616, 4746 |
| Tsp45I | GTSAC | 7 cut(s) | 541, 1022, 1858, 3133, 3564, 4616, 4746 |
| TspGWI | ACGGA | 3 cut(s) | 148, 301, 1772 |
| Tth111I | GACNNNGTC | 1 cut(s) | 311 |
| Vha464I | CTTAAG | 1 cut(s) | 2546 |
| VneI | GTGCAC | 3 cut(s) | 1765, 2067, 5551 |
| VpaK11BI | GGWCC | 5 cut(s) | 78, 1511, 2704, 5307, 5361 |
| VspI | ATTAAT | 4 cut(s) | 1067, 3839, 4221, 5058 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 2903, 3722, 4755 |
| XbaI | TCTAGA | 3 cut(s) | 1169, 2263, 3181 |
| XceI | RCATGY | 3 cut(s) | 578, 965, 5332 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2495 |
| XmiI | GTMKAC | 4 cut(s) | 306, 2992, 3978, 5379 |
| XmnI | GAANNNNTTC | 5 cut(s) | 284, 2040, 3319, 3867, 5448 |
| ZraI | GACGTC | 1 cut(s) | 2996 |
| ZrmI | AGTACT | 3 cut(s) | 2245, 4717, 5033 |
| Zsp2I | ATGCAT | 4 cut(s) | 1267, 2539, 5330, 5541 |